Wall clock time and date at job start Mon Mar 30 2020 01:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37861 * 125.60657 * 2 1 4 4 C 1.39031 * 133.17286 * 0.23883 * 3 2 1 5 5 C 1.37835 * 119.82454 * 180.02562 * 4 3 2 6 6 C 1.38885 * 120.63683 * 359.97438 * 5 4 3 7 7 C 1.36501 * 120.60361 * 0.02600 * 6 5 4 8 8 C 1.40116 * 119.81286 * 359.97438 * 7 6 5 9 9 C 1.41564 * 133.38250 * 179.97438 * 8 7 6 10 10 C 1.36232 * 107.73677 * 180.02562 * 9 8 7 11 11 C 1.47061 * 125.42421 * 180.02562 * 10 9 8 12 12 C 1.39697 * 120.64480 * 131.21256 * 11 10 9 13 13 C 1.37755 * 119.90943 * 180.02562 * 12 11 10 14 14 C 1.38896 * 121.31575 * 359.97438 * 13 12 11 15 15 C 1.36245 * 121.36666 * 0.02743 * 14 13 12 16 16 C 1.40904 * 119.96176 * 359.66308 * 15 14 13 17 17 C 1.40672 * 120.63212 * 180.32912 * 16 15 14 18 18 H 1.08003 * 120.00010 * 152.14832 * 17 16 15 19 19 C 1.40026 * 119.99970 * 332.14290 * 17 16 15 20 20 N 1.30796 * 120.00314 * 348.59158 * 19 17 16 21 21 Si 1.86810 * 119.99909 * 168.58949 * 19 17 16 22 22 H 1.48499 * 109.47184 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47069 * 120.00318 * 21 19 17 24 24 H 1.48500 * 109.47184 * 239.99989 * 21 19 17 25 25 H 1.08995 * 109.46962 * 264.51474 * 1 2 3 26 26 H 1.09005 * 109.47002 * 24.50768 * 1 2 3 27 27 H 1.08992 * 109.47302 * 144.50861 * 1 2 3 28 28 H 1.08001 * 120.08658 * 0.02562 * 4 3 2 29 29 H 1.07993 * 119.67921 * 180.02562 * 5 4 3 30 30 H 1.08006 * 119.69596 * 179.97438 * 6 5 4 31 31 H 1.07998 * 120.09413 * 179.97438 * 7 6 5 32 32 H 1.08001 * 126.13579 * 0.03922 * 9 8 7 33 33 H 1.07996 * 120.04794 * 359.97438 * 12 11 10 34 34 H 1.08000 * 119.34042 * 179.97438 * 13 12 11 35 35 H 1.08009 * 119.31867 * 179.97438 * 14 13 12 36 36 H 1.08005 * 120.02108 * 179.97438 * 15 14 13 37 37 H 0.97005 * 120.00209 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1209 0.0000 4 6 1.9972 2.4846 0.0042 5 6 3.0367 3.3897 0.0024 6 6 4.3552 2.9532 -0.0032 7 6 4.6456 1.6195 -0.0074 8 6 3.6060 0.6801 -0.0056 9 6 3.5742 -0.7352 -0.0093 10 6 2.2677 -1.1210 -0.0055 11 6 1.7896 -2.5118 -0.0069 12 6 0.8125 -2.9297 0.8998 13 6 0.3760 -4.2362 0.8855 14 6 0.8882 -5.1586 -0.0179 15 6 1.8424 -4.8082 -0.9250 16 6 2.3243 -3.4846 -0.9638 17 6 3.3044 -3.1058 -1.8991 18 1 3.3547 -2.0838 -2.2446 19 6 4.2148 -4.0537 -2.3821 20 7 4.3040 -5.2261 -1.8091 21 14 5.3019 -3.6440 -3.8450 22 1 5.0097 -2.2635 -4.3076 23 1 6.7285 -3.7396 -3.4437 24 1 5.0322 -4.6031 -4.9462 25 1 -0.3633 -0.0982 1.0229 26 1 -0.3633 0.9351 -0.4263 27 1 -0.3633 -0.8367 -0.5966 28 1 0.9752 2.8338 0.0090 29 1 2.8239 4.4484 0.0061 30 1 5.1580 3.6757 -0.0050 31 1 5.6738 1.2892 -0.0121 32 1 4.4320 -1.3914 -0.0140 33 1 0.4004 -2.2298 1.6115 34 1 -0.3794 -4.5495 1.5908 35 1 0.5230 -6.1749 -0.0005 36 1 2.2258 -5.5432 -1.6174 37 1 4.9345 -5.8829 -2.1439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243353682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:13 Heat of formation + Delta-G solvation = 62.558977 kcal Electronic energy + Delta-G solvation = -20493.860130 eV Core-core repulsion = 17586.263469 eV Total energy + Delta-G solvation = -2907.596661 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.18338 -39.17523 -37.65797 -35.64423 -33.90368 -32.21382 -31.53308 -30.94866 -28.90607 -27.19444 -27.00844 -23.99276 -22.89411 -22.19683 -21.81420 -20.52597 -19.17725 -17.85246 -17.40258 -17.08843 -16.43033 -16.19567 -15.91366 -15.16225 -15.11241 -14.76901 -14.54232 -14.40067 -13.88961 -13.75898 -13.52318 -13.47671 -13.12505 -12.91927 -12.83839 -12.62982 -12.43734 -12.14062 -12.05556 -11.66082 -11.42123 -11.37911 -11.15461 -10.52451 -9.55123 -9.33190 -8.81234 -8.66333 -8.24641 -6.36060 0.15561 0.77499 0.89282 1.05478 1.34692 1.48250 1.48744 1.93633 2.15998 2.17432 2.71435 3.12537 3.65321 3.90241 3.98122 4.11940 4.28114 4.31819 4.39102 4.44242 4.55607 4.61434 4.65886 4.74006 4.81259 4.94050 5.06941 5.09975 5.23653 5.28055 5.31193 5.34697 5.61437 5.69781 5.81630 5.89181 5.98645 6.05079 6.16495 6.19238 6.29352 6.43434 6.57431 6.67379 6.85082 6.97520 8.24610 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.007141 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.170280 B = 3919.833469 C = 5460.328003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.485 5.485 3 C 0.062 3.938 4 C -0.129 4.129 5 C -0.111 4.111 6 C -0.146 4.146 7 C -0.100 4.100 8 C -0.124 4.124 9 C -0.225 4.225 10 C 0.164 3.836 11 C -0.195 4.195 12 C -0.068 4.068 13 C -0.246 4.246 14 C -0.095 4.095 15 C -0.188 4.188 16 C 0.110 3.890 17 C -0.458 4.458 18 H 0.069 0.931 19 C 0.038 3.962 20 N -0.814 5.814 21 Si 0.974 3.026 22 H -0.265 1.265 23 H -0.263 1.263 24 H -0.258 1.258 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.139 0.861 29 H 0.157 0.843 30 H 0.147 0.853 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 11.028 1.455 11.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.168 5.168 3 C -0.044 4.044 4 C -0.150 4.150 5 C -0.130 4.130 6 C -0.165 4.165 7 C -0.119 4.119 8 C -0.129 4.129 9 C -0.249 4.249 10 C 0.057 3.943 11 C -0.198 4.198 12 C -0.086 4.086 13 C -0.265 4.265 14 C -0.114 4.114 15 C -0.207 4.207 16 C 0.107 3.893 17 C -0.487 4.487 18 H 0.088 0.912 19 C -0.178 4.178 20 N -0.440 5.440 21 Si 0.795 3.205 22 H -0.189 1.189 23 H -0.188 1.188 24 H -0.183 1.183 25 H 0.097 0.903 26 H 0.121 0.879 27 H 0.090 0.910 28 H 0.157 0.843 29 H 0.174 0.826 30 H 0.165 0.835 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.642 10.775 1.452 11.466 hybrid contribution 0.644 -0.646 -0.536 1.058 sum -2.997 10.129 0.916 10.603 Atomic orbital electron populations 1.22041 0.75861 1.04601 1.03555 1.44404 1.06554 1.03595 1.62235 1.18706 0.89822 0.89262 1.06611 1.20311 1.00931 0.88004 1.05739 1.21153 0.91585 0.99970 1.00277 1.20883 0.97726 0.94685 1.03178 1.20588 0.97584 0.93067 1.00625 1.18547 0.93900 0.93415 1.07045 1.20696 0.95561 0.93398 1.15255 1.18806 0.89360 0.86040 1.00100 1.19223 1.07323 0.90529 1.02705 1.20815 0.95330 0.96003 0.96497 1.20490 1.07083 0.93844 1.05049 1.20718 0.96351 0.98666 0.95636 1.21033 1.00003 0.97142 1.02560 1.18873 0.90076 0.91181 0.89205 1.19629 1.11786 0.96707 1.20540 0.91246 1.26689 0.98304 0.93810 0.98977 1.69825 1.31314 1.06219 1.36598 0.85259 0.77936 0.79562 0.77717 1.18914 1.18796 1.18260 0.90284 0.87902 0.90967 0.84320 0.82580 0.83550 0.86042 0.86466 0.87256 0.86272 0.87062 0.87409 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 9.92 127.77 1.27 3.58 16 2 N -0.49 -18.74 3.23 -526.00 -1.70 -20.44 16 3 C 0.06 2.31 6.81 39.04 0.27 2.58 16 4 C -0.13 -3.68 9.90 22.36 0.22 -3.46 16 5 C -0.11 -2.71 10.02 22.33 0.22 -2.49 16 6 C -0.15 -3.88 9.97 22.02 0.22 -3.66 16 7 C -0.10 -3.38 10.06 22.32 0.22 -3.16 16 8 C -0.12 -5.09 6.16 -21.35 -0.13 -5.22 16 9 C -0.23 -10.61 9.22 22.62 0.21 -10.40 16 10 C 0.16 7.58 5.85 40.04 0.23 7.82 16 11 C -0.20 -9.53 5.54 -18.44 -0.10 -9.63 16 12 C -0.07 -2.94 8.90 22.51 0.20 -2.74 16 13 C -0.25 -10.28 9.98 22.31 0.22 -10.06 16 14 C -0.10 -4.29 9.91 21.96 0.22 -4.07 16 15 C -0.19 -9.69 8.62 22.46 0.19 -9.49 16 16 C 0.11 5.89 5.72 -19.86 -0.11 5.78 16 17 C -0.46 -24.67 7.72 23.30 0.18 -24.49 16 18 H 0.07 3.85 6.89 -2.91 -0.02 3.83 16 19 C 0.04 1.92 5.25 85.28 0.45 2.37 16 20 N -0.81 -41.72 10.83 21.84 0.24 -41.48 16 21 Si 0.97 38.88 29.58 68.60 2.03 40.91 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 25 H 0.08 1.99 7.96 -2.39 -0.02 1.98 16 26 H 0.10 2.29 7.88 -2.38 -0.02 2.28 16 27 H 0.07 2.25 7.74 -2.39 -0.02 2.23 16 28 H 0.14 3.06 7.92 -2.91 -0.02 3.04 16 29 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 32 H 0.12 5.90 7.86 -2.91 -0.02 5.88 16 33 H 0.11 4.14 7.55 -2.91 -0.02 4.12 16 34 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 35 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 36 H 0.11 5.77 6.20 -2.91 -0.02 5.76 16 37 H 0.29 13.40 8.30 -92.70 -0.77 12.64 16 Total: -1.00 -62.44 313.10 5.62 -56.82 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 1.07 Total: 30.93 kcal Atomic # 6 Polarization: -70.72 SS G_CDS: 3.98 Total: -66.74 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -1.46 Total: -61.92 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -62.44 5.62 -56.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243353682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.379 kcal (2) G-P(sol) polarization free energy of solvation -62.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds