Wall clock time and date at job start Mon Mar 30 2020 01:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47363 * 2 1 4 4 C 1.50710 * 109.46961 * 119.99927 * 2 1 3 5 5 H 1.08001 * 119.99724 * 120.00494 * 4 2 1 6 6 C 1.37874 * 119.99763 * 299.99877 * 4 2 1 7 7 N 1.31517 * 119.99486 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00265 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46956 * 89.99970 * 8 6 4 10 10 H 1.48500 * 109.46989 * 209.99884 * 8 6 4 11 11 H 1.48495 * 109.47272 * 329.99687 * 8 6 4 12 12 N 1.46899 * 109.47195 * 239.99695 * 2 1 3 13 13 C 1.46902 * 110.99742 * 85.00441 * 12 2 1 14 14 C 1.50697 * 109.46957 * 180.02562 * 13 12 2 15 15 N 1.31265 * 126.19828 * 269.99488 * 14 13 12 16 16 N 1.28814 * 110.03688 * 180.02562 * 15 14 13 17 17 C 1.31393 * 109.25985 * 0.02562 * 16 15 14 18 18 C 1.46888 * 134.26325 * 180.02562 * 17 16 15 19 19 O 1.21742 * 120.78858 * 359.97438 * 18 17 16 20 20 N 1.35156 * 118.42628 * 179.97438 * 18 17 16 21 21 C 1.46499 * 119.85383 * 179.97438 * 20 18 17 22 22 C 1.38157 * 120.28996 * 0.24990 * 20 18 17 23 23 C 1.32804 * 121.84175 * 359.49098 * 22 20 18 24 24 N 1.34474 * 126.20605 * 89.99978 * 14 13 12 25 25 H 1.09000 * 109.47170 * 299.99989 * 1 2 3 26 26 H 1.08992 * 109.47279 * 60.00254 * 1 2 3 27 27 H 1.09003 * 109.47363 * 180.02562 * 1 2 3 28 28 H 0.96998 * 119.99578 * 179.97438 * 7 6 4 29 29 H 1.00896 * 111.00094 * 321.04673 * 12 2 1 30 30 H 1.08999 * 109.47582 * 59.99786 * 13 12 2 31 31 H 1.09008 * 109.46633 * 299.99570 * 13 12 2 32 32 H 1.09002 * 109.47391 * 89.99586 * 21 20 18 33 33 H 1.09001 * 109.46813 * 329.99642 * 21 20 18 34 34 H 1.09004 * 109.47041 * 209.99769 * 21 20 18 35 35 H 1.08005 * 119.07564 * 179.72158 * 22 20 18 36 36 H 1.08006 * 119.45968 * 180.26787 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1380 -0.8590 3.5566 8 14 0.6247 1.2791 2.6541 9 1 -0.8029 0.8726 2.6998 10 1 0.9758 1.9951 3.9068 11 1 0.8470 2.1765 1.4921 12 7 2.0196 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3468 14 6 2.5874 -0.5219 -3.5559 15 7 3.8421 -0.6493 -3.9197 16 7 3.9198 -1.3465 -5.0001 17 6 2.7110 -1.6973 -5.3773 18 6 2.1732 -2.4764 -6.5005 19 8 2.9153 -2.9573 -7.3372 20 7 0.8350 -2.6468 -6.5829 21 6 0.2649 -3.4178 -7.6904 22 6 0.0019 -2.0922 -5.6305 23 6 0.4765 -1.3900 -4.6079 24 7 1.8342 -1.1759 -4.4577 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.9039 -0.5274 4.4375 29 1 1.4495 -1.4980 -1.4100 30 1 2.7589 1.0462 -2.1182 31 1 1.0870 0.6162 -2.5525 32 1 0.1984 -4.4679 -7.4058 33 1 0.9033 -3.3191 -8.5684 34 1 -0.7313 -3.0401 -7.9212 35 1 -1.0648 -2.2368 -5.7179 36 1 -0.2096 -0.9773 -3.8831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307885571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:51 Heat of formation + Delta-G solvation = 65.681725 kcal Electronic energy + Delta-G solvation = -21122.538822 eV Core-core repulsion = 17836.521062 eV Total energy + Delta-G solvation = -3286.017761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.82243 -41.52021 -38.67884 -38.19697 -36.07606 -34.78004 -33.15380 -31.42115 -30.90890 -28.77568 -27.15949 -26.56546 -25.20946 -24.73535 -22.36787 -22.15244 -20.13165 -19.67572 -18.82112 -18.17228 -17.89531 -17.04615 -16.87845 -16.61594 -16.19725 -15.59347 -15.40760 -14.96119 -14.67369 -14.44712 -14.38173 -13.98802 -13.68374 -13.48119 -13.28401 -13.24068 -13.00381 -12.81819 -12.46375 -11.99535 -11.94278 -11.86819 -11.78853 -11.45101 -11.20818 -10.77244 -10.68106 -9.22860 -9.13095 -8.22685 -6.27020 -0.31097 0.17155 1.06758 1.14606 1.34824 1.42455 1.43030 1.52724 2.01940 2.37384 2.68895 3.00054 3.11994 3.35766 3.53798 3.68990 3.87720 4.21812 4.24472 4.41908 4.47293 4.50773 4.56167 4.61656 4.65584 4.71513 4.77761 4.84765 5.03082 5.14511 5.44653 5.47157 5.68576 5.85027 5.94502 6.34616 6.58642 6.63848 6.81361 7.23631 7.37871 8.95284 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.032753 B = 0.003973 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.680936 B = 7045.178233 C = 7443.893765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.191 3.809 3 H 0.040 0.960 4 C -0.509 4.509 5 H 0.026 0.974 6 C 0.004 3.996 7 N -0.956 5.956 8 Si 0.959 3.041 9 H -0.261 1.261 10 H -0.307 1.307 11 H -0.239 1.239 12 N -0.683 5.683 13 C 0.148 3.852 14 C 0.215 3.785 15 N -0.302 5.302 16 N -0.262 5.262 17 C 0.083 3.917 18 C 0.588 3.412 19 O -0.525 6.525 20 N -0.523 5.523 21 C 0.067 3.933 22 C 0.117 3.883 23 C -0.060 4.060 24 N -0.374 5.374 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.264 0.736 29 H 0.339 0.661 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.253 0.747 36 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.946 0.368 -22.556 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.082 3.918 3 H 0.058 0.942 4 C -0.547 4.547 5 H 0.044 0.956 6 C -0.192 4.192 7 N -0.597 5.597 8 Si 0.785 3.215 9 H -0.187 1.187 10 H -0.235 1.235 11 H -0.163 1.163 12 N -0.316 5.316 13 C 0.017 3.983 14 C -0.052 4.052 15 N -0.146 5.146 16 N -0.109 5.109 17 C -0.180 4.180 18 C 0.375 3.625 19 O -0.399 6.399 20 N -0.243 5.243 21 C -0.072 4.072 22 C -0.002 4.002 23 C -0.176 4.176 24 N -0.060 5.060 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.157 0.843 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.269 0.731 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -14.347 0.267 -22.765 26.910 hybrid contribution -1.594 0.192 0.697 1.751 sum -15.941 0.458 -22.069 27.228 Atomic orbital electron populations 1.22715 0.98053 1.01954 1.00903 1.19444 0.90931 0.94318 0.87122 0.94197 1.21275 1.30392 1.12544 0.90519 0.95552 1.25921 0.97750 1.00407 0.95149 1.70080 1.48095 1.42863 0.98656 0.85725 0.78882 0.79423 0.77446 1.18719 1.23498 1.16264 1.60315 1.59384 1.09362 1.02491 1.20463 1.01545 0.93464 0.82793 1.25078 0.86996 0.98217 0.94878 1.74734 1.16956 1.15952 1.06936 1.74507 1.18715 1.10623 1.07024 1.24932 0.88536 1.07142 0.97437 1.16555 0.83362 0.79846 0.82722 1.90900 1.58544 1.49516 1.40933 1.45573 1.03879 1.48030 1.26784 1.22468 1.01473 0.96496 0.86773 1.22486 0.99488 0.92272 0.85947 1.21980 0.80225 1.10134 1.05301 1.43807 1.09064 1.34900 1.18204 0.94469 0.90432 0.92293 0.92688 0.84281 0.87890 0.89047 0.89483 0.90578 0.84381 0.73088 0.76432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.83 8.64 71.98 0.62 -5.20 16 2 C 0.19 7.85 2.17 44.17 0.10 7.95 16 3 H 0.04 1.66 6.86 -2.39 -0.02 1.64 16 4 C -0.51 -28.21 9.42 25.60 0.24 -27.97 16 5 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 6 C 0.00 0.22 5.45 84.65 0.46 0.69 16 7 N -0.96 -59.60 13.96 21.45 0.30 -59.30 16 8 Si 0.96 42.03 24.37 68.60 1.67 43.70 16 9 H -0.26 -10.58 6.87 99.48 0.68 -9.90 16 10 H -0.31 -13.89 7.11 99.48 0.71 -13.19 16 11 H -0.24 -9.26 6.53 99.48 0.65 -8.61 16 12 N -0.68 -24.80 6.22 -499.45 -3.11 -27.91 16 13 C 0.15 4.16 6.01 85.56 0.51 4.68 16 14 C 0.21 6.70 7.63 138.08 1.05 7.75 16 15 N -0.30 -11.98 12.23 -50.37 -0.62 -12.60 16 16 N -0.26 -10.49 12.29 -51.59 -0.63 -11.12 16 17 C 0.08 2.64 8.12 135.97 1.10 3.75 16 18 C 0.59 15.51 7.66 86.45 0.66 16.17 16 19 O -0.53 -17.32 16.79 -4.48 -0.08 -17.39 16 20 N -0.52 -6.86 3.06 -667.05 -2.04 -8.90 16 21 C 0.07 0.34 10.42 127.77 1.33 1.67 16 22 C 0.12 0.67 10.24 82.52 0.84 1.52 16 23 C -0.06 -0.71 10.87 82.50 0.90 0.18 16 24 N -0.37 -9.37 2.97 -338.65 -1.01 -10.38 16 25 H 0.04 1.33 3.27 -2.39 -0.01 1.32 16 26 H 0.08 1.78 7.45 -2.39 -0.02 1.76 16 27 H 0.06 1.89 8.13 -2.39 -0.02 1.87 16 28 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.34 11.24 8.46 -89.70 -0.76 10.48 16 30 H 0.10 3.07 8.06 -2.39 -0.02 3.05 16 31 H 0.09 1.74 7.44 -2.38 -0.02 1.72 16 32 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.08 0.71 7.45 -2.39 -0.02 0.69 16 34 H 0.14 -0.61 8.03 -2.38 -0.02 -0.63 16 35 H 0.25 -1.90 8.05 -2.91 -0.02 -1.92 16 36 H 0.22 0.91 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -89.54 304.79 2.60 -86.94 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 0.29 Total: 5.80 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 7.83 Total: 11.16 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -7.11 Total: -130.21 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.08 Total: -17.39 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.67 Total: 43.70 kcal Total: -89.54 2.60 -86.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307885571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.623 kcal (2) G-P(sol) polarization free energy of solvation -89.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds