Wall clock time and date at job start Mon Mar 30 2020 01:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37861 * 125.60657 * 2 1 4 4 C 1.39031 * 133.17286 * 0.23883 * 3 2 1 5 5 C 1.37835 * 119.82454 * 180.02562 * 4 3 2 6 6 C 1.38885 * 120.63683 * 359.97438 * 5 4 3 7 7 C 1.36501 * 120.60361 * 0.02600 * 6 5 4 8 8 C 1.40116 * 119.81286 * 359.97438 * 7 6 5 9 9 C 1.41564 * 133.38250 * 179.97438 * 8 7 6 10 10 C 1.36232 * 107.73677 * 180.02562 * 9 8 7 11 11 C 1.47061 * 125.42421 * 180.02562 * 10 9 8 12 12 C 1.39697 * 120.64480 * 131.21256 * 11 10 9 13 13 C 1.37755 * 119.90943 * 180.02562 * 12 11 10 14 14 C 1.38896 * 121.31575 * 359.97438 * 13 12 11 15 15 C 1.36245 * 121.36666 * 0.02743 * 14 13 12 16 16 C 1.40904 * 119.96176 * 359.66308 * 15 14 13 17 17 C 1.40672 * 120.63212 * 180.32912 * 16 15 14 18 18 H 1.08003 * 120.00010 * 152.14832 * 17 16 15 19 19 C 1.40026 * 119.99970 * 332.14290 * 17 16 15 20 20 N 1.30796 * 120.00314 * 348.59158 * 19 17 16 21 21 Si 1.86810 * 119.99909 * 168.58949 * 19 17 16 22 22 H 1.48499 * 109.47184 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47069 * 120.00318 * 21 19 17 24 24 H 1.48500 * 109.47184 * 239.99989 * 21 19 17 25 25 H 1.08995 * 109.46962 * 264.51474 * 1 2 3 26 26 H 1.09005 * 109.47002 * 24.50768 * 1 2 3 27 27 H 1.08992 * 109.47302 * 144.50861 * 1 2 3 28 28 H 1.08001 * 120.08658 * 0.02562 * 4 3 2 29 29 H 1.07993 * 119.67921 * 180.02562 * 5 4 3 30 30 H 1.08006 * 119.69596 * 179.97438 * 6 5 4 31 31 H 1.07998 * 120.09413 * 179.97438 * 7 6 5 32 32 H 1.08001 * 126.13579 * 0.03922 * 9 8 7 33 33 H 1.07996 * 120.04794 * 359.97438 * 12 11 10 34 34 H 1.08000 * 119.34042 * 179.97438 * 13 12 11 35 35 H 1.08009 * 119.31867 * 179.97438 * 14 13 12 36 36 H 1.08005 * 120.02108 * 179.97438 * 15 14 13 37 37 H 0.97005 * 120.00209 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1209 0.0000 4 6 1.9972 2.4846 0.0042 5 6 3.0367 3.3897 0.0024 6 6 4.3552 2.9532 -0.0032 7 6 4.6456 1.6195 -0.0074 8 6 3.6060 0.6801 -0.0056 9 6 3.5742 -0.7352 -0.0093 10 6 2.2677 -1.1210 -0.0055 11 6 1.7896 -2.5118 -0.0069 12 6 0.8125 -2.9297 0.8998 13 6 0.3760 -4.2362 0.8855 14 6 0.8882 -5.1586 -0.0179 15 6 1.8424 -4.8082 -0.9250 16 6 2.3243 -3.4846 -0.9638 17 6 3.3044 -3.1058 -1.8991 18 1 3.3547 -2.0838 -2.2446 19 6 4.2148 -4.0537 -2.3821 20 7 4.3040 -5.2261 -1.8091 21 14 5.3019 -3.6440 -3.8450 22 1 5.0097 -2.2635 -4.3076 23 1 6.7285 -3.7396 -3.4437 24 1 5.0322 -4.6031 -4.9462 25 1 -0.3633 -0.0982 1.0229 26 1 -0.3633 0.9351 -0.4263 27 1 -0.3633 -0.8367 -0.5966 28 1 0.9752 2.8338 0.0090 29 1 2.8239 4.4484 0.0061 30 1 5.1580 3.6757 -0.0050 31 1 5.6738 1.2892 -0.0121 32 1 4.4320 -1.3914 -0.0140 33 1 0.4004 -2.2298 1.6115 34 1 -0.3794 -4.5495 1.5908 35 1 0.5230 -6.1749 -0.0005 36 1 2.2258 -5.5432 -1.6174 37 1 4.9345 -5.8829 -2.1439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243353682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:13 Heat of formation + Delta-G solvation = 73.281408 kcal Electronic energy + Delta-G solvation = -20493.395171 eV Core-core repulsion = 17586.263469 eV Total energy + Delta-G solvation = -2907.131702 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.74908 -37.48442 -36.27233 -33.85100 -32.49126 -30.58520 -29.91020 -29.47687 -27.40341 -25.69236 -25.38198 -22.45493 -21.24961 -20.71515 -20.31250 -18.95331 -17.35946 -16.45553 -15.86746 -15.50261 -15.00019 -14.76363 -14.28864 -13.75096 -13.46877 -13.42502 -12.99528 -12.69357 -12.47709 -12.47229 -11.95155 -11.76230 -11.73063 -11.33581 -11.18962 -11.04710 -10.87886 -10.65478 -10.49629 -10.36143 -9.71928 -9.60128 -9.38192 -9.12710 -7.88474 -7.54155 -7.31521 -6.95990 -6.66770 -4.49260 1.56303 2.14027 2.51772 2.78561 3.01826 3.09070 3.14744 3.38520 3.72111 3.83860 4.46931 4.51899 5.15941 5.17961 5.40264 5.47711 5.53455 5.58148 5.67717 5.80763 5.94881 6.04364 6.06473 6.26035 6.29666 6.33535 6.58535 6.62954 6.81139 6.90809 6.95986 7.04740 7.11018 7.16549 7.42441 7.43264 7.52725 7.73415 7.80600 7.95221 7.99713 8.07062 8.11999 8.48633 8.68669 8.80218 9.99998 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.007141 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.170280 B = 3919.833469 C = 5460.328003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.484 5.484 3 C 0.075 3.925 4 C -0.124 4.124 5 C -0.125 4.125 6 C -0.153 4.153 7 C -0.083 4.083 8 C -0.089 4.089 9 C -0.206 4.206 10 C 0.191 3.809 11 C -0.191 4.191 12 C -0.064 4.064 13 C -0.251 4.251 14 C -0.091 4.091 15 C -0.163 4.163 16 C 0.142 3.858 17 C -0.432 4.432 18 H 0.087 0.913 19 C 0.074 3.926 20 N -0.784 5.784 21 Si 0.910 3.090 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.271 1.271 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.463 8.233 1.000 8.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.167 5.167 3 C -0.032 4.032 4 C -0.145 4.145 5 C -0.145 4.145 6 C -0.173 4.173 7 C -0.101 4.101 8 C -0.094 4.094 9 C -0.229 4.229 10 C 0.085 3.915 11 C -0.194 4.194 12 C -0.082 4.082 13 C -0.270 4.270 14 C -0.110 4.110 15 C -0.183 4.183 16 C 0.138 3.862 17 C -0.460 4.460 18 H 0.105 0.895 19 C -0.146 4.146 20 N -0.408 5.408 21 Si 0.734 3.266 22 H -0.180 1.180 23 H -0.196 1.196 24 H -0.196 1.196 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.162 0.838 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.141 0.859 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.685 7.980 0.987 8.477 hybrid contribution 0.397 0.036 -0.517 0.653 sum -2.288 8.015 0.469 8.349 Atomic orbital electron populations 1.21793 0.78090 1.03395 1.02380 1.44335 1.05283 1.04408 1.62687 1.18286 0.90414 0.88081 1.06394 1.19882 0.98729 0.89512 1.06355 1.20579 0.92369 0.98044 1.03464 1.20425 0.96080 0.95285 1.05490 1.20324 0.97694 0.92147 0.99947 1.18321 0.91955 0.94150 1.04974 1.20771 0.95961 0.92018 1.14142 1.18951 0.88768 0.85647 0.98156 1.18947 1.07512 0.89811 1.03122 1.20534 0.95808 0.95247 0.96639 1.20099 1.07249 0.94286 1.05396 1.20425 0.97158 0.97148 0.96241 1.21063 0.98449 0.97385 1.01365 1.18523 0.89268 0.90174 0.88251 1.19667 1.10316 0.97108 1.18904 0.89493 1.26008 0.97523 0.94107 0.96929 1.69792 1.30247 1.05399 1.35359 0.86197 0.79480 0.80261 0.80656 1.18016 1.19610 1.19615 0.92015 0.90969 0.89783 0.87357 0.86818 0.87040 0.86679 0.83848 0.89581 0.89521 0.89487 0.85899 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 9.92 59.85 0.59 1.90 16 2 N -0.48 -9.40 3.23 -117.61 -0.38 -9.78 16 3 C 0.07 1.42 6.81 -83.85 -0.57 0.85 16 4 C -0.12 -1.99 9.90 -39.43 -0.39 -2.38 16 5 C -0.13 -1.83 10.02 -39.49 -0.40 -2.23 16 6 C -0.15 -2.31 9.97 -39.97 -0.40 -2.71 16 7 C -0.08 -1.43 10.06 -39.50 -0.40 -1.82 16 8 C -0.09 -1.79 6.16 -106.92 -0.66 -2.45 16 9 C -0.21 -4.55 9.22 -39.04 -0.36 -4.91 16 10 C 0.19 4.23 5.85 -82.29 -0.48 3.75 16 11 C -0.19 -4.49 5.54 -102.42 -0.57 -5.06 16 12 C -0.06 -1.38 8.90 -39.21 -0.35 -1.73 16 13 C -0.25 -5.39 9.98 -39.51 -0.39 -5.78 16 14 C -0.09 -2.04 9.91 -40.06 -0.40 -2.44 16 15 C -0.16 -4.03 8.62 -39.29 -0.34 -4.37 16 16 C 0.14 3.58 5.72 -104.61 -0.60 2.99 16 17 C -0.43 -10.87 7.72 -37.99 -0.29 -11.16 16 18 H 0.09 2.22 6.89 -52.48 -0.36 1.86 16 19 C 0.07 1.75 5.25 -17.32 -0.09 1.66 16 20 N -0.78 -19.12 10.83 55.55 0.60 -18.51 16 21 Si 0.91 18.17 29.58 -169.99 -5.03 13.14 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 H 0.06 0.85 7.96 -51.93 -0.41 0.44 16 26 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 27 H 0.08 1.33 7.74 -51.93 -0.40 0.93 16 28 H 0.11 1.46 7.92 -52.49 -0.42 1.05 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.14 3.25 7.86 -52.49 -0.41 2.84 16 33 H 0.09 1.69 7.55 -52.49 -0.40 1.29 16 34 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 36 H 0.12 3.11 6.20 -52.48 -0.33 2.78 16 37 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -27.03 313.10 -10.56 -37.59 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.38 Total: 8.73 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: -6.09 Total: -35.89 kcal Atomic # 7 Polarization: -28.52 SS G_CDS: 0.22 Total: -28.29 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.03 -10.56 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243353682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.870 kcal (2) G-P(sol) polarization free energy of solvation -27.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds