Wall clock time and date at job start Mon Mar 30 2020 02:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99818 * 2 1 4 4 H 1.48494 * 109.46978 * 269.99759 * 3 2 1 5 5 H 1.48500 * 109.46956 * 29.99733 * 3 2 1 6 6 H 1.48503 * 109.46985 * 149.99369 * 3 2 1 7 7 C 1.37875 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99955 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.53512 * 114.17104 * 179.97438 * 9 7 2 11 11 N 1.47483 * 87.93168 * 220.14063 * 10 9 7 12 12 C 1.46898 * 110.99873 * 138.70641 * 11 10 9 13 13 C 1.52999 * 109.47222 * 60.00206 * 12 11 10 14 14 C 1.52997 * 109.46991 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 14 13 17 17 F 1.39897 * 109.47422 * 300.00199 * 16 15 14 18 18 F 1.39900 * 109.47367 * 60.00293 * 16 15 14 19 19 F 1.39905 * 109.47157 * 180.02562 * 16 15 14 20 20 C 1.53002 * 109.46972 * 60.00459 * 15 14 13 21 21 C 1.52997 * 109.46817 * 299.99733 * 20 15 14 22 22 C 1.47478 * 87.83791 * 27.01027 * 11 10 9 23 23 H 0.96995 * 120.00710 * 0.02562 * 1 2 3 24 24 H 1.08993 * 113.25623 * 312.94564 * 9 7 2 25 25 H 1.08999 * 113.47277 * 105.37665 * 10 9 7 26 26 H 1.08995 * 113.53413 * 334.91235 * 10 9 7 27 27 H 1.08993 * 109.47084 * 299.99289 * 12 11 10 28 28 H 1.09002 * 109.46719 * 299.99704 * 13 12 11 29 29 H 1.08993 * 109.47839 * 59.99546 * 13 12 11 30 30 H 1.09001 * 109.47289 * 179.97438 * 14 13 12 31 31 H 1.09000 * 109.47611 * 59.99933 * 14 13 12 32 32 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 33 33 H 1.09002 * 109.47070 * 179.97438 * 20 15 14 34 34 H 1.08996 * 109.47407 * 59.99513 * 20 15 14 35 35 H 1.09001 * 109.47502 * 300.00518 * 21 20 15 36 36 H 1.09001 * 109.47289 * 180.02562 * 21 20 15 37 37 H 1.08998 * 113.47206 * 87.75405 * 22 11 10 38 38 H 1.09004 * 113.47632 * 218.22434 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.1498 -3.7437 0.0005 11 7 1.2051 -4.3602 -0.9496 12 6 1.9207 -5.0901 -2.0046 13 6 2.7721 -6.1937 -1.3736 14 6 3.5169 -6.9544 -2.4725 15 6 2.5056 -7.5786 -3.4360 16 6 3.2504 -8.3387 -4.5352 17 9 4.0773 -7.4540 -5.2358 18 9 4.0294 -9.3477 -3.9588 19 9 2.3256 -8.9090 -5.4166 20 6 1.6541 -6.4750 -4.0670 21 6 0.9093 -5.7144 -2.9681 22 6 0.8518 -2.9993 -1.3949 23 1 -0.4851 0.8399 -0.0004 24 1 0.4448 -2.5306 0.7332 25 1 2.1890 -4.2509 0.9645 26 1 3.1383 -3.5668 -0.4232 27 1 2.5652 -4.4010 -2.5501 28 1 3.4923 -5.7491 -0.6869 29 1 2.1276 -6.8829 -0.8281 30 1 4.1239 -7.7403 -2.0230 31 1 4.1615 -6.2655 -3.0184 32 1 1.8611 -8.2675 -2.8901 33 1 0.9339 -6.9197 -4.7538 34 1 2.2986 -5.7861 -4.6129 35 1 0.2648 -6.4033 -2.4221 36 1 0.3023 -4.9285 -3.4176 37 1 1.4937 -2.6227 -2.1912 38 1 -0.2089 -2.8756 -1.6134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255515633.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:59 Heat of formation + Delta-G solvation = -160.578920 kcal Electronic energy + Delta-G solvation = -22288.981188 eV Core-core repulsion = 18522.542882 eV Total energy + Delta-G solvation = -3766.438306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.09160 -48.57358 -48.56033 -41.18342 -38.69964 -34.76268 -32.79877 -31.92177 -29.29654 -26.80709 -26.63360 -24.84431 -23.52773 -22.30481 -20.98695 -20.44570 -19.28631 -19.21665 -18.65975 -18.46244 -16.87525 -16.37360 -16.18915 -15.63083 -15.58671 -15.31914 -15.13256 -14.98558 -14.73013 -14.72454 -14.61683 -14.50429 -14.13918 -13.47768 -13.30802 -13.27995 -13.06329 -12.96363 -12.72451 -12.37657 -12.28977 -12.11205 -11.98795 -11.78027 -11.31634 -11.11239 -11.00283 -10.73056 -10.47382 -9.64419 -8.14920 -6.26083 1.42362 1.43514 1.53756 1.79298 2.42514 2.79367 3.00457 3.08115 3.14506 3.30038 3.65703 3.70313 4.04754 4.12906 4.13500 4.31089 4.33624 4.36189 4.45992 4.52375 4.61860 4.68339 4.76961 4.94318 4.94741 4.98746 5.06408 5.11935 5.15837 5.21812 5.26622 5.40410 5.60181 5.63728 5.86754 6.31149 6.45970 6.83567 7.42587 8.94829 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.036648 B = 0.003603 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.834394 B = 7768.776325 C = 7824.472295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.017 3.983 10 C 0.015 3.985 11 N -0.475 5.475 12 C 0.043 3.957 13 C -0.101 4.101 14 C -0.110 4.110 15 C -0.124 4.124 16 C 0.455 3.545 17 F -0.190 7.190 18 F -0.187 7.187 19 F -0.188 7.188 20 C -0.110 4.110 21 C -0.095 4.095 22 C 0.019 3.981 23 H 0.262 0.738 24 H 0.030 0.970 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.029 -16.946 -8.318 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.114 4.114 11 N -0.197 5.197 12 C -0.066 4.066 13 C -0.139 4.139 14 C -0.148 4.148 15 C -0.144 4.144 16 C 0.402 3.598 17 F -0.171 7.171 18 F -0.168 7.168 19 F -0.169 7.169 20 C -0.148 4.148 21 C -0.133 4.133 22 C -0.110 4.110 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.387 -17.352 -8.135 19.907 hybrid contribution 0.870 1.532 -0.593 1.859 sum 6.257 -15.820 -8.728 19.120 Atomic orbital electron populations 1.70084 1.07510 1.27561 1.50908 1.25805 0.95575 1.02624 0.94343 0.85597 0.78832 0.79200 0.78290 1.20102 1.20946 1.18940 1.21378 0.92959 0.91554 1.50972 0.92387 1.20077 0.94660 0.92233 0.93214 1.23724 0.95286 0.95437 0.96968 1.68849 1.27581 1.12283 1.11003 1.22345 0.95042 0.96020 0.93206 1.21453 0.98357 0.96727 0.97358 1.21550 0.96775 1.00418 0.96059 1.22528 0.98622 0.99133 0.94068 1.20777 0.77802 0.77859 0.83409 1.93159 1.74083 1.68706 1.81179 1.93167 1.76620 1.62747 1.84293 1.93168 1.66056 1.85969 1.71724 1.21549 0.98992 0.96308 0.97985 1.21315 0.97242 0.99372 0.95392 1.23726 0.98821 0.88799 0.99682 0.92864 0.95208 0.90880 0.92325 0.94819 0.91470 0.90335 0.88986 0.91104 0.84967 0.89233 0.91173 0.90454 0.92540 0.93592 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.76 13.26 21.45 0.28 -53.47 16 2 C 0.02 0.87 5.46 84.65 0.46 1.34 16 3 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.53 -28.77 8.83 25.60 0.23 -28.54 16 8 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.02 0.87 3.76 -11.19 -0.04 0.82 16 10 C 0.01 0.58 6.01 83.58 0.50 1.09 16 11 N -0.48 -17.84 6.14 -902.39 -5.54 -23.39 16 12 C 0.04 1.26 1.60 44.92 0.07 1.33 16 13 C -0.10 -2.34 5.10 30.59 0.16 -2.19 16 14 C -0.11 -2.02 4.96 30.59 0.15 -1.87 16 15 C -0.12 -2.13 2.17 -10.79 -0.02 -2.15 16 16 C 0.46 8.51 2.69 71.98 0.19 8.71 16 17 F -0.19 -4.02 16.28 44.97 0.73 -3.29 16 18 F -0.19 -3.60 16.80 44.97 0.76 -2.85 16 19 F -0.19 -3.68 16.80 44.97 0.76 -2.92 16 20 C -0.11 -2.13 4.96 30.59 0.15 -1.98 16 21 C -0.10 -2.36 5.42 30.60 0.17 -2.19 16 22 C 0.02 0.86 7.07 83.58 0.59 1.46 16 23 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 24 H 0.03 1.68 8.11 -2.39 -0.02 1.66 16 25 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.06 2.28 7.61 -2.39 -0.02 2.26 16 27 H 0.03 1.09 7.52 -2.39 -0.02 1.07 16 28 H 0.07 1.64 7.03 -2.39 -0.02 1.62 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 1.43 7.80 -2.39 -0.02 1.41 16 31 H 0.07 1.39 7.80 -2.39 -0.02 1.37 16 32 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.51 7.80 -2.39 -0.02 1.49 16 34 H 0.07 1.44 7.80 -2.39 -0.02 1.42 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.56 8.04 -2.39 -0.02 1.54 16 37 H 0.05 2.11 7.50 -2.39 -0.02 2.09 16 38 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -58.86 312.00 2.66 -56.19 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.05 Total: 9.03 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 2.61 Total: -24.19 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -5.26 Total: -76.86 kcal Atomic # 9 Polarization: -11.30 SS G_CDS: 2.24 Total: -9.05 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -58.86 2.66 -56.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255515633.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.384 kcal (2) G-P(sol) polarization free energy of solvation -58.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds