Wall clock time and date at job start Mon Mar 30 2020 01:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36637 * 125.07782 * 2 1 4 4 C 1.34564 * 109.86415 * 179.97438 * 3 2 1 5 5 C 1.46041 * 106.99227 * 0.26907 * 4 3 2 6 6 C 1.37769 * 125.06859 * 179.97438 * 2 1 3 7 7 C 1.39082 * 133.34678 * 0.02562 * 6 2 1 8 8 C 1.38104 * 120.27223 * 180.02562 * 7 6 2 9 9 C 1.38264 * 120.87314 * 0.02562 * 8 7 6 10 10 C 1.39404 * 120.19317 * 0.02562 * 9 8 7 11 11 C 1.47454 * 120.34467 * 179.97438 * 10 9 8 12 12 C 1.39415 * 120.35688 * 64.99495 * 11 10 9 13 13 C 1.37919 * 119.96933 * 179.97438 * 12 11 10 14 14 C 1.39028 * 120.70230 * 0.02562 * 13 12 11 15 15 C 1.36366 * 120.73365 * 0.02562 * 14 13 12 16 16 C 1.40792 * 119.99740 * 359.69395 * 15 14 13 17 17 C 1.40755 * 120.34101 * 180.27671 * 16 15 14 18 18 H 1.08004 * 119.99316 * 205.44834 * 17 16 15 19 19 C 1.40032 * 120.00402 * 25.45264 * 17 16 15 20 20 N 1.30795 * 119.99831 * 15.34506 * 19 17 16 21 21 Si 1.86802 * 120.00007 * 195.34709 * 19 17 16 22 22 H 1.48497 * 109.47049 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46854 * 119.99762 * 21 19 17 24 24 H 1.48495 * 109.46763 * 239.99752 * 21 19 17 25 25 H 1.08998 * 109.47183 * 90.02332 * 1 2 3 26 26 H 1.08994 * 109.47451 * 210.02592 * 1 2 3 27 27 H 1.09005 * 109.46785 * 330.02639 * 1 2 3 28 28 H 1.08002 * 125.06686 * 359.97438 * 3 2 1 29 29 H 1.07994 * 126.50267 * 179.97438 * 4 3 2 30 30 H 1.07996 * 119.86525 * 0.05412 * 7 6 2 31 31 H 1.07995 * 119.56115 * 179.97438 * 8 7 6 32 32 H 1.08006 * 119.90164 * 179.97438 * 9 8 7 33 33 H 1.07997 * 120.01832 * 359.95661 * 12 11 10 34 34 H 1.08000 * 119.65407 * 179.97438 * 13 12 11 35 35 H 1.08004 * 119.63475 * 180.02562 * 14 13 12 36 36 H 1.07999 * 120.00056 * 179.97438 * 15 14 13 37 37 H 0.96996 * 120.00244 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2502 1.1182 0.0000 4 6 3.5487 0.7651 0.0006 5 6 3.5940 -0.6946 -0.0056 6 6 2.2566 -1.1276 0.0005 7 6 1.9773 -2.4901 0.0007 8 6 3.0059 -3.4116 0.0017 9 6 4.3262 -3.0011 0.0032 10 6 4.6380 -1.6424 0.0042 11 6 6.0448 -1.2009 0.0063 12 6 6.8709 -1.4747 -1.0829 13 6 8.1854 -1.0576 -1.0726 14 6 8.7016 -0.3639 0.0160 15 6 7.9195 -0.0816 1.0969 16 6 6.5716 -0.4880 1.1159 17 6 5.7563 -0.1954 2.2253 18 1 4.9003 -0.8162 2.4449 19 6 6.0550 0.9007 3.0441 20 7 6.8882 1.8194 2.6288 21 14 5.2634 1.0506 4.7295 22 1 4.3659 -0.1098 4.9598 23 1 6.3203 1.0742 5.7723 24 1 4.4745 2.3068 4.7957 25 1 -0.3633 -0.0004 -1.0276 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8903 0.5135 28 1 1.8834 2.1340 -0.0004 29 1 4.3964 1.4342 0.0003 30 1 0.9518 -2.8288 -0.0005 31 1 2.7759 -4.4668 0.0023 32 1 5.1183 -3.7354 0.0045 33 1 6.4817 -2.0135 -1.9341 34 1 8.8209 -1.2728 -1.9189 35 1 9.7334 -0.0450 0.0056 36 1 8.3328 0.4577 1.9364 37 1 7.0954 2.5784 3.1961 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241822418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:39 Heat of formation + Delta-G solvation = 66.715234 kcal Electronic energy + Delta-G solvation = -20784.917229 eV Core-core repulsion = 17877.500797 eV Total energy + Delta-G solvation = -2907.416432 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.98555 -39.46139 -37.51009 -35.51407 -33.84596 -32.43023 -31.39645 -30.05336 -29.08905 -27.06625 -26.84690 -23.84514 -22.80679 -22.16815 -22.03780 -20.24927 -19.06928 -17.84766 -17.23502 -16.98053 -16.32113 -16.06390 -15.98567 -15.42925 -15.24511 -14.71184 -14.40145 -14.20782 -13.76375 -13.50725 -13.43978 -13.32458 -13.00176 -12.97078 -12.79796 -12.60165 -12.33265 -12.15040 -11.98694 -11.90184 -11.44430 -11.08191 -11.01484 -10.20067 -9.26267 -9.21806 -8.92570 -8.60950 -8.16167 -6.22713 0.29869 0.85719 1.02418 1.20237 1.33975 1.47197 1.50639 1.98954 2.11028 2.20386 2.78955 3.16369 3.79015 3.99665 4.05546 4.16569 4.30890 4.42026 4.49312 4.54097 4.59847 4.67166 4.75191 4.79265 4.90570 4.95419 5.11289 5.19055 5.28554 5.35868 5.43165 5.52131 5.69007 5.76061 5.90052 5.96630 6.05220 6.15065 6.24315 6.25594 6.44674 6.49171 6.64525 6.75982 7.00930 7.11768 8.36122 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.008581 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.353407 B = 3262.332675 C = 4475.758404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.491 5.491 3 C 0.042 3.958 4 C -0.204 4.204 5 C -0.116 4.116 6 C 0.078 3.922 7 C -0.150 4.150 8 C -0.096 4.096 9 C -0.175 4.175 10 C 0.035 3.965 11 C -0.187 4.187 12 C -0.084 4.084 13 C -0.244 4.244 14 C -0.110 4.110 15 C -0.188 4.188 16 C 0.103 3.897 17 C -0.451 4.451 18 H 0.059 0.941 19 C 0.043 3.957 20 N -0.818 5.818 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.262 1.262 24 H -0.264 1.264 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.197 0.803 29 H 0.110 0.890 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.161 -2.688 -2.635 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.176 5.176 3 C -0.083 4.083 4 C -0.229 4.229 5 C -0.121 4.121 6 C -0.028 4.028 7 C -0.170 4.170 8 C -0.114 4.114 9 C -0.194 4.194 10 C 0.034 3.966 11 C -0.189 4.189 12 C -0.102 4.102 13 C -0.263 4.263 14 C -0.128 4.128 15 C -0.207 4.207 16 C 0.100 3.900 17 C -0.480 4.480 18 H 0.077 0.923 19 C -0.172 4.172 20 N -0.445 5.445 21 Si 0.787 3.213 22 H -0.192 1.192 23 H -0.186 1.186 24 H -0.189 1.189 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.214 0.786 29 H 0.128 0.872 30 H 0.162 0.838 31 H 0.170 0.830 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.438 -2.404 -2.566 12.926 hybrid contribution 0.393 0.506 0.748 0.985 sum -12.045 -1.898 -1.818 12.328 Atomic orbital electron populations 1.22161 0.74783 1.05384 1.03954 1.43923 1.07027 1.03216 1.63412 1.22095 0.89521 0.92272 1.04371 1.21561 0.96159 0.93498 1.11731 1.19444 0.92305 0.93764 1.06556 1.18499 0.89712 0.89571 1.05028 1.20191 1.00357 0.88221 1.08249 1.20931 0.91049 1.00003 0.99463 1.21184 0.97361 0.93952 1.06913 1.18410 0.91267 0.92291 0.94635 1.18931 0.92750 1.11023 0.96182 1.20858 0.93809 0.99059 0.96515 1.20578 0.96165 1.09241 1.00356 1.20725 0.98709 0.98828 0.94561 1.21076 0.94268 1.06001 0.99352 1.17832 0.91861 0.88983 0.91309 1.19351 1.09982 1.10177 1.08500 0.92318 1.26546 0.94516 0.93995 1.02167 1.69855 1.29185 1.08075 1.37334 0.85408 0.79060 0.78976 0.77866 1.19198 1.18636 1.18911 0.90168 0.89361 0.88200 0.78593 0.87201 0.83766 0.82967 0.86553 0.87536 0.86661 0.87458 0.87783 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 11.02 127.77 1.41 2.79 16 2 N -0.49 -14.98 3.18 -539.22 -1.71 -16.69 16 3 C 0.04 1.40 11.30 83.10 0.94 2.34 16 4 C -0.20 -8.99 10.43 23.45 0.24 -8.75 16 5 C -0.12 -5.24 5.40 -20.01 -0.11 -5.35 16 6 C 0.08 2.88 6.80 38.99 0.27 3.15 16 7 C -0.15 -4.70 9.94 22.44 0.22 -4.48 16 8 C -0.10 -3.09 9.99 22.24 0.22 -2.86 16 9 C -0.17 -7.01 9.74 22.56 0.22 -6.79 16 10 C 0.03 1.62 4.39 -19.89 -0.09 1.54 16 11 C -0.19 -9.64 5.29 -19.63 -0.10 -9.75 16 12 C -0.08 -4.00 9.74 22.48 0.22 -3.78 16 13 C -0.24 -11.20 10.03 22.38 0.22 -10.98 16 14 C -0.11 -5.34 9.96 22.02 0.22 -5.12 16 15 C -0.19 -10.21 8.63 22.46 0.19 -10.02 16 16 C 0.10 5.71 5.59 -21.10 -0.12 5.59 16 17 C -0.45 -24.95 7.53 23.32 0.18 -24.77 16 18 H 0.06 3.37 7.09 -2.91 -0.02 3.35 16 19 C 0.04 2.21 5.19 85.28 0.44 2.65 16 20 N -0.82 -43.13 10.87 21.84 0.24 -42.89 16 21 Si 0.96 40.04 29.59 68.60 2.03 42.07 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 1.36 8.09 -2.39 -0.02 1.34 16 27 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.20 4.80 8.06 -2.91 -0.02 4.77 16 29 H 0.11 5.49 8.06 -2.91 -0.02 5.47 16 30 H 0.14 3.33 8.05 -2.91 -0.02 3.30 16 31 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 34 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 35 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.10 5.86 6.13 -2.91 -0.02 5.85 16 37 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 Total: -1.00 -67.17 316.24 6.20 -60.97 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 1.07 Total: 31.14 kcal Atomic # 6 Polarization: -79.17 SS G_CDS: 4.58 Total: -74.59 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -1.48 Total: -59.59 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -67.17 6.20 -60.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241822418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.687 kcal (2) G-P(sol) polarization free energy of solvation -67.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds