Wall clock time and date at job start Mon Mar 30 2020 02:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99792 * 2 1 4 4 H 1.08993 * 109.63023 * 329.59976 * 3 2 1 5 5 C 1.53011 * 109.63466 * 89.99946 * 3 2 1 6 6 C 1.50086 * 110.13692 * 169.38284 * 5 3 2 7 7 C 1.31115 * 123.85274 * 342.83859 * 6 5 3 8 8 C 1.47795 * 118.07504 * 180.43075 * 7 6 5 9 9 C 1.39213 * 120.43752 * 75.00424 * 8 7 6 10 10 C 1.40915 * 118.10590 * 179.97438 * 9 8 7 11 11 C 1.41388 * 120.56209 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99970 * 155.72440 * 11 10 9 13 13 C 1.39900 * 119.99901 * 335.71803 * 11 10 9 14 14 N 1.30864 * 119.99648 * 343.49340 * 13 11 10 15 15 Si 1.86791 * 119.99973 * 163.49341 * 13 11 10 16 16 H 1.48498 * 109.47156 * 90.00013 * 15 13 11 17 17 H 1.48496 * 109.47402 * 209.99948 * 15 13 11 18 18 H 1.48502 * 109.47339 * 329.99815 * 15 13 11 19 19 C 1.40815 * 118.87547 * 359.97438 * 10 9 8 20 20 N 1.31506 * 120.74385 * 0.02562 * 19 10 9 21 21 C 1.32131 * 122.10056 * 359.72293 * 20 19 10 22 22 F 1.35109 * 119.47387 * 180.26855 * 21 20 19 23 23 C 1.50097 * 123.84821 * 0.43370 * 7 6 5 24 24 C 1.53011 * 110.13541 * 342.83617 * 23 7 6 25 25 H 1.09001 * 109.47447 * 60.00311 * 1 2 3 26 26 H 1.09003 * 109.47525 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47556 * 300.00129 * 1 2 3 28 28 H 1.08999 * 109.35754 * 289.58814 * 5 3 2 29 29 H 1.09002 * 109.35884 * 49.17622 * 5 3 2 30 30 H 1.08000 * 118.07601 * 162.84188 * 6 5 3 31 31 H 1.07997 * 120.95023 * 359.97438 * 9 8 7 32 32 H 0.97006 * 119.99614 * 180.02562 * 14 13 11 33 33 H 1.08007 * 119.62660 * 180.02562 * 19 10 9 34 34 H 1.08997 * 109.35484 * 222.63232 * 23 7 6 35 35 H 1.08996 * 109.36025 * 103.03874 * 23 7 6 36 36 H 1.08998 * 109.63562 * 289.98269 * 24 23 7 37 37 H 1.08997 * 109.79639 * 169.48456 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3502 2.0001 -0.5195 5 6 2.2193 1.7752 1.4411 6 6 3.0576 3.0200 1.4624 7 6 3.7930 3.4225 0.4544 8 6 4.5772 4.6646 0.6178 9 6 5.7354 4.6709 1.3901 10 6 6.4453 5.8821 1.5121 11 6 7.6286 5.9472 2.2833 12 1 8.3655 6.7096 2.0782 13 6 7.8447 5.0242 3.3122 14 7 6.8462 4.3183 3.7783 15 14 9.5584 4.7995 4.0205 16 1 9.7512 5.7360 5.1567 17 1 9.7173 3.4024 4.4981 18 1 10.5693 5.0813 2.9698 19 6 5.9569 7.0261 0.8522 20 7 4.8570 6.9694 0.1336 21 6 4.1675 5.8511 -0.0079 22 9 3.0473 5.8518 -0.7633 23 6 3.8853 2.6961 -0.8559 24 6 3.3739 1.2624 -0.7004 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.2515 1.9835 1.8973 29 1 2.7221 0.9912 2.0074 30 1 3.0550 3.6193 2.3609 31 1 6.0802 3.7732 1.8816 32 1 6.9960 3.6786 4.4919 33 1 6.4916 7.9606 0.9372 34 1 4.9241 2.6756 -1.1852 35 1 3.2825 3.2159 -1.6005 36 1 4.0767 0.6861 -0.0985 37 1 3.2673 0.8000 -1.6816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243813462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:20 Heat of formation + Delta-G solvation = -81.194809 kcal Electronic energy + Delta-G solvation = -21223.098982 eV Core-core repulsion = 17878.499464 eV Total energy + Delta-G solvation = -3344.599518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.40332 -40.60861 -39.78801 -37.55838 -36.00303 -33.53465 -32.17023 -31.78851 -29.66292 -27.38785 -27.29574 -24.32691 -24.22091 -23.42768 -22.29930 -19.61348 -18.73597 -18.46318 -17.80615 -17.67734 -16.97941 -16.54334 -16.36417 -16.07428 -15.61162 -15.10282 -14.80765 -14.32084 -14.26280 -14.12776 -14.05848 -13.79115 -13.62204 -13.31727 -13.23457 -13.12816 -12.89960 -12.72631 -12.32073 -12.10966 -11.90042 -11.65282 -11.56274 -11.23369 -10.46740 -10.40210 -10.15885 -9.75988 -9.42196 -8.77891 -6.51337 0.43861 0.80485 1.20264 1.41259 1.48370 1.56846 2.16560 2.56377 2.77319 3.27377 3.44524 3.67805 3.75558 3.93077 4.18472 4.24241 4.29249 4.35953 4.49441 4.53531 4.58982 4.64394 4.70602 4.82475 4.86164 4.89637 4.93248 4.96693 5.02070 5.12720 5.20554 5.24644 5.52907 5.62869 5.75800 5.89253 6.02787 6.26817 6.37045 6.61760 6.64412 7.32847 8.15502 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018731 B = 0.005228 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.512760 B = 5354.065298 C = 6437.966533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.399 6.399 3 C 0.093 3.907 4 H 0.068 0.932 5 C -0.096 4.096 6 C -0.141 4.141 7 C -0.080 4.080 8 C -0.094 4.094 9 C -0.120 4.120 10 C 0.036 3.964 11 C -0.462 4.462 12 H 0.096 0.904 13 C 0.037 3.963 14 N -0.809 5.809 15 Si 0.989 3.011 16 H -0.260 1.260 17 H -0.267 1.267 18 H -0.254 1.254 19 C -0.008 4.008 20 N -0.505 5.505 21 C 0.133 3.867 22 F -0.145 7.145 23 C -0.069 4.069 24 C -0.104 4.104 25 H 0.049 0.951 26 H 0.101 0.899 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.296 0.704 33 H 0.154 0.846 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 -9.207 -2.417 10.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.035 3.965 4 H 0.086 0.914 5 C -0.133 4.133 6 C -0.160 4.160 7 C -0.081 4.081 8 C -0.097 4.097 9 C -0.145 4.145 10 C 0.031 3.969 11 C -0.490 4.490 12 H 0.114 0.886 13 C -0.181 4.181 14 N -0.433 5.433 15 Si 0.809 3.191 16 H -0.185 1.185 17 H -0.191 1.191 18 H -0.178 1.178 19 C -0.170 4.170 20 N -0.217 5.217 21 C -0.020 4.020 22 F -0.125 7.125 23 C -0.106 4.106 24 C -0.142 4.142 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.147 0.853 32 H 0.107 0.893 33 H 0.171 0.829 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.711 -8.815 -2.684 10.840 hybrid contribution 0.466 -0.035 0.846 0.966 sum -5.245 -8.849 -1.838 10.450 Atomic orbital electron populations 1.22993 0.79777 1.03883 1.00712 1.87871 1.21243 1.27641 1.95126 1.22121 0.95066 0.84396 0.94887 0.91387 1.20844 0.99581 0.94655 0.98263 1.22242 0.98118 0.98184 0.97418 1.19660 0.97363 0.93851 0.97233 1.19604 0.97629 0.93048 0.99460 1.21745 0.94886 0.98692 0.99209 1.18822 0.94083 0.91587 0.92372 1.19917 1.02932 1.13645 1.12543 0.88551 1.26892 1.02859 0.92805 0.95554 1.69821 1.34242 1.18220 1.21017 0.85070 0.76295 0.78769 0.78954 1.18478 1.19116 1.17768 1.22538 0.93674 0.98402 1.02338 1.66201 1.08757 1.28507 1.18254 1.17855 0.89212 0.91475 1.03450 1.91371 1.49250 1.97011 1.74832 1.20301 1.02064 0.94615 0.93639 1.21576 0.95335 0.95355 1.01916 0.93256 0.88064 0.93546 0.89781 0.89768 0.89404 0.85271 0.89301 0.82906 0.90831 0.90406 0.91314 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.83 113.37 1.23 1.61 16 2 O -0.40 -9.73 10.37 -148.98 -1.54 -11.27 16 3 C 0.09 2.40 2.65 30.72 0.08 2.48 16 4 H 0.07 1.71 7.78 -2.39 -0.02 1.69 16 5 C -0.10 -2.69 5.74 29.66 0.17 -2.52 16 6 C -0.14 -5.09 9.47 25.34 0.24 -4.85 16 7 C -0.08 -3.13 4.87 -17.68 -0.09 -3.22 16 8 C -0.09 -4.43 5.05 -20.03 -0.10 -4.53 16 9 C -0.12 -6.04 8.54 23.16 0.20 -5.84 16 10 C 0.04 1.85 5.59 -21.22 -0.12 1.73 16 11 C -0.46 -22.48 9.08 23.45 0.21 -22.26 16 12 H 0.10 4.37 7.90 -2.91 -0.02 4.34 16 13 C 0.04 1.66 5.19 85.24 0.44 2.11 16 14 N -0.81 -38.43 10.90 21.82 0.24 -38.20 16 15 Si 0.99 34.09 29.59 68.60 2.03 36.12 16 16 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 17 H -0.27 -8.84 7.11 99.48 0.71 -8.13 16 18 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 19 C -0.01 -0.40 10.96 85.37 0.94 0.54 16 20 N -0.51 -26.08 10.33 -193.57 -2.00 -28.08 16 21 C 0.13 6.66 8.41 85.14 0.72 7.38 16 22 F -0.14 -6.84 16.84 44.97 0.76 -6.09 16 23 C -0.07 -2.22 5.80 29.66 0.17 -2.05 16 24 C -0.10 -2.77 5.66 30.72 0.17 -2.59 16 25 H 0.05 0.77 8.09 -2.39 -0.02 0.75 16 26 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.09 3.51 7.94 -2.91 -0.02 3.49 16 31 H 0.13 6.64 6.20 -2.91 -0.02 6.62 16 32 H 0.30 12.63 8.30 -92.70 -0.77 11.86 16 33 H 0.15 6.85 8.06 -2.91 -0.02 6.82 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -57.61 316.55 4.82 -52.80 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 1.07 Total: 26.72 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 4.26 Total: -32.01 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -1.76 Total: -66.27 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.54 Total: -11.27 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.76 Total: -6.09 kcal Atomic # 14 Polarization: 34.09 SS G_CDS: 2.03 Total: 36.12 kcal Total: -57.61 4.82 -52.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243813462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.397 kcal (2) G-P(sol) polarization free energy of solvation -57.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds