Wall clock time and date at job start Mon Mar 30 2020 01:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47604 * 2 1 4 4 C 1.50704 * 109.47518 * 119.99680 * 2 1 3 5 5 H 1.07997 * 120.00349 * 119.99569 * 4 2 1 6 6 C 1.37880 * 119.99637 * 300.00376 * 4 2 1 7 7 N 1.31512 * 120.00436 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99848 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47449 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47324 * 119.99708 * 8 6 4 11 11 H 1.48509 * 109.47343 * 240.00113 * 8 6 4 12 12 N 1.46904 * 109.47371 * 239.99502 * 2 1 3 13 13 C 1.46899 * 111.00115 * 183.95195 * 12 2 1 14 14 C 1.38536 * 110.99539 * 59.99883 * 12 2 1 15 15 N 1.31252 * 126.37488 * 58.97420 * 14 12 2 16 16 N 1.28504 * 110.10875 * 179.73731 * 15 14 12 17 17 C 1.31258 * 109.95158 * 359.97438 * 16 15 14 18 18 C 1.47881 * 126.47614 * 179.97438 * 17 16 15 19 19 C 1.35783 * 126.40290 * 359.69194 * 18 17 16 20 20 O 1.34649 * 106.94852 * 179.84281 * 19 18 17 21 21 C 1.33961 * 108.12967 * 0.42436 * 20 19 18 22 22 N 1.30088 * 109.17638 * 359.73195 * 21 20 19 23 23 N 1.36606 * 126.37306 * 238.65433 * 14 12 2 24 24 C 1.46497 * 127.17686 * 0.24846 * 23 14 12 25 25 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47146 * 299.99863 * 1 2 3 27 27 H 1.08998 * 109.47394 * 60.00491 * 1 2 3 28 28 H 0.96996 * 120.00672 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47406 * 302.06187 * 13 12 2 30 30 H 1.09005 * 109.47137 * 62.05893 * 13 12 2 31 31 H 1.08995 * 109.47330 * 182.06174 * 13 12 2 32 32 H 1.07997 * 126.52303 * 359.97438 * 19 18 17 33 33 H 1.07997 * 125.41064 * 179.75318 * 21 20 19 34 34 H 1.08999 * 109.47021 * 95.46755 * 24 23 14 35 35 H 1.08999 * 109.46793 * 215.46205 * 24 23 14 36 36 H 1.08996 * 109.47451 * 335.46136 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1200 4.0080 9 1 3.1456 -2.2874 3.6040 10 1 3.1466 -0.1870 4.8165 11 1 1.1661 -1.5865 4.8162 12 7 2.0197 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5754 -0.0645 -2.3515 15 7 1.8037 1.1812 -2.6964 16 7 1.2500 1.4349 -3.8279 17 6 0.6343 0.3654 -4.2750 18 6 -0.1212 0.2507 -5.5412 19 6 -0.3130 1.2346 -6.4570 20 8 -1.0488 0.7057 -7.4530 21 6 -1.3085 -0.5721 -7.1461 22 7 -0.7580 -0.8573 -6.0025 23 7 0.8234 -0.6280 -3.3429 24 6 0.3234 -2.0038 -3.4014 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.7088 1.1616 3.4843 29 1 3.9183 0.2035 -1.1222 30 1 3.8010 -1.3842 -0.3263 31 1 3.8234 -1.2787 -2.1030 32 1 0.0564 2.2478 -6.3988 33 1 -1.8833 -1.2568 -7.7521 34 1 -0.6968 -2.0361 -3.0191 35 1 0.3355 -2.3511 -4.4345 36 1 0.9596 -2.6477 -2.7942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262900534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:55 Heat of formation + Delta-G solvation = 125.247322 kcal Electronic energy + Delta-G solvation = -21559.362658 eV Core-core repulsion = 18275.927856 eV Total energy + Delta-G solvation = -3283.434802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.51918 -42.38860 -37.07406 -35.28887 -34.29676 -32.92885 -31.30659 -29.41123 -28.53817 -27.24432 -25.55751 -24.38287 -23.73449 -22.94291 -21.56438 -20.71054 -19.42592 -17.99060 -16.86370 -16.65599 -16.26454 -15.96180 -15.47286 -15.12198 -14.72323 -14.57369 -13.77078 -13.57507 -13.15001 -13.05875 -12.53902 -12.34881 -11.91637 -11.69282 -11.30396 -11.15947 -10.98202 -10.93820 -10.78115 -10.37707 -10.30980 -10.15423 -10.13526 -9.89423 -9.53949 -9.09955 -8.54048 -8.19849 -7.76352 -6.08762 -4.15512 1.03369 1.80025 2.49590 2.68045 2.71967 3.26578 3.34472 3.37541 3.39875 3.61879 4.32056 4.50406 4.62208 4.69791 5.13035 5.23792 5.32911 5.47230 5.52565 5.63046 5.74125 5.81503 5.95856 6.11359 6.30093 6.38606 6.58513 6.72820 6.83015 6.93699 7.09577 7.34856 7.35667 7.62384 7.72109 7.89567 8.15814 8.41698 8.88064 9.08187 9.49454 10.98294 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.039094 B = 0.004127 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.050355 B = 6783.158580 C = 6811.002925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.225 3.775 3 H 0.023 0.977 4 C -0.511 4.511 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.473 5.473 13 C 0.050 3.950 14 C 0.393 3.607 15 N -0.312 5.312 16 N -0.270 5.270 17 C 0.222 3.778 18 C 0.062 3.938 19 C -0.015 4.015 20 O -0.202 6.202 21 C 0.179 3.821 22 N -0.480 5.480 23 N -0.456 5.456 24 C 0.088 3.912 25 H 0.033 0.967 26 H 0.092 0.908 27 H 0.001 0.999 28 H 0.262 0.738 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.230 0.770 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.588 -4.465 -17.591 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.120 3.880 3 H 0.041 0.959 4 C -0.550 4.550 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.729 3.271 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.201 5.201 13 C -0.097 4.097 14 C 0.037 3.963 15 N -0.157 5.157 16 N -0.114 5.114 17 C -0.042 4.042 18 C -0.057 4.057 19 C -0.089 4.089 20 O -0.087 6.087 21 C -0.049 4.049 22 N -0.210 5.210 23 N -0.148 5.148 24 C -0.054 4.054 25 H 0.052 0.948 26 H 0.111 0.889 27 H 0.020 0.980 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.246 0.754 33 H 0.269 0.731 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.388 -4.050 -17.061 17.860 hybrid contribution -0.082 -0.534 0.571 0.786 sum -3.470 -4.584 -16.490 17.464 Atomic orbital electron populations 1.21812 0.97557 0.99381 1.00148 1.19460 0.92381 0.93061 0.83054 0.95915 1.21085 1.31931 1.12716 0.89253 0.91421 1.24920 0.94997 0.94990 0.99068 1.69906 1.36333 1.22703 1.23656 0.86389 0.78583 0.79535 0.82582 1.19641 1.20966 1.20995 1.59285 1.11633 1.50699 0.98488 1.22218 0.84692 1.01278 1.01542 1.22820 0.94258 0.88199 0.90988 1.74688 1.21701 1.12251 1.07058 1.74238 1.10354 1.20825 1.06002 1.20912 1.04753 0.86965 0.91612 1.18436 1.02624 0.90630 0.94039 1.25081 0.96902 1.00539 0.86378 1.84500 1.55053 1.26397 1.42737 1.28020 1.00278 0.82687 0.93888 1.70656 1.11947 1.27894 1.10476 1.46250 1.39788 1.12405 1.16378 1.22005 1.00706 0.78498 1.04238 0.94825 0.88902 0.98039 0.92756 0.94463 0.89047 0.93772 0.75381 0.73069 0.90616 0.89096 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.84 37.16 0.33 -3.00 16 2 C 0.22 5.77 1.99 -68.86 -0.14 5.63 16 3 H 0.02 0.67 8.08 -51.93 -0.42 0.25 16 4 C -0.51 -13.59 7.95 -34.44 -0.27 -13.87 16 5 H 0.07 1.74 6.40 -52.49 -0.34 1.41 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.47 -10.50 4.62 -176.04 -0.81 -11.31 16 13 C 0.05 1.00 9.14 60.06 0.55 1.54 16 14 C 0.39 8.46 5.03 -318.68 -1.60 6.86 16 15 N -0.31 -7.15 12.10 30.34 0.37 -6.78 16 16 N -0.27 -5.53 12.20 32.59 0.40 -5.13 16 17 C 0.22 4.03 7.93 -153.79 -1.22 2.81 16 18 C 0.06 0.88 6.96 -83.01 -0.58 0.31 16 19 C -0.01 -0.17 12.13 29.85 0.36 0.20 16 20 O -0.20 -1.87 10.74 5.67 0.06 -1.81 16 21 C 0.18 1.46 13.20 52.02 0.69 2.15 16 22 N -0.48 -5.87 9.75 -11.45 -0.11 -5.98 16 23 N -0.46 -8.48 3.24 -122.02 -0.39 -8.88 16 24 C 0.09 1.30 10.72 59.85 0.64 1.94 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 27 H 0.00 0.02 7.22 -51.93 -0.38 -0.36 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.79 6.31 -51.93 -0.33 1.46 16 31 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.23 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.25 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.17 6.97 -51.93 -0.36 0.81 16 36 H 0.09 1.36 8.10 -51.93 -0.42 0.94 16 LS Contribution 310.15 15.07 4.67 4.67 Total: -1.00 -33.01 310.15 -5.78 -38.79 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.23 Total: -0.97 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.34 Total: 6.16 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.07 Total: -62.59 kcal Atomic # 8 Polarization: -1.87 SS G_CDS: 0.06 Total: -1.81 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.01 -5.78 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262900534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.037 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds