Wall clock time and date at job start Mon Mar 30 2020 01:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47144 * 2 1 4 4 C 1.50704 * 109.47077 * 239.99945 * 2 1 3 5 5 H 1.07999 * 119.99828 * 240.00117 * 4 2 1 6 6 C 1.37872 * 119.99875 * 59.99901 * 4 2 1 7 7 N 1.31519 * 120.00281 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99854 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47224 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47083 * 120.00249 * 8 6 4 11 11 H 1.48497 * 109.47288 * 240.00091 * 8 6 4 12 12 N 1.46895 * 109.47064 * 120.00080 * 2 1 3 13 13 C 1.46900 * 111.00226 * 58.95106 * 12 2 1 14 14 C 1.38540 * 110.99975 * 294.99517 * 12 2 1 15 15 N 1.31259 * 126.37164 * 70.64026 * 14 12 2 16 16 N 1.28504 * 110.10688 * 179.97438 * 15 14 12 17 17 C 1.31264 * 109.95380 * 359.97438 * 16 15 14 18 18 C 1.47877 * 126.47750 * 179.97438 * 17 16 15 19 19 C 1.35779 * 126.39975 * 359.68975 * 18 17 16 20 20 O 1.34656 * 106.95142 * 179.90421 * 19 18 17 21 21 C 1.33960 * 108.12062 * 0.36020 * 20 19 18 22 22 N 1.30078 * 109.18349 * 359.77581 * 21 20 19 23 23 N 1.36600 * 126.38081 * 250.32825 * 14 12 2 24 24 C 1.46509 * 127.17536 * 0.02562 * 23 14 12 25 25 H 1.09000 * 109.47144 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46960 * 300.00197 * 1 2 3 27 27 H 1.09002 * 109.47020 * 60.00046 * 1 2 3 28 28 H 0.96999 * 120.00039 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.46870 * 54.23621 * 13 12 2 30 30 H 1.09005 * 109.47056 * 174.23181 * 13 12 2 31 31 H 1.08994 * 109.47254 * 294.23482 * 13 12 2 32 32 H 1.08005 * 126.52927 * 0.03130 * 19 18 17 33 33 H 1.08004 * 125.40535 * 179.76926 * 21 20 19 34 34 H 1.09000 * 109.46847 * 95.38668 * 24 23 14 35 35 H 1.08998 * 109.47024 * 215.38951 * 24 23 14 36 36 H 1.09003 * 109.47217 * 335.39238 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1474 -2.2864 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0196 -0.6925 1.1994 13 6 1.5282 -2.0761 1.2460 14 6 1.6699 -0.0024 2.3487 15 7 0.4622 0.1137 2.8497 16 7 0.4952 0.8202 3.9226 17 6 1.7272 1.1981 4.1725 18 6 2.1795 2.0228 5.3135 19 6 1.3966 2.5365 6.2968 20 8 2.2075 3.2165 7.1294 21 6 3.4585 3.1260 6.6587 22 7 3.4552 2.4132 5.5706 23 7 2.5183 0.6788 3.1745 24 6 3.9683 0.8274 3.0267 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7086 1.1612 -3.4844 29 1 1.7887 -2.5855 0.3182 30 1 1.9865 -2.5963 2.0871 31 1 0.4451 -2.0731 1.3671 32 1 0.3273 2.4199 6.3940 33 1 4.3311 3.5739 7.1109 34 1 4.1872 1.7661 2.5177 35 1 4.4355 0.8304 4.0114 36 1 4.3608 -0.0037 2.4407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262900533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:53 Heat of formation + Delta-G solvation = 106.554886 kcal Electronic energy + Delta-G solvation = -21560.773292 eV Core-core repulsion = 18276.527925 eV Total energy + Delta-G solvation = -3284.245367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.39225 -43.83724 -39.05425 -36.33982 -35.60959 -34.81438 -32.47477 -30.90064 -29.69345 -28.53903 -27.30441 -26.95479 -24.86687 -23.90319 -22.99926 -21.85873 -21.10049 -19.01242 -18.43394 -17.83816 -17.65152 -17.40256 -16.91229 -16.49764 -16.39042 -15.62094 -15.41872 -14.92416 -14.55464 -14.31717 -14.23124 -13.70128 -13.37813 -13.13124 -13.03645 -12.74438 -12.74192 -12.57996 -12.45961 -12.13279 -12.02890 -11.87370 -11.60556 -11.22547 -10.94047 -10.76163 -10.54607 -9.65858 -9.40104 -8.14808 -6.28678 -0.00592 0.81002 1.19668 1.38141 1.45230 1.47119 1.59188 1.84125 2.06267 2.41961 2.68153 3.05208 3.16152 3.51352 3.76255 3.94206 4.11335 4.30780 4.33217 4.49404 4.60108 4.63730 4.68441 4.69519 4.79576 4.95716 5.00366 5.06147 5.08469 5.19205 5.36255 5.58645 5.61023 5.76617 5.95739 6.18349 6.53488 6.56877 6.81078 7.40632 7.55209 8.92501 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.034724 B = 0.004221 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.157979 B = 6631.305199 C = 6798.661610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.234 3.766 3 H -0.003 1.003 4 C -0.517 4.517 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.970 3.030 9 H -0.260 1.260 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.467 5.467 13 C 0.050 3.950 14 C 0.361 3.639 15 N -0.333 5.333 16 N -0.301 5.301 17 C 0.244 3.756 18 C 0.016 3.984 19 C 0.012 3.988 20 O -0.195 6.195 21 C 0.210 3.790 22 N -0.513 5.513 23 N -0.460 5.460 24 C 0.089 3.911 25 H 0.036 0.964 26 H 0.028 0.972 27 H 0.062 0.938 28 H 0.263 0.737 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.248 0.752 33 H 0.307 0.693 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.164 3.145 18.271 19.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.128 3.872 3 H 0.015 0.985 4 C -0.555 4.555 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.795 3.205 9 H -0.184 1.184 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.193 5.193 13 C -0.097 4.097 14 C 0.005 3.995 15 N -0.178 5.178 16 N -0.144 5.144 17 C -0.022 4.022 18 C -0.102 4.102 19 C -0.064 4.064 20 O -0.080 6.080 21 C -0.018 4.018 22 N -0.242 5.242 23 N -0.151 5.151 24 C -0.052 4.052 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.264 0.736 33 H 0.322 0.678 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.721 2.922 17.888 19.331 hybrid contribution 0.042 0.148 -1.034 1.045 sum 6.763 3.069 16.854 18.418 Atomic orbital electron populations 1.22229 0.99165 0.99837 1.00205 1.19090 0.90895 0.92223 0.84942 0.98532 1.21289 1.31486 1.13056 0.89679 0.90869 1.25769 0.95024 0.95660 1.02137 1.70065 1.37480 1.24276 1.24289 0.85322 0.78004 0.78637 0.78553 1.18359 1.20811 1.20845 1.59289 1.59102 1.03334 0.97534 1.22261 0.98329 0.85965 1.03186 1.22825 0.85222 0.97511 0.93985 1.74598 1.18833 1.18132 1.06250 1.74143 1.16228 1.13079 1.10958 1.21567 0.87588 1.01205 0.91862 1.18387 0.90911 1.04969 0.95940 1.25394 0.98272 0.94140 0.88565 1.84572 1.19571 1.57478 1.46413 1.29219 0.87235 0.95709 0.89633 1.70597 1.20354 1.15744 1.17551 1.46424 1.11071 1.38592 1.19016 1.22192 0.73549 1.04147 1.05345 0.94465 0.95287 0.91952 0.92798 0.89178 0.91219 0.95015 0.73642 0.67829 0.90525 0.86908 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.22 8.19 71.98 0.59 -7.63 16 2 C 0.23 12.31 2.32 44.17 0.10 12.42 16 3 H 0.00 -0.19 8.11 -2.39 -0.02 -0.21 16 4 C -0.52 -27.70 7.86 25.60 0.20 -27.49 16 5 H 0.07 3.77 6.78 -2.91 -0.02 3.75 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.26 11.32 21.45 0.24 -53.02 16 8 Si 0.97 42.57 29.54 68.60 2.03 44.60 16 9 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.47 -21.00 4.74 -710.87 -3.37 -24.37 16 13 C 0.05 1.99 8.68 127.69 1.11 3.10 16 14 C 0.36 15.81 6.21 260.04 1.61 17.43 16 15 N -0.33 -15.24 9.76 -57.92 -0.57 -15.81 16 16 N -0.30 -12.34 12.20 -50.80 -0.62 -12.96 16 17 C 0.24 8.77 7.93 136.24 1.08 9.85 16 18 C 0.02 0.43 6.96 40.50 0.28 0.71 16 19 C 0.01 0.23 12.13 67.25 0.82 1.04 16 20 O -0.20 -2.90 10.75 -2.69 -0.03 -2.93 16 21 C 0.21 2.58 13.20 130.50 1.72 4.30 16 22 N -0.51 -11.33 9.75 -305.04 -2.98 -14.31 16 23 N -0.46 -17.30 3.24 -539.92 -1.75 -19.05 16 24 C 0.09 2.63 10.72 127.77 1.37 4.00 16 25 H 0.04 1.88 6.52 -2.39 -0.02 1.87 16 26 H 0.03 1.52 5.95 -2.39 -0.01 1.50 16 27 H 0.06 3.60 6.07 -2.39 -0.01 3.59 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.09 3.58 6.37 -2.39 -0.02 3.57 16 30 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.03 1.32 6.42 -2.39 -0.02 1.31 16 32 H 0.25 3.74 8.06 -2.91 -0.02 3.72 16 33 H 0.31 -0.16 8.06 -2.91 -0.02 -0.19 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.11 2.80 6.98 -2.39 -0.02 2.79 16 36 H 0.10 2.82 8.11 -2.39 -0.02 2.80 16 Total: -1.00 -72.87 304.13 3.41 -69.46 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.11 Total: 9.51 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 9.34 Total: 18.88 kcal Atomic # 7 Polarization: -130.48 SS G_CDS: -9.03 Total: -139.52 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -0.03 Total: -2.93 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -72.87 3.41 -69.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262900533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.014 kcal (2) G-P(sol) polarization free energy of solvation -72.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds