Wall clock time and date at job start Mon Mar 30 2020 01:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47604 * 2 1 4 4 C 1.50704 * 109.47518 * 119.99680 * 2 1 3 5 5 H 1.07997 * 120.00349 * 119.99569 * 4 2 1 6 6 C 1.37880 * 119.99637 * 300.00376 * 4 2 1 7 7 N 1.31512 * 120.00436 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99848 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47449 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47324 * 119.99708 * 8 6 4 11 11 H 1.48509 * 109.47343 * 240.00113 * 8 6 4 12 12 N 1.46904 * 109.47371 * 239.99502 * 2 1 3 13 13 C 1.46899 * 111.00115 * 183.95195 * 12 2 1 14 14 C 1.38536 * 110.99539 * 59.99883 * 12 2 1 15 15 N 1.31252 * 126.37488 * 58.97420 * 14 12 2 16 16 N 1.28504 * 110.10875 * 179.73731 * 15 14 12 17 17 C 1.31258 * 109.95158 * 359.97438 * 16 15 14 18 18 C 1.47881 * 126.47614 * 179.97438 * 17 16 15 19 19 C 1.35783 * 126.40290 * 359.69194 * 18 17 16 20 20 O 1.34649 * 106.94852 * 179.84281 * 19 18 17 21 21 C 1.33961 * 108.12967 * 0.42436 * 20 19 18 22 22 N 1.30088 * 109.17638 * 359.73195 * 21 20 19 23 23 N 1.36606 * 126.37306 * 238.65433 * 14 12 2 24 24 C 1.46497 * 127.17686 * 0.24846 * 23 14 12 25 25 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47146 * 299.99863 * 1 2 3 27 27 H 1.08998 * 109.47394 * 60.00491 * 1 2 3 28 28 H 0.96996 * 120.00672 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47406 * 302.06187 * 13 12 2 30 30 H 1.09005 * 109.47137 * 62.05893 * 13 12 2 31 31 H 1.08995 * 109.47330 * 182.06174 * 13 12 2 32 32 H 1.07997 * 126.52303 * 359.97438 * 19 18 17 33 33 H 1.07997 * 125.41064 * 179.75318 * 21 20 19 34 34 H 1.08999 * 109.47021 * 95.46755 * 24 23 14 35 35 H 1.08999 * 109.46793 * 215.46205 * 24 23 14 36 36 H 1.08996 * 109.47451 * 335.46136 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1200 4.0080 9 1 3.1456 -2.2874 3.6040 10 1 3.1466 -0.1870 4.8165 11 1 1.1661 -1.5865 4.8162 12 7 2.0197 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5754 -0.0645 -2.3515 15 7 1.8037 1.1812 -2.6964 16 7 1.2500 1.4349 -3.8279 17 6 0.6343 0.3654 -4.2750 18 6 -0.1212 0.2507 -5.5412 19 6 -0.3130 1.2346 -6.4570 20 8 -1.0488 0.7057 -7.4530 21 6 -1.3085 -0.5721 -7.1461 22 7 -0.7580 -0.8573 -6.0025 23 7 0.8234 -0.6280 -3.3429 24 6 0.3234 -2.0038 -3.4014 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.7088 1.1616 3.4843 29 1 3.9183 0.2035 -1.1222 30 1 3.8010 -1.3842 -0.3263 31 1 3.8234 -1.2787 -2.1030 32 1 0.0564 2.2478 -6.3988 33 1 -1.8833 -1.2568 -7.7521 34 1 -0.6968 -2.0361 -3.0191 35 1 0.3355 -2.3511 -4.4345 36 1 0.9596 -2.6477 -2.7942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262900534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:55 Heat of formation + Delta-G solvation = 101.468406 kcal Electronic energy + Delta-G solvation = -21560.393789 eV Core-core repulsion = 18275.927856 eV Total energy + Delta-G solvation = -3284.465934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.39511 -43.84125 -38.86051 -36.34295 -35.59237 -34.86716 -32.46496 -31.35038 -29.87800 -28.55588 -27.47643 -26.15748 -24.90791 -23.92126 -23.20064 -21.89930 -21.06907 -18.98642 -18.53861 -17.94031 -17.64696 -17.40329 -16.78970 -16.45291 -16.41247 -15.62039 -15.50435 -15.00445 -14.50727 -14.39823 -14.18166 -13.79667 -13.61657 -13.08278 -12.94800 -12.76997 -12.70559 -12.62394 -12.26889 -12.21452 -12.06613 -11.91278 -11.63383 -11.22901 -11.09844 -10.75035 -10.59638 -9.62066 -9.50834 -8.15095 -6.29545 -0.00789 0.81029 1.18566 1.38154 1.45787 1.47279 1.59506 1.83694 2.06010 2.41761 2.67082 3.01762 3.16958 3.51321 3.75972 3.94316 4.08860 4.32027 4.33119 4.48036 4.59683 4.60565 4.66558 4.68546 4.76410 4.81802 4.89222 4.97299 5.05011 5.19702 5.33376 5.47440 5.61553 5.79743 5.93003 6.11188 6.52832 6.55727 6.81027 7.39754 7.54736 8.92569 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.039094 B = 0.004127 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.050355 B = 6783.158580 C = 6811.002925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.235 3.765 3 H -0.024 1.024 4 C -0.522 4.522 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.971 3.029 9 H -0.259 1.259 10 H -0.283 1.283 11 H -0.281 1.281 12 N -0.467 5.467 13 C 0.053 3.947 14 C 0.371 3.629 15 N -0.349 5.349 16 N -0.300 5.300 17 C 0.244 3.756 18 C 0.017 3.983 19 C 0.011 3.989 20 O -0.195 6.195 21 C 0.211 3.789 22 N -0.512 5.512 23 N -0.457 5.457 24 C 0.089 3.911 25 H 0.040 0.960 26 H 0.069 0.931 27 H -0.004 1.004 28 H 0.264 0.736 29 H 0.019 0.981 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.246 0.754 33 H 0.307 0.693 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 -6.364 -19.468 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 H -0.007 1.007 4 C -0.560 4.560 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.796 3.204 9 H -0.182 1.182 10 H -0.209 1.209 11 H -0.207 1.207 12 N -0.193 5.193 13 C -0.094 4.094 14 C 0.014 3.986 15 N -0.194 5.194 16 N -0.144 5.144 17 C -0.022 4.022 18 C -0.101 4.101 19 C -0.064 4.064 20 O -0.080 6.080 21 C -0.018 4.018 22 N -0.241 5.241 23 N -0.149 5.149 24 C -0.053 4.053 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.015 0.985 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.262 0.738 33 H 0.322 0.678 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.086 -5.970 -18.953 20.287 hybrid contribution 0.027 0.068 0.906 0.909 sum -4.059 -5.902 -18.047 19.417 Atomic orbital electron populations 1.21570 0.97593 0.99210 0.98640 1.19128 0.92245 0.90902 0.84830 1.00660 1.21360 1.32001 1.12898 0.89728 0.90573 1.25795 0.95033 0.95579 1.02218 1.70053 1.37490 1.24198 1.24379 0.85305 0.78056 0.78587 0.78456 1.18248 1.20943 1.20685 1.59197 1.12695 1.49706 0.97746 1.22243 0.83540 1.00565 1.03041 1.22697 0.95925 0.88405 0.91558 1.74558 1.23032 1.13414 1.08401 1.74136 1.12221 1.22162 1.05839 1.21585 1.02620 0.85831 0.92126 1.18371 1.05143 0.92857 0.93762 1.25382 0.95060 1.00555 0.85444 1.84570 1.54532 1.27041 1.41883 1.29232 0.97702 0.82306 0.92523 1.70597 1.13397 1.27678 1.12411 1.46426 1.39134 1.13683 1.15622 1.22210 1.00692 0.76670 1.05707 0.94059 0.91275 0.98538 0.92721 0.96203 0.88744 0.91067 0.73761 0.67790 0.90277 0.86996 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.87 8.84 71.98 0.64 -5.23 16 2 C 0.23 12.47 1.99 44.17 0.09 12.56 16 3 H -0.02 -1.50 8.08 -2.39 -0.02 -1.52 16 4 C -0.52 -28.04 7.95 25.60 0.20 -27.84 16 5 H 0.08 3.89 6.40 -2.91 -0.02 3.87 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.54 11.32 21.45 0.24 -53.30 16 8 Si 0.97 42.57 29.54 68.60 2.03 44.60 16 9 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.47 -21.07 4.62 -710.86 -3.29 -24.35 16 13 C 0.05 2.14 9.14 127.69 1.17 3.30 16 14 C 0.37 16.34 5.03 260.04 1.31 17.64 16 15 N -0.35 -16.65 12.10 -57.92 -0.70 -17.35 16 16 N -0.30 -12.62 12.20 -50.80 -0.62 -13.24 16 17 C 0.24 8.82 7.93 136.24 1.08 9.90 16 18 C 0.02 0.44 6.96 40.50 0.28 0.72 16 19 C 0.01 0.21 12.13 67.25 0.82 1.03 16 20 O -0.20 -2.87 10.74 -2.64 -0.03 -2.90 16 21 C 0.21 2.50 13.20 130.50 1.72 4.23 16 22 N -0.51 -11.04 9.75 -305.02 -2.97 -14.01 16 23 N -0.46 -16.94 3.24 -539.95 -1.75 -18.69 16 24 C 0.09 2.50 10.72 127.77 1.37 3.87 16 25 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 27 H 0.00 -0.23 7.22 -2.39 -0.02 -0.25 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 3.68 6.31 -2.38 -0.02 3.66 16 31 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 32 H 0.25 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.31 -0.30 8.06 -2.91 -0.02 -0.32 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.11 2.67 6.97 -2.39 -0.02 2.65 16 36 H 0.10 2.69 8.10 -2.39 -0.02 2.67 16 Total: -1.00 -74.53 310.15 3.14 -71.38 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.11 Total: 6.53 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 9.12 Total: 21.33 kcal Atomic # 7 Polarization: -131.86 SS G_CDS: -9.08 Total: -140.94 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: -0.03 Total: -2.90 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -74.53 3.14 -71.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262900534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.852 kcal (2) G-P(sol) polarization free energy of solvation -74.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds