Wall clock time and date at job start Mon Mar 30 2020 01:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81399 * 109.47341 * 2 1 4 4 C 1.76196 * 102.99753 * 179.97438 * 3 2 1 5 5 C 1.38991 * 120.08264 * 0.02562 * 4 3 2 6 6 C 1.38065 * 119.91907 * 179.97438 * 5 4 3 7 7 C 1.38324 * 120.08029 * 0.02562 * 6 5 4 8 8 C 1.38271 * 120.16157 * 359.97438 * 7 6 5 9 9 C 1.38108 * 120.08155 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.04039 * 180.02562 * 9 8 7 11 11 N 1.46894 * 109.46870 * 259.97540 * 10 9 8 12 12 C 1.47483 * 111.00331 * 265.96959 * 11 10 9 13 13 C 1.53512 * 87.93312 * 221.30011 * 12 11 10 14 14 C 1.50701 * 114.34223 * 139.68385 * 13 12 11 15 15 H 1.07998 * 120.00277 * 266.08029 * 14 13 12 16 16 C 1.37882 * 120.00152 * 86.06857 * 14 13 12 17 17 N 1.31512 * 119.99778 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00212 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46450 * 90.00561 * 18 16 14 20 20 H 1.48497 * 109.47161 * 210.00561 * 18 16 14 21 21 H 1.48496 * 109.47345 * 330.00977 * 18 16 14 22 22 C 1.47484 * 110.99788 * 170.00208 * 11 10 9 23 23 H 1.09001 * 109.47265 * 300.00605 * 1 2 3 24 24 H 1.09007 * 109.46377 * 59.99899 * 1 2 3 25 25 H 1.08994 * 109.47480 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46779 * 239.99443 * 2 1 3 27 27 H 1.09007 * 109.46377 * 120.00101 * 2 1 3 28 28 H 1.08001 * 120.04160 * 359.95370 * 5 4 3 29 29 H 1.08005 * 119.95297 * 179.72377 * 6 5 4 30 30 H 1.07996 * 119.91729 * 179.97438 * 7 6 5 31 31 H 1.08005 * 119.96251 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47201 * 19.97718 * 10 9 8 33 33 H 1.09006 * 109.46670 * 139.97741 * 10 9 8 34 34 H 1.09002 * 113.47031 * 336.06861 * 12 11 10 35 35 H 1.09003 * 113.47561 * 106.53087 * 12 11 10 36 36 H 1.08997 * 114.17234 * 272.37521 * 13 12 11 37 37 H 0.97001 * 120.00504 * 179.97438 * 17 16 14 38 38 H 1.09003 * 113.47464 * 253.47342 * 22 11 10 39 39 H 1.08999 * 113.47618 * 23.87753 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.8855 1.5115 0.0008 5 6 4.4421 0.2379 0.0007 6 6 5.8144 0.0861 0.0007 7 6 6.6351 1.1996 0.0014 8 6 6.0849 2.4681 0.0016 9 6 4.7131 2.6277 0.0015 10 6 4.1145 4.0108 0.0010 11 7 3.6987 4.3648 1.3647 12 6 2.2768 4.0408 1.5848 13 6 2.1473 5.3726 2.3372 14 6 0.8709 6.1230 2.0564 15 1 0.8475 6.8796 1.2862 16 6 -0.2673 5.8435 2.7828 17 7 -0.2388 4.9223 3.7210 18 14 -1.8492 6.7741 2.4354 19 1 -2.6317 6.0510 1.4009 20 1 -2.6495 6.8730 3.6823 21 1 -1.5240 8.1380 1.9464 22 6 3.3296 5.7900 1.4515 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.8019 -0.6319 0.0009 29 1 6.2475 -0.9033 0.0051 30 1 7.7081 1.0778 0.0019 31 1 6.7287 3.3353 0.0017 32 1 4.8565 4.7277 -0.3503 33 1 3.2479 4.0313 -0.6599 34 1 1.6929 4.0029 0.6651 35 1 2.1235 3.1673 2.2185 36 1 2.3852 5.3103 3.3990 37 1 -1.0393 4.7258 4.2324 38 1 4.0685 6.3990 1.9723 39 1 3.0274 6.2192 0.4962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249437334.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:31 Heat of formation + Delta-G solvation = 37.672341 kcal Electronic energy + Delta-G solvation = -19257.579095 eV Core-core repulsion = 16484.347220 eV Total energy + Delta-G solvation = -2773.231875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93570 -39.64051 -34.91237 -33.96970 -33.31011 -31.92605 -30.04284 -27.32521 -26.59226 -24.96206 -24.12401 -23.64583 -21.84241 -20.48755 -18.71750 -18.24566 -17.16096 -16.76841 -16.54984 -16.19561 -15.87908 -15.71528 -15.62094 -15.01909 -14.79992 -14.18900 -14.02347 -13.60883 -13.48301 -13.21242 -13.13764 -13.00147 -12.83821 -12.49465 -12.42448 -12.32042 -12.07825 -11.76925 -11.50558 -11.21135 -10.97743 -10.84716 -10.58522 -10.32176 -9.80339 -9.56503 -8.24836 -8.11403 -6.22474 0.31417 0.42832 0.65272 1.42696 1.43079 1.53823 1.57307 2.43879 2.74515 3.17357 3.50061 3.77415 3.92118 3.94639 3.98938 4.08952 4.27439 4.34624 4.41846 4.44930 4.54115 4.60509 4.70173 4.77349 4.77727 4.83784 4.87363 4.91165 4.97949 5.08963 5.17113 5.31602 5.38534 5.48237 5.57923 5.65175 5.65968 5.87945 6.03919 6.32602 6.41004 6.85389 7.44824 8.98087 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.005780 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.609946 B = 4843.186465 C = 5981.356689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 S -0.149 6.149 4 C -0.091 4.091 5 C -0.146 4.146 6 C -0.105 4.105 7 C -0.127 4.127 8 C -0.098 4.098 9 C -0.074 4.074 10 C 0.057 3.943 11 N -0.478 5.478 12 C 0.043 3.957 13 C 0.018 3.982 14 C -0.529 4.529 15 H 0.058 0.942 16 C 0.018 3.982 17 N -0.920 5.920 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.008 3.992 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.135 0.865 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.027 0.973 37 H 0.262 0.738 38 H 0.075 0.925 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.301 -11.445 -10.016 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.262 4.262 3 S 0.096 5.904 4 C -0.205 4.205 5 C -0.170 4.170 6 C -0.124 4.124 7 C -0.147 4.147 8 C -0.119 4.119 9 C -0.080 4.080 10 C -0.072 4.072 11 N -0.200 5.200 12 C -0.086 4.086 13 C -0.002 4.002 14 C -0.567 4.567 15 H 0.076 0.924 16 C -0.182 4.182 17 N -0.558 5.558 18 Si 0.780 3.220 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.189 1.189 22 C -0.120 4.120 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.107 0.893 28 H 0.153 0.847 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.157 0.843 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.919 -10.868 -9.491 16.963 hybrid contribution -0.887 -0.306 -0.438 1.036 sum 8.031 -11.175 -9.929 16.969 Atomic orbital electron populations 1.21498 0.91481 1.03887 1.02417 1.23728 1.00897 0.95703 1.05875 1.86906 0.99095 1.12687 1.91739 1.21844 0.96435 0.96945 1.05244 1.21374 0.97030 0.94849 1.03705 1.21393 0.92309 1.00299 0.98430 1.21485 1.01315 0.91640 1.00256 1.21213 0.92910 0.99029 0.98701 1.19518 0.94104 0.93072 1.01321 1.21620 0.99645 0.94212 0.91694 1.68877 1.19967 1.08221 1.22944 1.23715 0.86906 0.99278 0.98750 1.20108 0.92795 0.93274 0.93990 1.21327 0.95350 1.20908 1.19108 0.92423 1.25786 1.02145 0.95796 0.94454 1.70106 1.29631 1.32981 1.23097 0.85616 0.79458 0.79363 0.77607 1.20119 1.20825 1.18911 1.23860 0.97847 0.90644 0.99694 0.93418 0.91989 0.88197 0.88133 0.89290 0.84695 0.82811 0.82817 0.84347 0.89062 0.94084 0.92819 0.93744 0.95473 0.92943 0.90622 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.92 71.98 0.71 -2.45 16 2 C -0.11 -2.85 5.05 71.98 0.36 -2.49 16 3 S -0.15 -5.20 16.05 -56.49 -0.91 -6.10 16 4 C -0.09 -2.98 6.11 22.62 0.14 -2.84 16 5 C -0.15 -3.80 9.36 22.41 0.21 -3.59 16 6 C -0.10 -2.24 10.04 22.25 0.22 -2.01 16 7 C -0.13 -2.72 10.04 22.30 0.22 -2.50 16 8 C -0.10 -2.62 9.66 22.25 0.21 -2.41 16 9 C -0.07 -2.44 5.48 -19.72 -0.11 -2.55 16 10 C 0.06 2.04 4.68 85.56 0.40 2.44 16 11 N -0.48 -20.47 6.32 -932.49 -5.89 -26.36 16 12 C 0.04 2.12 5.05 83.57 0.42 2.54 16 13 C 0.02 0.94 3.76 -11.20 -0.04 0.90 16 14 C -0.53 -29.77 8.83 25.60 0.23 -29.54 16 15 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 16 C 0.02 1.00 5.46 84.66 0.46 1.46 16 17 N -0.92 -55.06 13.26 21.45 0.28 -54.78 16 18 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.01 0.36 7.24 83.57 0.61 0.96 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.10 2.05 7.75 -2.39 -0.02 2.04 16 27 H 0.09 2.12 7.75 -2.39 -0.02 2.10 16 28 H 0.14 2.95 5.88 -2.91 -0.02 2.94 16 29 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.14 3.15 8.04 -2.91 -0.02 3.12 16 32 H 0.09 2.87 7.94 -2.39 -0.02 2.85 16 33 H 0.04 1.59 6.45 -2.38 -0.02 1.57 16 34 H 0.05 2.70 5.95 -2.39 -0.01 2.68 16 35 H 0.04 2.36 7.59 -2.39 -0.02 2.35 16 36 H 0.03 1.61 8.11 -2.39 -0.02 1.59 16 37 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.06 2.53 7.87 -2.39 -0.02 2.51 16 Total: -1.00 -65.85 325.33 0.59 -65.27 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 1.02 Total: 18.02 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 4.05 Total: -42.07 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -5.60 Total: -81.14 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -0.91 Total: -6.10 kcal Total: -65.85 0.59 -65.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249437334.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.938 kcal (2) G-P(sol) polarization free energy of solvation -65.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds