Wall clock time and date at job start Mon Mar 30 2020 02:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00467 * 2 1 4 4 C 1.53003 * 109.46690 * 269.99824 * 3 2 1 5 5 N 1.46506 * 109.46617 * 179.97438 * 4 3 2 6 6 C 1.36944 * 119.99355 * 179.97438 * 5 4 3 7 7 H 1.07991 * 120.00427 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99546 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00038 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00080 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47183 * 90.00112 * 10 8 6 12 12 H 1.48505 * 109.47191 * 210.00292 * 10 8 6 13 13 H 1.48496 * 109.47223 * 329.99843 * 10 8 6 14 14 C 1.34781 * 119.99986 * 179.97438 * 2 1 3 15 15 O 1.21715 * 119.99711 * 184.53894 * 14 2 1 16 16 C 1.46590 * 119.99869 * 4.53454 * 14 2 1 17 17 C 1.41160 * 126.56614 * 323.16739 * 16 14 2 18 18 N 1.30519 * 108.27877 * 180.02562 * 17 16 14 19 19 N 1.39991 * 109.36680 * 359.97068 * 18 17 16 20 20 C 1.38457 * 143.84807 * 180.02562 * 19 18 17 21 21 C 1.33077 * 108.42221 * 179.97438 * 20 19 18 22 22 N 1.38063 * 108.13404 * 359.80131 * 21 20 19 23 23 H 0.96995 * 126.15778 * 180.02562 * 22 21 20 24 24 C 1.35009 * 108.27856 * 0.02562 * 19 18 17 25 25 H 1.08995 * 109.47480 * 264.83246 * 1 2 3 26 26 H 1.08998 * 109.46678 * 24.83519 * 1 2 3 27 27 H 1.09002 * 109.46816 * 144.82718 * 1 2 3 28 28 H 1.08999 * 109.46934 * 29.99350 * 3 2 1 29 29 H 1.08997 * 109.47602 * 149.99323 * 3 2 1 30 30 H 1.08999 * 109.47044 * 299.99457 * 4 3 2 31 31 H 1.09003 * 109.47357 * 59.99866 * 4 3 2 32 32 H 0.96991 * 120.00270 * 359.97438 * 5 4 3 33 33 H 0.97008 * 120.00286 * 179.97438 * 9 8 6 34 34 H 1.07998 * 125.85790 * 359.97438 * 17 16 14 35 35 H 1.08002 * 125.78675 * 359.94845 * 20 19 18 36 36 H 1.07999 * 125.93099 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7102 -1.4426 5 7 3.1847 2.9793 -1.4425 6 6 3.5275 3.5719 -2.6286 7 1 3.2578 3.1041 -3.5638 8 6 4.2207 4.7745 -2.6286 9 7 4.5497 5.3444 -3.7684 10 14 4.6865 5.5841 -1.0109 11 1 6.0230 5.0995 -0.5817 12 1 4.7280 7.0579 -1.1888 13 1 3.6789 5.2387 0.0238 14 6 2.1389 -1.1672 0.0005 15 8 3.3532 -1.1688 0.0839 16 6 1.4094 -2.4348 -0.0993 17 6 0.1597 -2.7341 0.4849 18 7 -0.1566 -3.9604 0.1693 19 7 0.8563 -4.5113 -0.6247 20 6 1.2474 -5.6517 -1.3056 21 6 2.4262 -5.4168 -1.8768 22 7 2.8011 -4.1234 -1.5725 23 1 3.6166 -3.6820 -1.8569 24 6 1.8182 -3.5788 -0.7913 25 1 -0.3634 -0.0926 1.0234 26 1 -0.3632 0.9326 -0.4316 27 1 -0.3633 -0.8401 -0.5920 28 1 1.6085 2.0284 0.5137 29 1 3.1500 1.1384 0.5139 30 1 3.0417 0.9505 -1.9563 31 1 1.5002 1.8406 -1.9564 32 1 3.4266 3.3996 -0.6026 33 1 5.0338 6.1851 -3.7685 34 1 -0.4326 -2.0637 1.0900 35 1 0.6906 -6.5753 -1.3629 36 1 2.9898 -6.1154 -2.4774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317658999.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:50 Heat of formation + Delta-G solvation = 100.587711 kcal Electronic energy + Delta-G solvation = -20882.551527 eV Core-core repulsion = 17598.047404 eV Total energy + Delta-G solvation = -3284.504123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.05997 -40.75362 -38.96074 -37.41866 -36.07943 -33.90032 -33.45907 -30.90857 -30.57814 -29.10889 -27.56761 -25.62925 -23.74453 -23.40977 -22.81962 -22.07374 -20.75772 -19.68460 -18.71398 -17.65745 -17.28452 -16.97519 -16.63187 -16.44116 -16.21315 -15.90321 -15.35683 -15.13545 -14.87272 -14.73906 -14.37335 -14.24279 -13.73498 -13.66176 -13.42977 -13.03746 -12.90361 -12.76438 -12.34390 -12.09895 -12.05303 -11.83591 -11.55659 -11.02510 -10.89310 -10.16018 -9.65593 -9.37495 -8.61901 -8.05991 -5.41827 0.67473 0.84410 1.05786 1.37964 1.43000 1.47240 1.49813 1.93542 1.96646 2.34852 2.47296 3.25087 3.31777 3.70578 3.79784 3.93330 4.14133 4.18340 4.22622 4.37695 4.40460 4.49290 4.55229 4.71680 4.76556 4.87494 4.97690 5.01123 5.08619 5.43410 5.58088 5.70944 5.83155 6.16904 6.19492 6.46895 6.69130 7.02533 7.25260 7.75907 7.98045 9.15341 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.030140 B = 0.003686 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.770276 B = 7595.054820 C = 8054.758634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.119 3.881 4 C 0.151 3.849 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.051 0.949 8 C -0.062 4.062 9 N -0.983 5.983 10 Si 0.959 3.041 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.244 1.244 14 C 0.595 3.405 15 O -0.601 6.601 16 C -0.359 4.359 17 C 0.133 3.867 18 N -0.327 5.327 19 N -0.312 5.312 20 C -0.025 4.025 21 C 0.053 3.947 22 N -0.576 5.576 23 H 0.447 0.553 24 C 0.286 3.714 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.001 0.999 31 H 0.032 0.968 32 H 0.369 0.631 33 H 0.260 0.740 34 H 0.231 0.769 35 H 0.224 0.776 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.713 -24.419 8.969 28.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.337 5.337 3 C -0.005 4.005 4 C 0.023 3.977 5 N -0.401 5.401 6 C -0.374 4.374 7 H 0.069 0.931 8 C -0.253 4.253 9 N -0.633 5.633 10 Si 0.785 3.215 11 H -0.207 1.207 12 H -0.217 1.217 13 H -0.168 1.168 14 C 0.387 3.613 15 O -0.484 6.484 16 C -0.379 4.379 17 C -0.049 4.049 18 N -0.149 5.149 19 N -0.082 5.082 20 C -0.148 4.148 21 C -0.073 4.073 22 N -0.189 5.189 23 H 0.289 0.711 24 C 0.049 3.951 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.019 0.981 31 H 0.050 0.950 32 H 0.203 0.797 33 H 0.069 0.931 34 H 0.247 0.753 35 H 0.240 0.760 36 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -11.086 -25.409 8.921 29.122 hybrid contribution 1.614 1.699 0.048 2.344 sum -9.472 -23.710 8.969 27.062 Atomic orbital electron populations 1.22298 0.76964 1.04405 1.03614 1.47565 1.08515 1.04472 1.73139 1.21428 0.98057 0.85290 0.95715 1.20948 0.94271 0.86043 0.96389 1.42506 1.69114 1.24239 1.04210 1.18980 1.29335 1.02974 0.86070 0.93068 1.25571 1.00686 0.98351 1.00711 1.69891 1.46207 1.20294 1.26863 0.85349 0.78915 0.77301 0.79894 1.20665 1.21658 1.16830 1.17399 0.85813 0.83431 0.74692 1.90749 1.15964 1.88189 1.53471 1.18309 1.02972 0.94219 1.22390 1.24558 0.92155 0.92705 0.95490 1.77351 1.09205 1.11744 1.16635 1.47273 1.14244 1.11109 1.35577 1.22437 0.98370 0.92058 1.01984 1.23264 0.95910 0.85290 1.02856 1.41875 1.19994 1.13342 1.43650 0.71117 1.19444 0.87140 0.92059 0.96502 0.89240 0.89913 0.90244 0.87575 0.91347 0.98112 0.95013 0.79735 0.93100 0.75262 0.75966 0.72764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 9.02 127.77 1.15 2.39 16 2 N -0.61 -17.10 2.87 -851.58 -2.45 -19.55 16 3 C 0.12 3.88 5.53 86.38 0.48 4.36 16 4 C 0.15 6.33 6.58 86.38 0.57 6.90 16 5 N -0.75 -37.43 5.41 -343.44 -1.86 -39.29 16 6 C -0.24 -14.58 10.47 84.03 0.88 -13.70 16 7 H 0.05 3.38 8.06 -2.92 -0.02 3.36 16 8 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 9 N -0.98 -64.37 13.97 21.65 0.30 -64.07 16 10 Si 0.96 46.23 27.74 68.60 1.90 48.14 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 13 H -0.24 -10.39 6.52 99.48 0.65 -9.74 16 14 C 0.60 19.49 7.56 86.42 0.65 20.14 16 15 O -0.60 -24.73 16.63 -4.40 -0.07 -24.81 16 16 C -0.36 -9.80 5.40 -20.00 -0.11 -9.91 16 17 C 0.13 2.86 9.69 85.61 0.83 3.69 16 18 N -0.33 -7.84 12.61 -56.33 -0.71 -8.55 16 19 N -0.31 -6.94 4.67 -191.50 -0.89 -7.83 16 20 C -0.02 -0.31 11.91 82.49 0.98 0.68 16 21 C 0.05 0.45 11.92 82.55 0.98 1.44 16 22 N -0.58 -10.07 6.24 -191.82 -1.20 -11.27 16 23 H 0.45 7.15 8.96 -92.71 -0.83 6.32 16 24 C 0.29 7.15 8.54 133.15 1.14 8.29 16 25 H 0.09 1.03 7.30 -2.39 -0.02 1.01 16 26 H 0.08 1.41 8.03 -2.39 -0.02 1.39 16 27 H 0.08 1.37 5.86 -2.39 -0.01 1.36 16 28 H 0.11 2.86 8.07 -2.39 -0.02 2.84 16 29 H 0.07 2.49 7.36 -2.39 -0.02 2.48 16 30 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.37 17.06 5.53 -92.72 -0.51 16.55 16 33 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 34 H 0.23 3.03 6.24 -2.91 -0.02 3.01 16 35 H 0.22 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.26 -0.79 8.06 -2.91 -0.02 -0.81 16 Total: -1.00 -89.47 309.12 2.78 -86.68 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.27 Total: 19.53 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 8.02 Total: 21.01 kcal Atomic # 7 Polarization: -143.76 SS G_CDS: -6.80 Total: -150.56 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.90 Total: 48.14 kcal Total: -89.47 2.78 -86.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317658999.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.268 kcal (2) G-P(sol) polarization free energy of solvation -89.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds