Wall clock time and date at job start Mon Mar 30 2020 01:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47144 * 2 1 4 4 C 1.50704 * 109.47077 * 239.99945 * 2 1 3 5 5 H 1.07999 * 119.99828 * 240.00117 * 4 2 1 6 6 C 1.37872 * 119.99875 * 59.99901 * 4 2 1 7 7 N 1.31519 * 120.00281 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99854 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47224 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47083 * 120.00249 * 8 6 4 11 11 H 1.48497 * 109.47288 * 240.00091 * 8 6 4 12 12 N 1.46895 * 109.47064 * 120.00080 * 2 1 3 13 13 C 1.46900 * 111.00226 * 58.95106 * 12 2 1 14 14 C 1.38540 * 110.99975 * 294.99517 * 12 2 1 15 15 N 1.31259 * 126.37164 * 70.64026 * 14 12 2 16 16 N 1.28504 * 110.10688 * 179.97438 * 15 14 12 17 17 C 1.31264 * 109.95380 * 359.97438 * 16 15 14 18 18 C 1.47877 * 126.47750 * 179.97438 * 17 16 15 19 19 C 1.35779 * 126.39975 * 359.68975 * 18 17 16 20 20 O 1.34656 * 106.95142 * 179.90421 * 19 18 17 21 21 C 1.33960 * 108.12062 * 0.36020 * 20 19 18 22 22 N 1.30078 * 109.18349 * 359.77581 * 21 20 19 23 23 N 1.36600 * 126.38081 * 250.32825 * 14 12 2 24 24 C 1.46509 * 127.17536 * 0.02562 * 23 14 12 25 25 H 1.09000 * 109.47144 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46960 * 300.00197 * 1 2 3 27 27 H 1.09002 * 109.47020 * 60.00046 * 1 2 3 28 28 H 0.96999 * 120.00039 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.46870 * 54.23621 * 13 12 2 30 30 H 1.09005 * 109.47056 * 174.23181 * 13 12 2 31 31 H 1.08994 * 109.47254 * 294.23482 * 13 12 2 32 32 H 1.08005 * 126.52927 * 0.03130 * 19 18 17 33 33 H 1.08004 * 125.40535 * 179.76926 * 21 20 19 34 34 H 1.09000 * 109.46847 * 95.38668 * 24 23 14 35 35 H 1.08998 * 109.47024 * 215.38951 * 24 23 14 36 36 H 1.09003 * 109.47217 * 335.39238 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1474 -2.2864 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0196 -0.6925 1.1994 13 6 1.5282 -2.0761 1.2460 14 6 1.6699 -0.0024 2.3487 15 7 0.4622 0.1137 2.8497 16 7 0.4952 0.8202 3.9226 17 6 1.7272 1.1981 4.1725 18 6 2.1795 2.0228 5.3135 19 6 1.3966 2.5365 6.2968 20 8 2.2075 3.2165 7.1294 21 6 3.4585 3.1260 6.6587 22 7 3.4552 2.4132 5.5706 23 7 2.5183 0.6788 3.1745 24 6 3.9683 0.8274 3.0267 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7086 1.1612 -3.4844 29 1 1.7887 -2.5855 0.3182 30 1 1.9865 -2.5963 2.0871 31 1 0.4451 -2.0731 1.3671 32 1 0.3273 2.4199 6.3940 33 1 4.3311 3.5739 7.1109 34 1 4.1872 1.7661 2.5177 35 1 4.4355 0.8304 4.0114 36 1 4.3608 -0.0037 2.4407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262900533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:53 Heat of formation + Delta-G solvation = 129.098600 kcal Electronic energy + Delta-G solvation = -21559.795723 eV Core-core repulsion = 18276.527925 eV Total energy + Delta-G solvation = -3283.267799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.51309 -42.39155 -37.26744 -35.28025 -34.31924 -32.86826 -31.31041 -29.09984 -28.25870 -27.20863 -25.30436 -25.22506 -23.69861 -22.96331 -21.34458 -20.69534 -19.42134 -18.01832 -16.86061 -16.51934 -16.26895 -15.87699 -15.52024 -15.21454 -14.70773 -14.61145 -13.70778 -13.57481 -13.22627 -12.88529 -12.52673 -12.30023 -11.73837 -11.54708 -11.35521 -11.24503 -10.98058 -10.89169 -10.80677 -10.59505 -10.27398 -10.17406 -9.98731 -9.83951 -9.53725 -8.92096 -8.47689 -8.23572 -7.73270 -6.08760 -4.15198 1.03812 1.80634 2.50251 2.68820 2.71681 3.26287 3.34234 3.37348 3.39837 3.62712 4.32671 4.51132 4.63884 4.71031 5.14940 5.23534 5.33681 5.49176 5.53192 5.63372 5.76755 5.85756 5.96895 6.13841 6.34518 6.40005 6.59135 6.81719 6.95252 7.03909 7.13930 7.35697 7.49185 7.61975 7.73414 7.89564 8.23367 8.42642 8.88180 9.08261 9.49761 10.98104 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.034724 B = 0.004221 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.157979 B = 6631.305199 C = 6798.661610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.223 3.777 3 H 0.037 0.963 4 C -0.507 4.507 5 H 0.067 0.933 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.470 5.470 13 C 0.045 3.955 14 C 0.387 3.613 15 N -0.307 5.307 16 N -0.272 5.272 17 C 0.223 3.777 18 C 0.062 3.938 19 C -0.015 4.015 20 O -0.202 6.202 21 C 0.180 3.820 22 N -0.480 5.480 23 N -0.456 5.456 24 C 0.088 3.912 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.087 0.913 28 H 0.262 0.738 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.230 0.770 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.533 3.015 16.611 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.119 3.881 3 H 0.054 0.946 4 C -0.546 4.546 5 H 0.085 0.915 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.729 3.271 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.197 5.197 13 C -0.102 4.102 14 C 0.031 3.969 15 N -0.152 5.152 16 N -0.117 5.117 17 C -0.042 4.042 18 C -0.057 4.057 19 C -0.089 4.089 20 O -0.087 6.087 21 C -0.049 4.049 22 N -0.210 5.210 23 N -0.148 5.148 24 C -0.055 4.055 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.246 0.754 33 H 0.269 0.731 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.078 2.811 16.214 17.222 hybrid contribution 0.493 0.042 -0.748 0.897 sum 5.571 2.853 15.466 16.684 Atomic orbital electron populations 1.22441 0.98783 1.00240 1.01772 1.19434 0.91433 0.93943 0.83273 0.94552 1.21036 1.31497 1.12923 0.89141 0.91472 1.24917 0.94978 0.95067 0.99052 1.69922 1.36359 1.22815 1.23596 0.86391 0.78563 0.79569 0.82588 1.19625 1.20989 1.21023 1.59432 1.59270 1.02788 0.98194 1.22256 0.98878 0.86857 1.02250 1.22905 0.84604 0.95849 0.93503 1.74745 1.17941 1.17254 1.05272 1.74237 1.14864 1.11694 1.10883 1.20898 0.88351 1.03073 0.91885 1.18435 0.89067 1.02665 0.95548 1.25075 0.97571 0.96312 0.89974 1.84502 1.19164 1.58022 1.47016 1.28021 0.86688 0.98593 0.91556 1.70656 1.21133 1.13782 1.15394 1.46221 1.09975 1.39229 1.19366 1.22031 0.75329 1.04137 1.04038 0.94789 0.94868 0.89446 0.92818 0.89048 0.93704 0.93890 0.75393 0.73063 0.90596 0.89058 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 8.19 37.16 0.30 -4.11 16 2 C 0.22 5.69 2.32 -68.87 -0.16 5.53 16 3 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 4 C -0.51 -13.45 7.86 -34.44 -0.27 -13.72 16 5 H 0.07 1.74 6.78 -52.49 -0.36 1.38 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.47 -10.39 4.74 -176.04 -0.83 -11.23 16 13 C 0.05 0.90 8.68 60.06 0.52 1.42 16 14 C 0.39 8.29 6.21 -318.68 -1.98 6.31 16 15 N -0.31 -6.83 9.76 30.34 0.30 -6.54 16 16 N -0.27 -5.50 12.20 32.59 0.40 -5.10 16 17 C 0.22 4.02 7.93 -153.79 -1.22 2.80 16 18 C 0.06 0.89 6.96 -83.01 -0.58 0.31 16 19 C -0.02 -0.17 12.13 29.85 0.36 0.19 16 20 O -0.20 -1.88 10.75 5.65 0.06 -1.82 16 21 C 0.18 1.48 13.20 52.02 0.69 2.16 16 22 N -0.48 -5.92 9.75 -11.45 -0.11 -6.03 16 23 N -0.46 -8.54 3.24 -122.01 -0.39 -8.93 16 24 C 0.09 1.31 10.72 59.85 0.64 1.95 16 25 H 0.03 0.83 6.52 -51.93 -0.34 0.49 16 26 H 0.03 0.83 5.95 -51.93 -0.31 0.52 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 29 H 0.09 1.83 6.37 -51.93 -0.33 1.50 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.89 6.42 -51.93 -0.33 0.55 16 32 H 0.23 1.99 8.06 -52.48 -0.42 1.56 16 33 H 0.25 0.67 8.06 -52.48 -0.42 0.25 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.20 6.98 -51.93 -0.36 0.83 16 36 H 0.10 1.42 8.11 -51.93 -0.42 1.00 16 LS Contribution 304.13 15.07 4.58 4.58 Total: -1.00 -32.60 304.13 -6.19 -38.79 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.01 Total: 0.57 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.78 Total: 4.43 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.02 Total: -62.30 kcal Atomic # 8 Polarization: -1.88 SS G_CDS: 0.06 Total: -1.82 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.60 -6.19 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262900533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.891 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds