Wall clock time and date at job start Mon Mar 30 2020 02:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00467 * 2 1 4 4 C 1.53003 * 109.46690 * 269.99824 * 3 2 1 5 5 N 1.46506 * 109.46617 * 179.97438 * 4 3 2 6 6 C 1.36944 * 119.99355 * 179.97438 * 5 4 3 7 7 H 1.07991 * 120.00427 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99546 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00038 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00080 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47183 * 90.00112 * 10 8 6 12 12 H 1.48505 * 109.47191 * 210.00292 * 10 8 6 13 13 H 1.48496 * 109.47223 * 329.99843 * 10 8 6 14 14 C 1.34781 * 119.99986 * 179.97438 * 2 1 3 15 15 O 1.21715 * 119.99711 * 184.53894 * 14 2 1 16 16 C 1.46590 * 119.99869 * 4.53454 * 14 2 1 17 17 C 1.41160 * 126.56614 * 323.16739 * 16 14 2 18 18 N 1.30519 * 108.27877 * 180.02562 * 17 16 14 19 19 N 1.39991 * 109.36680 * 359.97068 * 18 17 16 20 20 C 1.38457 * 143.84807 * 180.02562 * 19 18 17 21 21 C 1.33077 * 108.42221 * 179.97438 * 20 19 18 22 22 N 1.38063 * 108.13404 * 359.80131 * 21 20 19 23 23 H 0.96995 * 126.15778 * 180.02562 * 22 21 20 24 24 C 1.35009 * 108.27856 * 0.02562 * 19 18 17 25 25 H 1.08995 * 109.47480 * 264.83246 * 1 2 3 26 26 H 1.08998 * 109.46678 * 24.83519 * 1 2 3 27 27 H 1.09002 * 109.46816 * 144.82718 * 1 2 3 28 28 H 1.08999 * 109.46934 * 29.99350 * 3 2 1 29 29 H 1.08997 * 109.47602 * 149.99323 * 3 2 1 30 30 H 1.08999 * 109.47044 * 299.99457 * 4 3 2 31 31 H 1.09003 * 109.47357 * 59.99866 * 4 3 2 32 32 H 0.96991 * 120.00270 * 359.97438 * 5 4 3 33 33 H 0.97008 * 120.00286 * 179.97438 * 9 8 6 34 34 H 1.07998 * 125.85790 * 359.97438 * 17 16 14 35 35 H 1.08002 * 125.78675 * 359.94845 * 20 19 18 36 36 H 1.07999 * 125.93099 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7102 -1.4426 5 7 3.1847 2.9793 -1.4425 6 6 3.5275 3.5719 -2.6286 7 1 3.2578 3.1041 -3.5638 8 6 4.2207 4.7745 -2.6286 9 7 4.5497 5.3444 -3.7684 10 14 4.6865 5.5841 -1.0109 11 1 6.0230 5.0995 -0.5817 12 1 4.7280 7.0579 -1.1888 13 1 3.6789 5.2387 0.0238 14 6 2.1389 -1.1672 0.0005 15 8 3.3532 -1.1688 0.0839 16 6 1.4094 -2.4348 -0.0993 17 6 0.1597 -2.7341 0.4849 18 7 -0.1566 -3.9604 0.1693 19 7 0.8563 -4.5113 -0.6247 20 6 1.2474 -5.6517 -1.3056 21 6 2.4262 -5.4168 -1.8768 22 7 2.8011 -4.1234 -1.5725 23 1 3.6166 -3.6820 -1.8569 24 6 1.8182 -3.5788 -0.7913 25 1 -0.3634 -0.0926 1.0234 26 1 -0.3632 0.9326 -0.4316 27 1 -0.3633 -0.8401 -0.5920 28 1 1.6085 2.0284 0.5137 29 1 3.1500 1.1384 0.5139 30 1 3.0417 0.9505 -1.9563 31 1 1.5002 1.8406 -1.9564 32 1 3.4266 3.3996 -0.6026 33 1 5.0338 6.1851 -3.7685 34 1 -0.4326 -2.0637 1.0900 35 1 0.6906 -6.5753 -1.3629 36 1 2.9898 -6.1154 -2.4774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317658999.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:51 Heat of formation + Delta-G solvation = 130.748546 kcal Electronic energy + Delta-G solvation = -20881.243655 eV Core-core repulsion = 17598.047404 eV Total energy + Delta-G solvation = -3283.196252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.30543 -39.60966 -38.12085 -35.85635 -34.41766 -32.94585 -31.52329 -29.89465 -29.47156 -27.98086 -26.46834 -23.97716 -22.72761 -22.32858 -21.37384 -21.23728 -19.65722 -17.81805 -17.51868 -16.64093 -16.42733 -15.96680 -15.57420 -15.28232 -14.86566 -14.37187 -14.15115 -13.81671 -13.65205 -13.50755 -13.17109 -12.89356 -12.73907 -12.60962 -12.07112 -11.52810 -11.15629 -11.06895 -11.04949 -10.76935 -10.68103 -10.13593 -9.67336 -9.56733 -9.39418 -8.86241 -8.45726 -7.81236 -7.20832 -5.73750 -3.09563 1.35300 1.71262 1.78450 2.24454 2.56179 3.08404 3.40860 3.43691 3.44887 3.48870 4.10246 4.45407 4.62017 4.62695 4.87836 4.99389 5.14749 5.20157 5.35400 5.40345 5.45111 5.52014 5.63364 5.64689 5.75089 5.83945 6.04335 6.23583 6.57073 6.59047 6.71442 6.82591 6.89609 7.48829 7.60686 8.01996 8.43610 8.45274 9.23774 9.96032 10.15789 11.44662 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.030140 B = 0.003686 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.770276 B = 7595.054820 C = 8054.758634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.607 5.607 3 C 0.106 3.894 4 C 0.147 3.853 5 N -0.754 5.754 6 C -0.242 4.242 7 H 0.089 0.911 8 C 0.004 3.996 9 N -0.935 5.935 10 Si 0.886 3.114 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.276 1.276 14 C 0.599 3.401 15 O -0.552 6.552 16 C -0.328 4.328 17 C 0.121 3.879 18 N -0.304 5.304 19 N -0.307 5.307 20 C 0.000 4.000 21 C 0.030 3.970 22 N -0.576 5.576 23 H 0.444 0.556 24 C 0.315 3.685 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.028 0.972 31 H 0.026 0.974 32 H 0.361 0.639 33 H 0.259 0.741 34 H 0.202 0.798 35 H 0.192 0.808 36 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.588 -23.140 7.294 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.340 5.340 3 C -0.017 4.017 4 C 0.019 3.981 5 N -0.400 5.400 6 C -0.372 4.372 7 H 0.107 0.893 8 C -0.192 4.192 9 N -0.583 5.583 10 Si 0.716 3.284 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.389 3.611 15 O -0.430 6.430 16 C -0.348 4.348 17 C -0.061 4.061 18 N -0.126 5.126 19 N -0.077 5.077 20 C -0.126 4.126 21 C -0.097 4.097 22 N -0.188 5.188 23 H 0.286 0.714 24 C 0.080 3.920 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.194 0.806 33 H 0.069 0.931 34 H 0.219 0.781 35 H 0.209 0.791 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.892 -24.074 7.230 27.013 hybrid contribution 1.265 1.470 0.731 2.073 sum -8.627 -22.604 7.961 25.470 Atomic orbital electron populations 1.21997 0.79860 1.03765 1.01168 1.47499 1.06807 1.05784 1.73895 1.21701 0.97641 0.83468 0.98878 1.20894 0.95309 0.88439 0.93472 1.42570 1.68807 1.23178 1.05441 1.19035 1.29636 1.02863 0.85681 0.89308 1.24669 1.00496 0.97596 0.96441 1.69706 1.45020 1.19663 1.23944 0.86516 0.78620 0.78891 0.84334 1.20990 1.21715 1.20262 1.16978 0.86245 0.82293 0.75602 1.90794 1.13800 1.87428 1.50976 1.18383 1.01702 0.94695 1.20063 1.24153 0.93001 0.92789 0.96173 1.77458 1.08210 1.11197 1.15764 1.46989 1.14804 1.10231 1.35685 1.21568 0.97300 0.91853 1.01919 1.22293 0.96528 0.86547 1.04380 1.41590 1.20536 1.12142 1.44572 0.71382 1.19165 0.85792 0.91646 0.95433 0.92693 0.90538 0.90833 0.90539 0.89683 0.95355 0.95574 0.80638 0.93065 0.78148 0.79108 0.77812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 9.02 59.85 0.54 1.31 16 2 N -0.61 -8.86 2.87 -183.16 -0.53 -9.38 16 3 C 0.11 1.79 5.53 -4.04 -0.02 1.76 16 4 C 0.15 3.07 6.58 -4.04 -0.03 3.04 16 5 N -0.75 -18.82 5.41 -59.90 -0.32 -19.14 16 6 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 7 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 8 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 9 N -0.94 -29.98 13.97 55.49 0.78 -29.20 16 10 Si 0.89 22.59 27.74 -169.99 -4.71 17.87 16 11 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16 14 C 0.60 9.73 7.56 -12.89 -0.10 9.63 16 15 O -0.55 -10.95 16.63 5.18 0.09 -10.87 16 16 C -0.33 -4.51 5.40 -104.83 -0.57 -5.08 16 17 C 0.12 1.38 9.69 -17.00 -0.16 1.22 16 18 N -0.30 -3.82 12.61 30.84 0.39 -3.43 16 19 N -0.31 -3.60 4.67 -11.88 -0.06 -3.65 16 20 C 0.00 0.00 11.91 -16.35 -0.19 -0.20 16 21 C 0.03 0.17 11.92 -16.54 -0.20 -0.03 16 22 N -0.58 -5.30 6.24 -11.98 -0.07 -5.38 16 23 H 0.44 3.60 8.96 -40.82 -0.37 3.23 16 24 C 0.32 3.99 8.54 -154.53 -1.32 2.67 16 25 H 0.05 0.42 7.30 -51.93 -0.38 0.04 16 26 H 0.08 0.76 8.03 -51.93 -0.42 0.34 16 27 H 0.07 0.71 5.86 -51.93 -0.30 0.40 16 28 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 29 H 0.08 1.56 7.36 -51.93 -0.38 1.18 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.36 8.68 5.53 -40.82 -0.23 8.45 16 33 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 34 H 0.20 1.57 6.24 -52.49 -0.33 1.24 16 35 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.21 0.15 8.06 -52.49 -0.42 -0.27 16 LS Contribution 309.12 15.07 4.66 4.66 Total: -1.00 -39.41 309.12 -6.19 -45.60 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.10 Total: 5.86 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -2.30 Total: 7.06 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: 0.18 Total: -70.19 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -39.41 -6.19 -45.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317658999.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.351 kcal (2) G-P(sol) polarization free energy of solvation -39.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds