Wall clock time and date at job start Mon Mar 30 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.46819 * 2 1 4 4 N 1.28710 * 126.03858 * 268.72743 * 3 2 1 5 5 N 1.28511 * 110.64481 * 180.02562 * 4 3 2 6 6 C 1.33321 * 109.43668 * 0.02562 * 5 4 3 7 7 C 1.37009 * 106.37103 * 359.97438 * 6 5 4 8 8 C 1.47239 * 127.18763 * 180.26394 * 7 6 5 9 9 O 1.21617 * 119.99898 * 172.41093 * 8 7 6 10 10 N 1.34778 * 119.99865 * 352.40974 * 8 7 6 11 11 C 1.46499 * 119.99947 * 173.86813 * 10 8 7 12 12 C 1.50702 * 109.46942 * 89.99842 * 11 10 8 13 13 H 1.08009 * 119.99742 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00258 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99952 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00090 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47239 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46859 * 120.00099 * 16 14 12 19 19 H 1.48501 * 109.47039 * 240.00103 * 16 14 12 20 20 C 1.46504 * 120.00171 * 353.87448 * 10 8 7 21 21 C 1.52990 * 109.47179 * 89.49385 * 20 10 8 22 22 C 1.47207 * 109.47319 * 183.23076 * 21 20 10 23 23 N 7.71097 * 105.79363 * 17.50031 * 2 1 3 24 24 H 1.09008 * 109.47123 * 184.89462 * 1 2 3 25 25 H 1.09002 * 109.47399 * 304.88664 * 1 2 3 26 26 H 1.08998 * 109.47038 * 64.89169 * 1 2 3 27 27 H 1.09002 * 109.47256 * 240.00102 * 2 1 3 28 28 H 1.09000 * 109.47350 * 119.99913 * 2 1 3 29 29 H 1.07999 * 126.81446 * 180.02562 * 6 5 4 30 30 H 1.08990 * 109.47555 * 209.99805 * 11 10 8 31 31 H 1.09007 * 109.47269 * 330.00653 * 11 10 8 32 32 H 0.97003 * 120.00277 * 179.97438 * 15 14 12 33 33 H 1.08998 * 109.46928 * 209.49753 * 20 10 8 34 34 H 1.09003 * 109.46697 * 329.49407 * 20 10 8 35 35 H 1.09000 * 109.47656 * 303.22795 * 21 20 10 36 36 H 1.09001 * 109.47614 * 63.22734 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2924 2.0875 -1.0405 5 7 2.6987 3.2580 -0.6995 6 6 2.7031 3.3561 0.6301 7 6 2.2646 2.1492 1.1079 8 6 2.0890 1.7606 2.5172 9 8 1.5604 0.7010 2.7944 10 7 2.5141 2.5792 3.4999 11 6 2.2206 2.2581 4.8988 12 6 3.3336 1.4143 5.4647 13 1 4.1756 1.1445 4.8444 14 6 3.2775 0.9875 6.7745 15 7 2.2525 1.3164 7.5300 16 14 4.6575 -0.0579 7.4761 17 1 5.6864 -0.2864 6.4299 18 1 5.2733 0.6451 8.6301 19 1 4.1101 -1.3629 7.9261 20 6 3.2695 3.7901 3.1692 21 6 2.2996 4.9535 2.9542 22 6 3.0523 6.1510 2.5464 23 7 3.6287 7.0764 2.2312 24 1 -0.3634 -1.0240 0.0877 25 1 -0.3634 0.5878 0.8430 26 1 -0.3633 0.4361 -0.9305 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.9937 4.2165 1.2146 30 1 2.1360 3.1805 5.4733 31 1 1.2818 1.7070 4.9560 32 1 2.2129 1.0159 8.4514 33 1 3.9485 4.0295 3.9875 34 1 3.8436 3.6225 2.2579 35 1 1.5843 4.6911 2.1747 36 1 1.7663 5.1583 3.8826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324942109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:40 Heat of formation + Delta-G solvation = 112.685956 kcal Electronic energy + Delta-G solvation = -21646.002945 eV Core-core repulsion = 18362.023441 eV Total energy + Delta-G solvation = -3283.979504 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.28069 -39.35532 -37.25642 -35.88967 -34.98003 -33.21786 -31.52472 -30.95129 -30.66920 -27.54286 -24.91671 -24.31697 -23.71997 -22.86260 -21.37540 -19.27721 -17.89732 -17.34604 -16.86241 -16.62359 -16.35349 -15.53642 -15.42842 -14.56077 -14.50301 -14.25158 -13.73615 -13.59788 -13.27149 -13.04709 -12.63529 -12.42174 -12.33721 -12.25518 -11.94737 -11.74077 -11.57122 -11.40735 -11.12441 -11.00751 -10.94026 -10.74268 -10.30789 -10.13762 -9.85343 -9.52676 -9.30194 -8.58340 -8.10713 -6.20137 -4.25184 1.09498 2.17186 2.37578 2.67012 2.74413 3.21714 3.28466 3.30844 3.38317 3.45334 3.95099 4.31940 4.39719 4.56393 4.72183 4.81231 4.87733 4.95164 4.96169 5.13792 5.15900 5.29864 5.35233 5.48789 5.67391 5.78511 5.93551 5.97882 5.99479 6.46904 6.71109 7.10358 7.21659 7.49970 7.75156 7.92392 8.02004 8.38275 8.51720 8.79548 9.40932 10.88058 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.006533 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.667825 B = 4284.584230 C = 5742.669474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.107 3.893 3 N -0.254 5.254 4 N -0.070 5.070 5 N -0.276 5.276 6 C -0.040 4.040 7 C -0.052 4.052 8 C 0.581 3.419 9 O -0.522 6.522 10 N -0.574 5.574 11 C 0.247 3.753 12 C -0.531 4.531 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.094 3.906 21 C -0.064 4.064 22 C 0.209 3.791 23 N -0.429 5.429 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.121 0.879 29 H 0.210 0.790 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 0.833 -10.398 10.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.013 4.013 3 N -0.051 5.051 4 N -0.051 5.051 5 N -0.140 5.140 6 C -0.199 4.199 7 C -0.188 4.188 8 C 0.365 3.635 9 O -0.398 6.398 10 N -0.304 5.304 11 C 0.129 3.871 12 C -0.570 4.570 13 H 0.079 0.921 14 C -0.138 4.138 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.032 4.032 21 C -0.105 4.105 22 C -0.110 4.110 23 N -0.106 5.106 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.122 0.878 28 H 0.139 0.861 29 H 0.226 0.774 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.246 1.597 -12.043 12.354 hybrid contribution 0.458 -1.003 1.782 2.096 sum -1.787 0.594 -10.261 10.432 Atomic orbital electron populations 1.22072 0.92628 1.04152 1.03180 1.22349 0.96877 0.75698 1.06362 1.47868 1.40270 1.13547 1.03432 1.78181 1.15594 0.99364 1.11947 1.74890 1.16339 1.09945 1.12779 1.24915 1.04115 0.98837 0.92046 1.22417 1.10912 0.93630 0.91792 1.16703 0.80235 0.84639 0.81916 1.90801 1.44061 1.21803 1.83088 1.47953 1.52564 1.21137 1.08749 1.19507 0.98079 0.97168 0.72325 1.21412 1.06191 1.32906 0.96488 0.92122 1.24898 0.96087 0.96028 0.96805 1.69916 1.29529 1.45552 1.08077 0.86447 0.81896 0.80173 0.78957 1.19768 1.20880 1.20838 1.21943 0.93543 0.83594 1.04153 1.20098 0.97997 0.87144 1.05300 1.28883 0.94059 0.94545 0.93467 1.81188 1.09165 1.11239 1.09036 0.89620 0.90941 0.91948 0.87794 0.86080 0.77391 0.93928 0.93251 0.92575 0.87598 0.89168 0.86900 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.24 37.16 0.38 -1.28 16 2 C 0.11 1.24 6.50 -4.04 -0.03 1.21 16 3 N -0.25 -3.68 3.39 -57.37 -0.19 -3.88 16 4 N -0.07 -1.09 13.14 60.35 0.79 -0.29 16 5 N -0.28 -4.37 12.35 30.47 0.38 -3.99 16 6 C -0.04 -0.56 8.67 -17.35 -0.15 -0.71 16 7 C -0.05 -0.80 6.79 -82.33 -0.56 -1.36 16 8 C 0.58 10.29 7.63 -12.60 -0.10 10.19 16 9 O -0.52 -10.74 14.65 5.26 0.08 -10.66 16 10 N -0.57 -9.88 2.46 -176.40 -0.43 -10.31 16 11 C 0.25 5.39 5.11 -5.19 -0.03 5.37 16 12 C -0.53 -13.35 9.39 -34.44 -0.32 -13.67 16 13 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -24.18 13.29 55.43 0.74 -23.45 16 16 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.09 1.21 4.85 -4.04 -0.02 1.19 16 21 C -0.06 -0.65 5.05 -29.52 -0.15 -0.80 16 22 C 0.21 2.46 14.55 -20.79 -0.30 2.16 16 23 N -0.43 -6.19 18.53 42.11 0.78 -5.41 16 24 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.12 1.54 6.71 -51.93 -0.35 1.19 16 29 H 0.21 2.49 2.61 -52.49 -0.14 2.36 16 30 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.11 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.09 1.09 4.87 -51.93 -0.25 0.84 16 35 H 0.11 1.06 6.39 -51.93 -0.33 0.73 16 36 H 0.13 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -31.13 313.99 -3.48 -34.61 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.96 Total: -0.54 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -1.37 Total: 3.87 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 2.06 Total: -47.33 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.13 -3.48 -34.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324942109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.294 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds