Wall clock time and date at job start Mon Mar 30 2020 01:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81399 * 109.47341 * 2 1 4 4 C 1.76196 * 102.99753 * 179.97438 * 3 2 1 5 5 C 1.38991 * 120.08264 * 0.02562 * 4 3 2 6 6 C 1.38065 * 119.91907 * 179.97438 * 5 4 3 7 7 C 1.38324 * 120.08029 * 0.02562 * 6 5 4 8 8 C 1.38271 * 120.16157 * 359.97438 * 7 6 5 9 9 C 1.38108 * 120.08155 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.04039 * 180.02562 * 9 8 7 11 11 N 1.46894 * 109.46870 * 259.97540 * 10 9 8 12 12 C 1.47483 * 111.00331 * 265.96959 * 11 10 9 13 13 C 1.53512 * 87.93312 * 221.30011 * 12 11 10 14 14 C 1.50701 * 114.34223 * 139.68385 * 13 12 11 15 15 H 1.07998 * 120.00277 * 266.08029 * 14 13 12 16 16 C 1.37882 * 120.00152 * 86.06857 * 14 13 12 17 17 N 1.31512 * 119.99778 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00212 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46450 * 90.00561 * 18 16 14 20 20 H 1.48497 * 109.47161 * 210.00561 * 18 16 14 21 21 H 1.48496 * 109.47345 * 330.00977 * 18 16 14 22 22 C 1.47484 * 110.99788 * 170.00208 * 11 10 9 23 23 H 1.09001 * 109.47265 * 300.00605 * 1 2 3 24 24 H 1.09007 * 109.46377 * 59.99899 * 1 2 3 25 25 H 1.08994 * 109.47480 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46779 * 239.99443 * 2 1 3 27 27 H 1.09007 * 109.46377 * 120.00101 * 2 1 3 28 28 H 1.08001 * 120.04160 * 359.95370 * 5 4 3 29 29 H 1.08005 * 119.95297 * 179.72377 * 6 5 4 30 30 H 1.07996 * 119.91729 * 179.97438 * 7 6 5 31 31 H 1.08005 * 119.96251 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47201 * 19.97718 * 10 9 8 33 33 H 1.09006 * 109.46670 * 139.97741 * 10 9 8 34 34 H 1.09002 * 113.47031 * 336.06861 * 12 11 10 35 35 H 1.09003 * 113.47561 * 106.53087 * 12 11 10 36 36 H 1.08997 * 114.17234 * 272.37521 * 13 12 11 37 37 H 0.97001 * 120.00504 * 179.97438 * 17 16 14 38 38 H 1.09003 * 113.47464 * 253.47342 * 22 11 10 39 39 H 1.08999 * 113.47618 * 23.87753 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.8855 1.5115 0.0008 5 6 4.4421 0.2379 0.0007 6 6 5.8144 0.0861 0.0007 7 6 6.6351 1.1996 0.0014 8 6 6.0849 2.4681 0.0016 9 6 4.7131 2.6277 0.0015 10 6 4.1145 4.0108 0.0010 11 7 3.6987 4.3648 1.3647 12 6 2.2768 4.0408 1.5848 13 6 2.1473 5.3726 2.3372 14 6 0.8709 6.1230 2.0564 15 1 0.8475 6.8796 1.2862 16 6 -0.2673 5.8435 2.7828 17 7 -0.2388 4.9223 3.7210 18 14 -1.8492 6.7741 2.4354 19 1 -2.6317 6.0510 1.4009 20 1 -2.6495 6.8730 3.6823 21 1 -1.5240 8.1380 1.9464 22 6 3.3296 5.7900 1.4515 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.8019 -0.6319 0.0009 29 1 6.2475 -0.9033 0.0051 30 1 7.7081 1.0778 0.0019 31 1 6.7287 3.3353 0.0017 32 1 4.8565 4.7277 -0.3503 33 1 3.2479 4.0313 -0.6599 34 1 1.6929 4.0029 0.6651 35 1 2.1235 3.1673 2.2185 36 1 2.3852 5.3103 3.3990 37 1 -1.0393 4.7258 4.2324 38 1 4.0685 6.3990 1.9723 39 1 3.0274 6.2192 0.4962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249437334.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:32 Heat of formation + Delta-G solvation = 54.773130 kcal Electronic energy + Delta-G solvation = -19256.837549 eV Core-core repulsion = 16484.347220 eV Total energy + Delta-G solvation = -2772.490329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.43213 -38.27581 -33.19578 -32.71201 -31.86332 -30.86572 -28.40520 -25.55450 -24.80211 -23.73934 -22.68233 -22.48196 -20.59075 -18.58662 -17.25387 -16.55642 -15.99512 -15.23956 -14.99197 -14.81884 -14.65105 -14.31303 -13.96409 -13.87415 -13.37057 -12.84804 -12.64511 -12.23395 -11.97441 -11.89960 -11.76005 -11.41844 -11.29736 -11.09593 -10.88712 -10.82710 -10.55652 -10.18058 -9.85058 -9.63147 -9.43264 -9.25723 -8.83229 -8.58012 -8.35948 -7.87938 -6.96583 -5.99443 -4.03199 1.40251 1.51588 1.80440 2.70339 3.31550 3.38490 3.41595 3.83926 4.44671 4.90321 4.93923 4.96549 4.99797 5.09057 5.25317 5.32117 5.40492 5.47606 5.56421 5.66882 5.72554 5.84455 5.86993 5.99852 6.16347 6.16700 6.21973 6.34898 6.46087 6.56319 6.60580 6.71204 6.75656 6.85394 7.06473 7.29730 7.35450 7.78967 7.97499 8.15553 8.44311 8.99018 9.60734 11.09983 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.005780 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.609946 B = 4843.186465 C = 5981.356689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.136 4.136 3 S -0.067 6.067 4 C -0.079 4.079 5 C -0.138 4.138 6 C -0.110 4.110 7 C -0.132 4.132 8 C -0.092 4.092 9 C -0.044 4.044 10 C 0.051 3.949 11 N -0.478 5.478 12 C 0.016 3.984 13 C 0.040 3.960 14 C -0.514 4.514 15 H 0.056 0.944 16 C 0.068 3.932 17 N -0.884 5.884 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.007 4.007 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.260 0.740 38 H 0.061 0.939 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.984 -10.190 -8.718 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.284 4.284 3 S 0.179 5.821 4 C -0.193 4.193 5 C -0.162 4.162 6 C -0.130 4.130 7 C -0.152 4.152 8 C -0.112 4.112 9 C -0.050 4.050 10 C -0.077 4.077 11 N -0.200 5.200 12 C -0.113 4.113 13 C 0.020 3.980 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.134 4.134 17 N -0.522 5.522 18 Si 0.715 3.285 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.135 4.135 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.578 -9.625 -8.184 14.733 hybrid contribution -0.582 -0.584 -0.830 1.170 sum 6.996 -10.210 -9.013 15.311 Atomic orbital electron populations 1.21473 0.91986 1.02318 1.03687 1.23738 1.00756 0.99231 1.04651 1.86772 0.96506 1.07705 1.91095 1.21807 0.97754 0.95811 1.03893 1.21063 0.95756 0.95325 1.04096 1.20928 0.93081 0.98508 1.00489 1.21054 0.99447 0.92559 1.02188 1.20944 0.93830 0.97294 0.99127 1.19481 0.92839 0.93899 0.98786 1.21674 0.99642 0.92356 0.94043 1.68961 1.21825 1.08962 1.20255 1.24165 0.85271 1.01860 1.00018 1.20141 0.91476 0.91175 0.95170 1.21017 0.94332 1.20791 1.19099 0.92543 1.24985 0.98794 0.94965 0.94680 1.69974 1.28707 1.31453 1.22021 0.86671 0.83671 0.80427 0.77696 1.20685 1.21201 1.19863 1.24040 0.99297 0.89878 1.00314 0.91020 0.91813 0.91402 0.90368 0.89781 0.86337 0.86338 0.86263 0.85867 0.90954 0.92805 0.92133 0.91102 0.91917 0.92975 0.92062 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.92 37.16 0.37 -1.27 16 2 C -0.14 -1.75 5.05 37.16 0.19 -1.56 16 3 S -0.07 -1.12 16.05 -107.50 -1.73 -2.85 16 4 C -0.08 -1.30 6.11 -39.04 -0.24 -1.54 16 5 C -0.14 -1.95 9.36 -39.37 -0.37 -2.32 16 6 C -0.11 -1.38 10.04 -39.61 -0.40 -1.78 16 7 C -0.13 -1.66 10.04 -39.54 -0.40 -2.06 16 8 C -0.09 -1.32 9.66 -39.62 -0.38 -1.70 16 9 C -0.04 -0.73 5.48 -104.40 -0.57 -1.31 16 10 C 0.05 0.93 4.68 -4.98 -0.02 0.90 16 11 N -0.48 -10.04 6.32 -246.09 -1.55 -11.59 16 12 C 0.02 0.38 5.05 -7.55 -0.04 0.34 16 13 C 0.04 1.01 3.76 -91.24 -0.34 0.67 16 14 C -0.51 -14.08 8.83 -34.44 -0.30 -14.39 16 15 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 16 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 17 N -0.88 -25.57 13.26 55.43 0.74 -24.84 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.01 -0.14 7.24 -7.55 -0.05 -0.20 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.88 7.75 -51.93 -0.40 0.47 16 27 H 0.08 1.05 7.75 -51.92 -0.40 0.64 16 28 H 0.12 1.45 5.88 -52.49 -0.31 1.14 16 29 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.56 8.04 -52.48 -0.42 1.14 16 32 H 0.07 1.17 7.94 -51.93 -0.41 0.76 16 33 H 0.05 1.01 6.45 -51.93 -0.33 0.67 16 34 H 0.06 1.44 5.95 -51.93 -0.31 1.13 16 35 H 0.07 1.77 7.59 -51.93 -0.39 1.38 16 36 H 0.06 1.76 8.11 -51.93 -0.42 1.34 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 LS Contribution 325.33 15.07 4.90 4.90 Total: -1.00 -29.35 325.33 -11.22 -40.57 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.90 Total: 2.11 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -2.66 Total: -24.41 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.82 Total: -36.43 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -1.73 Total: -2.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.35 -11.22 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249437334.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.341 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds