Wall clock time and date at job start Mon Mar 30 2020 01:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47363 * 2 1 4 4 C 1.50710 * 109.46961 * 119.99927 * 2 1 3 5 5 H 1.08001 * 119.99724 * 120.00494 * 4 2 1 6 6 C 1.37874 * 119.99763 * 299.99877 * 4 2 1 7 7 N 1.31517 * 119.99486 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00265 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46956 * 89.99970 * 8 6 4 10 10 H 1.48500 * 109.46989 * 209.99884 * 8 6 4 11 11 H 1.48495 * 109.47272 * 329.99687 * 8 6 4 12 12 N 1.46899 * 109.47195 * 239.99695 * 2 1 3 13 13 C 1.46902 * 110.99742 * 85.00441 * 12 2 1 14 14 C 1.50697 * 109.46957 * 180.02562 * 13 12 2 15 15 N 1.31265 * 126.19828 * 269.99488 * 14 13 12 16 16 N 1.28814 * 110.03688 * 180.02562 * 15 14 13 17 17 C 1.31393 * 109.25985 * 0.02562 * 16 15 14 18 18 C 1.46888 * 134.26325 * 180.02562 * 17 16 15 19 19 O 1.21742 * 120.78858 * 359.97438 * 18 17 16 20 20 N 1.35156 * 118.42628 * 179.97438 * 18 17 16 21 21 C 1.46499 * 119.85383 * 179.97438 * 20 18 17 22 22 C 1.38157 * 120.28996 * 0.24990 * 20 18 17 23 23 C 1.32804 * 121.84175 * 359.49098 * 22 20 18 24 24 N 1.34474 * 126.20605 * 89.99978 * 14 13 12 25 25 H 1.09000 * 109.47170 * 299.99989 * 1 2 3 26 26 H 1.08992 * 109.47279 * 60.00254 * 1 2 3 27 27 H 1.09003 * 109.47363 * 180.02562 * 1 2 3 28 28 H 0.96998 * 119.99578 * 179.97438 * 7 6 4 29 29 H 1.00896 * 111.00094 * 321.04673 * 12 2 1 30 30 H 1.08999 * 109.47582 * 59.99786 * 13 12 2 31 31 H 1.09008 * 109.46633 * 299.99570 * 13 12 2 32 32 H 1.09002 * 109.47391 * 89.99586 * 21 20 18 33 33 H 1.09001 * 109.46813 * 329.99642 * 21 20 18 34 34 H 1.09004 * 109.47041 * 209.99769 * 21 20 18 35 35 H 1.08005 * 119.07564 * 179.72158 * 22 20 18 36 36 H 1.08006 * 119.45968 * 180.26787 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1380 -0.8590 3.5566 8 14 0.6247 1.2791 2.6541 9 1 -0.8029 0.8726 2.6998 10 1 0.9758 1.9951 3.9068 11 1 0.8470 2.1765 1.4921 12 7 2.0196 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3468 14 6 2.5874 -0.5219 -3.5559 15 7 3.8421 -0.6493 -3.9197 16 7 3.9198 -1.3465 -5.0001 17 6 2.7110 -1.6973 -5.3773 18 6 2.1732 -2.4764 -6.5005 19 8 2.9153 -2.9573 -7.3372 20 7 0.8350 -2.6468 -6.5829 21 6 0.2649 -3.4178 -7.6904 22 6 0.0019 -2.0922 -5.6305 23 6 0.4765 -1.3900 -4.6079 24 7 1.8342 -1.1759 -4.4577 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.9039 -0.5274 4.4375 29 1 1.4495 -1.4980 -1.4100 30 1 2.7589 1.0462 -2.1182 31 1 1.0870 0.6162 -2.5525 32 1 0.1984 -4.4679 -7.4058 33 1 0.9033 -3.3191 -8.5684 34 1 -0.7313 -3.0401 -7.9212 35 1 -1.0648 -2.2368 -5.7179 36 1 -0.2096 -0.9773 -3.8831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307885571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:51 Heat of formation + Delta-G solvation = 94.420939 kcal Electronic energy + Delta-G solvation = -21121.292597 eV Core-core repulsion = 17836.521062 eV Total energy + Delta-G solvation = -3284.771535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.73288 -40.62065 -37.73278 -36.70009 -35.13756 -33.04992 -31.61793 -30.65398 -29.53687 -27.97846 -25.63310 -24.97941 -24.36765 -23.74633 -21.30577 -20.44549 -19.19284 -18.70329 -17.26991 -17.16150 -16.77302 -15.98110 -15.69538 -15.36893 -14.76048 -14.61070 -14.20761 -13.86309 -13.64999 -13.48656 -12.91873 -12.83869 -12.65050 -12.46708 -12.18844 -11.83272 -11.71784 -11.19386 -11.09188 -10.91788 -10.72278 -10.58366 -10.24925 -9.71986 -9.43465 -9.29856 -8.64593 -8.48774 -7.72535 -6.10570 -4.09492 0.64818 1.04568 1.88580 2.06302 2.51517 3.00659 3.17959 3.27219 3.32947 3.53483 3.95432 4.26044 4.32798 4.34884 4.55855 4.72018 4.80851 4.91122 5.04724 5.13491 5.18025 5.28556 5.48973 5.67593 5.75485 5.85050 5.97643 6.10389 6.28599 6.29796 6.52299 6.70422 6.90777 7.24525 7.50737 7.69723 7.99214 8.41693 8.57908 9.01661 9.49833 11.02876 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.032753 B = 0.003973 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.680936 B = 7045.178233 C = 7443.893765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.185 3.815 3 H 0.041 0.959 4 C -0.502 4.502 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.295 1.295 11 H -0.269 1.269 12 N -0.660 5.660 13 C 0.138 3.862 14 C 0.225 3.775 15 N -0.258 5.258 16 N -0.207 5.207 17 C 0.093 3.907 18 C 0.598 3.402 19 O -0.485 6.485 20 N -0.537 5.537 21 C 0.075 3.925 22 C 0.085 3.915 23 C -0.020 4.020 24 N -0.392 5.392 25 H 0.049 0.951 26 H 0.026 0.974 27 H 0.055 0.945 28 H 0.264 0.736 29 H 0.332 0.668 30 H 0.112 0.888 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.186 0.814 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.928 -0.842 -20.517 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.077 3.923 3 H 0.058 0.942 4 C -0.540 4.540 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.535 5.535 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.223 1.223 11 H -0.194 1.194 12 N -0.291 5.291 13 C 0.007 3.993 14 C -0.040 4.040 15 N -0.101 5.101 16 N -0.053 5.053 17 C -0.168 4.168 18 C 0.385 3.615 19 O -0.355 6.355 20 N -0.259 5.259 21 C -0.065 4.065 22 C -0.035 4.035 23 C -0.139 4.139 24 N -0.079 5.079 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.149 0.851 30 H 0.130 0.870 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.203 0.797 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.262 -0.934 -20.679 22.678 hybrid contribution -3.114 0.745 0.201 3.208 sum -12.375 -0.189 -20.479 23.928 Atomic orbital electron populations 1.22894 1.01268 1.01053 0.99147 1.19704 0.88639 0.95405 0.88559 0.94157 1.20915 1.31568 1.14037 0.87492 0.89872 1.24936 0.95973 0.96575 0.95809 1.69878 1.45528 1.40223 0.97901 0.86902 0.80432 0.83884 0.77150 1.20786 1.22265 1.19393 1.60636 1.58550 1.08253 1.01708 1.20503 0.99459 0.94766 0.84602 1.25150 0.87363 0.97347 0.94153 1.74899 1.14424 1.14660 1.06105 1.74661 1.16254 1.08446 1.05922 1.24501 0.88607 1.07277 0.96442 1.16467 0.81497 0.79915 0.83578 1.90929 1.57056 1.47709 1.39776 1.45303 1.05601 1.49241 1.25761 1.22064 0.99801 0.95966 0.88706 1.21373 0.97374 0.96030 0.88718 1.21032 0.82330 1.07778 1.02717 1.43677 1.07388 1.36839 1.19997 0.93204 0.95531 0.92559 0.92549 0.85101 0.87031 0.93637 0.90637 0.88998 0.89352 0.79685 0.80059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.46 8.64 37.15 0.32 -3.13 16 2 C 0.19 3.98 2.17 -68.86 -0.15 3.83 16 3 H 0.04 0.89 6.86 -51.93 -0.36 0.54 16 4 C -0.50 -13.59 9.42 -34.44 -0.32 -13.91 16 5 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 6 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 7 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 8 Si 0.89 20.75 24.37 -169.99 -4.14 16.60 16 9 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 10 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -5.92 6.53 56.52 0.37 -5.55 16 12 N -0.66 -12.38 6.22 -109.22 -0.68 -13.06 16 13 C 0.14 2.10 6.01 -4.98 -0.03 2.07 16 14 C 0.22 3.57 7.63 -155.29 -1.18 2.38 16 15 N -0.26 -4.89 12.23 32.73 0.40 -4.49 16 16 N -0.21 -3.91 12.29 32.34 0.40 -3.51 16 17 C 0.09 1.48 8.12 -154.30 -1.25 0.22 16 18 C 0.60 8.09 7.66 -12.59 -0.10 8.00 16 19 O -0.48 -7.79 16.79 5.15 0.09 -7.71 16 20 N -0.54 -4.53 3.06 -124.90 -0.38 -4.92 16 21 C 0.08 0.35 10.42 59.85 0.62 0.98 16 22 C 0.09 0.50 10.24 -16.57 -0.17 0.33 16 23 C -0.02 -0.16 10.87 -16.51 -0.18 -0.34 16 24 N -0.39 -5.25 2.97 -58.39 -0.17 -5.43 16 25 H 0.05 1.01 3.27 -51.93 -0.17 0.84 16 26 H 0.03 0.39 7.45 -51.93 -0.39 0.01 16 27 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.33 5.77 8.46 -39.29 -0.33 5.44 16 30 H 0.11 1.73 8.06 -51.93 -0.42 1.31 16 31 H 0.05 0.56 7.44 -51.92 -0.39 0.17 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.53 7.45 -51.93 -0.39 0.14 16 34 H 0.09 0.11 8.03 -51.93 -0.42 -0.31 16 35 H 0.19 0.17 8.05 -52.48 -0.42 -0.25 16 36 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 304.79 15.07 4.59 4.59 Total: -1.00 -35.98 304.79 -5.81 -41.80 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.15 Total: -0.02 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.54 Total: 2.24 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.34 Total: -57.52 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.71 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.14 Total: 16.60 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.98 -5.81 -41.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307885571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.219 kcal (2) G-P(sol) polarization free energy of solvation -35.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds