Wall clock time and date at job start Mon Mar 30 2020 02:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99818 * 2 1 4 4 H 1.48494 * 109.46978 * 269.99759 * 3 2 1 5 5 H 1.48500 * 109.46956 * 29.99733 * 3 2 1 6 6 H 1.48503 * 109.46985 * 149.99369 * 3 2 1 7 7 C 1.37875 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99955 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.53512 * 114.17104 * 179.97438 * 9 7 2 11 11 N 1.47483 * 87.93168 * 220.14063 * 10 9 7 12 12 C 1.46898 * 110.99873 * 138.70641 * 11 10 9 13 13 C 1.52999 * 109.47222 * 60.00206 * 12 11 10 14 14 C 1.52997 * 109.46991 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 14 13 17 17 F 1.39897 * 109.47422 * 300.00199 * 16 15 14 18 18 F 1.39900 * 109.47367 * 60.00293 * 16 15 14 19 19 F 1.39905 * 109.47157 * 180.02562 * 16 15 14 20 20 C 1.53002 * 109.46972 * 60.00459 * 15 14 13 21 21 C 1.52997 * 109.46817 * 299.99733 * 20 15 14 22 22 C 1.47478 * 87.83791 * 27.01027 * 11 10 9 23 23 H 0.96995 * 120.00710 * 0.02562 * 1 2 3 24 24 H 1.08993 * 113.25623 * 312.94564 * 9 7 2 25 25 H 1.08999 * 113.47277 * 105.37665 * 10 9 7 26 26 H 1.08995 * 113.53413 * 334.91235 * 10 9 7 27 27 H 1.08993 * 109.47084 * 299.99289 * 12 11 10 28 28 H 1.09002 * 109.46719 * 299.99704 * 13 12 11 29 29 H 1.08993 * 109.47839 * 59.99546 * 13 12 11 30 30 H 1.09001 * 109.47289 * 179.97438 * 14 13 12 31 31 H 1.09000 * 109.47611 * 59.99933 * 14 13 12 32 32 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 33 33 H 1.09002 * 109.47070 * 179.97438 * 20 15 14 34 34 H 1.08996 * 109.47407 * 59.99513 * 20 15 14 35 35 H 1.09001 * 109.47502 * 300.00518 * 21 20 15 36 36 H 1.09001 * 109.47289 * 180.02562 * 21 20 15 37 37 H 1.08998 * 113.47206 * 87.75405 * 22 11 10 38 38 H 1.09004 * 113.47632 * 218.22434 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.1498 -3.7437 0.0005 11 7 1.2051 -4.3602 -0.9496 12 6 1.9207 -5.0901 -2.0046 13 6 2.7721 -6.1937 -1.3736 14 6 3.5169 -6.9544 -2.4725 15 6 2.5056 -7.5786 -3.4360 16 6 3.2504 -8.3387 -4.5352 17 9 4.0773 -7.4540 -5.2358 18 9 4.0294 -9.3477 -3.9588 19 9 2.3256 -8.9090 -5.4166 20 6 1.6541 -6.4750 -4.0670 21 6 0.9093 -5.7144 -2.9681 22 6 0.8518 -2.9993 -1.3949 23 1 -0.4851 0.8399 -0.0004 24 1 0.4448 -2.5306 0.7332 25 1 2.1890 -4.2509 0.9645 26 1 3.1383 -3.5668 -0.4232 27 1 2.5652 -4.4010 -2.5501 28 1 3.4923 -5.7491 -0.6869 29 1 2.1276 -6.8829 -0.8281 30 1 4.1239 -7.7403 -2.0230 31 1 4.1615 -6.2655 -3.0184 32 1 1.8611 -8.2675 -2.8901 33 1 0.9339 -6.9197 -4.7538 34 1 2.2986 -5.7861 -4.6129 35 1 0.2648 -6.4033 -2.4221 36 1 0.3023 -4.9285 -3.4176 37 1 1.4937 -2.6227 -2.1912 38 1 -0.2089 -2.8756 -1.6134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255515633.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:00 Heat of formation + Delta-G solvation = -144.945991 kcal Electronic energy + Delta-G solvation = -22288.303293 eV Core-core repulsion = 18522.542882 eV Total energy + Delta-G solvation = -3765.760412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.24572 -47.73406 -47.70030 -39.73929 -37.47593 -32.86339 -31.46222 -30.95403 -27.68882 -25.38995 -24.98468 -23.40706 -22.48329 -21.18776 -19.90622 -18.67640 -18.39263 -18.36614 -17.64920 -16.70066 -15.27458 -15.03574 -14.74702 -14.51522 -14.37265 -14.25675 -14.09755 -13.87535 -13.87191 -13.80295 -13.52788 -13.32381 -12.70370 -12.31537 -11.95626 -11.82923 -11.63278 -11.39199 -11.12234 -11.01863 -10.98526 -10.84793 -10.53615 -10.39291 -9.98103 -9.64521 -9.16147 -8.93052 -8.45277 -8.00449 -6.07332 -4.11877 2.62922 3.27158 3.34548 3.37329 3.64039 3.85216 3.90268 4.37970 4.56367 4.60226 4.68667 5.05200 5.07533 5.19502 5.23499 5.31269 5.40824 5.41490 5.65835 5.84255 5.85002 5.89843 6.06451 6.10172 6.13983 6.21199 6.37317 6.49690 6.54631 6.66414 6.76034 7.12119 7.16827 7.70947 7.89708 8.07753 8.35622 8.91450 9.53366 11.02261 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.036648 B = 0.003603 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.834394 B = 7768.776325 C = 7824.472295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.040 3.960 10 C -0.003 4.003 11 N -0.481 5.481 12 C 0.047 3.953 13 C -0.108 4.108 14 C -0.116 4.116 15 C -0.129 4.129 16 C 0.452 3.548 17 F -0.183 7.183 18 F -0.186 7.186 19 F -0.186 7.186 20 C -0.117 4.117 21 C -0.100 4.100 22 C 0.006 3.994 23 H 0.262 0.738 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 -15.730 -7.810 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.021 3.979 10 C -0.132 4.132 11 N -0.203 5.203 12 C -0.062 4.062 13 C -0.146 4.146 14 C -0.154 4.154 15 C -0.149 4.149 16 C 0.398 3.602 17 F -0.164 7.164 18 F -0.168 7.168 19 F -0.168 7.168 20 C -0.155 4.155 21 C -0.138 4.138 22 C -0.123 4.123 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.181 -16.119 -7.624 18.315 hybrid contribution 1.255 1.201 -0.753 1.894 sum 5.436 -14.918 -8.378 17.952 Atomic orbital electron populations 1.69959 1.05993 1.26757 1.49646 1.25009 0.94804 0.99138 0.94592 0.86631 0.79964 0.83494 0.78144 1.20662 1.21131 1.19817 1.21033 0.92723 0.90305 1.51423 0.92490 1.20100 0.94317 0.90879 0.92578 1.23940 0.95757 0.97583 0.95909 1.68918 1.27151 1.14033 1.10193 1.22216 0.94487 0.95698 0.93814 1.21524 0.98713 0.97496 0.96833 1.21608 0.96834 1.00259 0.96683 1.22550 0.98773 0.99201 0.94354 1.20776 0.77972 0.77985 0.83498 1.93166 1.73833 1.68473 1.80970 1.93165 1.76580 1.62715 1.84324 1.93167 1.66036 1.85942 1.71616 1.21626 0.98826 0.96323 0.98704 1.21381 0.97687 0.99548 0.95213 1.24037 1.00092 0.86809 1.01342 0.92858 0.91851 0.92158 0.92883 0.93638 0.90980 0.91045 0.90724 0.90714 0.86781 0.90698 0.90737 0.91054 0.91099 0.92988 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 13.26 55.43 0.74 -24.51 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.83 8.83 -34.44 -0.30 -14.13 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.04 0.99 3.76 -91.24 -0.34 0.64 16 10 C 0.00 -0.06 6.01 -7.54 -0.05 -0.11 16 11 N -0.48 -9.12 6.14 -236.57 -1.45 -10.57 16 12 C 0.05 0.72 1.60 -67.71 -0.11 0.61 16 13 C -0.11 -1.38 5.10 -26.73 -0.14 -1.51 16 14 C -0.12 -1.23 4.96 -26.73 -0.13 -1.36 16 15 C -0.13 -1.30 2.17 -90.62 -0.20 -1.49 16 16 C 0.45 4.82 2.69 37.16 0.10 4.92 16 17 F -0.18 -2.13 16.28 2.25 0.04 -2.09 16 18 F -0.19 -2.05 16.80 2.25 0.04 -2.01 16 19 F -0.19 -2.06 16.80 2.25 0.04 -2.02 16 20 C -0.12 -1.26 4.96 -26.73 -0.13 -1.39 16 21 C -0.10 -1.32 5.42 -26.73 -0.14 -1.46 16 22 C 0.01 0.13 7.07 -7.54 -0.05 0.08 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.06 1.71 8.11 -51.93 -0.42 1.29 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.05 1.06 7.61 -51.93 -0.40 0.66 16 27 H 0.05 0.75 7.52 -51.93 -0.39 0.36 16 28 H 0.07 0.96 7.03 -51.93 -0.37 0.60 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.71 7.80 -51.93 -0.41 0.31 16 31 H 0.07 0.82 7.80 -51.93 -0.41 0.42 16 32 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.73 7.80 -51.93 -0.41 0.33 16 34 H 0.07 0.83 7.80 -51.93 -0.41 0.43 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 37 H 0.05 1.17 7.50 -51.93 -0.39 0.78 16 38 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -27.35 312.00 -8.18 -35.53 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.66 Total: -1.32 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -1.59 Total: -13.47 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.72 Total: -35.08 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.11 Total: -6.13 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.35 -8.18 -35.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255515633.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.419 kcal (2) G-P(sol) polarization free energy of solvation -27.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds