Wall clock time and date at job start Mon Mar 30 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.46819 * 2 1 4 4 N 1.28710 * 126.03858 * 268.72743 * 3 2 1 5 5 N 1.28511 * 110.64481 * 180.02562 * 4 3 2 6 6 C 1.33321 * 109.43668 * 0.02562 * 5 4 3 7 7 C 1.37009 * 106.37103 * 359.97438 * 6 5 4 8 8 C 1.47239 * 127.18763 * 180.26394 * 7 6 5 9 9 O 1.21617 * 119.99898 * 172.41093 * 8 7 6 10 10 N 1.34778 * 119.99865 * 352.40974 * 8 7 6 11 11 C 1.46499 * 119.99947 * 173.86813 * 10 8 7 12 12 C 1.50702 * 109.46942 * 89.99842 * 11 10 8 13 13 H 1.08009 * 119.99742 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00258 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99952 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00090 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47239 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46859 * 120.00099 * 16 14 12 19 19 H 1.48501 * 109.47039 * 240.00103 * 16 14 12 20 20 C 1.46504 * 120.00171 * 353.87448 * 10 8 7 21 21 C 1.52990 * 109.47179 * 89.49385 * 20 10 8 22 22 C 1.47207 * 109.47319 * 183.23076 * 21 20 10 23 23 N 7.71097 * 105.79363 * 17.50031 * 2 1 3 24 24 H 1.09008 * 109.47123 * 184.89462 * 1 2 3 25 25 H 1.09002 * 109.47399 * 304.88664 * 1 2 3 26 26 H 1.08998 * 109.47038 * 64.89169 * 1 2 3 27 27 H 1.09002 * 109.47256 * 240.00102 * 2 1 3 28 28 H 1.09000 * 109.47350 * 119.99913 * 2 1 3 29 29 H 1.07999 * 126.81446 * 180.02562 * 6 5 4 30 30 H 1.08990 * 109.47555 * 209.99805 * 11 10 8 31 31 H 1.09007 * 109.47269 * 330.00653 * 11 10 8 32 32 H 0.97003 * 120.00277 * 179.97438 * 15 14 12 33 33 H 1.08998 * 109.46928 * 209.49753 * 20 10 8 34 34 H 1.09003 * 109.46697 * 329.49407 * 20 10 8 35 35 H 1.09000 * 109.47656 * 303.22795 * 21 20 10 36 36 H 1.09001 * 109.47614 * 63.22734 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2924 2.0875 -1.0405 5 7 2.6987 3.2580 -0.6995 6 6 2.7031 3.3561 0.6301 7 6 2.2646 2.1492 1.1079 8 6 2.0890 1.7606 2.5172 9 8 1.5604 0.7010 2.7944 10 7 2.5141 2.5792 3.4999 11 6 2.2206 2.2581 4.8988 12 6 3.3336 1.4143 5.4647 13 1 4.1756 1.1445 4.8444 14 6 3.2775 0.9875 6.7745 15 7 2.2525 1.3164 7.5300 16 14 4.6575 -0.0579 7.4761 17 1 5.6864 -0.2864 6.4299 18 1 5.2733 0.6451 8.6301 19 1 4.1101 -1.3629 7.9261 20 6 3.2695 3.7901 3.1692 21 6 2.2996 4.9535 2.9542 22 6 3.0523 6.1510 2.5464 23 7 3.6287 7.0764 2.2312 24 1 -0.3634 -1.0240 0.0877 25 1 -0.3634 0.5878 0.8430 26 1 -0.3633 0.4361 -0.9305 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.9937 4.2165 1.2146 30 1 2.1360 3.1805 5.4733 31 1 1.2818 1.7070 4.9560 32 1 2.2129 1.0159 8.4514 33 1 3.9485 4.0295 3.9875 34 1 3.8436 3.6225 2.2579 35 1 1.5843 4.6911 2.1747 36 1 1.7663 5.1583 3.8826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324942109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:40 Heat of formation + Delta-G solvation = 92.384228 kcal Electronic energy + Delta-G solvation = -21646.883294 eV Core-core repulsion = 18362.023441 eV Total energy + Delta-G solvation = -3284.859853 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.46617 -40.74318 -38.40569 -37.06810 -36.15757 -35.00621 -32.95671 -32.09075 -31.70956 -29.25498 -26.14486 -25.51270 -25.12948 -24.09376 -22.69544 -20.54383 -19.04621 -18.47986 -18.40758 -18.08463 -17.56542 -17.07858 -16.56393 -16.16013 -15.73011 -15.43701 -14.99038 -14.65227 -14.49767 -14.26661 -14.00990 -13.70057 -13.57418 -13.31617 -13.13968 -13.02336 -12.90652 -12.71690 -12.59121 -12.46921 -12.19436 -12.06719 -11.99476 -11.66157 -11.26962 -10.98988 -10.56627 -10.52090 -9.63204 -8.17105 -6.27830 -0.12531 1.05302 1.18017 1.42009 1.45613 1.54725 1.66211 1.78243 2.00621 2.16508 2.45036 2.88581 3.16260 3.30340 3.39411 3.65968 3.81571 3.88545 3.93213 3.95240 4.27465 4.33320 4.37914 4.65630 4.70691 4.77217 4.92494 4.98522 5.07298 5.14053 5.31523 5.38706 5.53217 5.81938 6.11428 6.46252 6.55229 6.79234 7.07955 7.24520 7.42533 8.89988 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.006533 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.667825 B = 4284.584230 C = 5742.669474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.099 3.901 3 N -0.248 5.248 4 N -0.072 5.072 5 N -0.296 5.296 6 C -0.021 4.021 7 C -0.065 4.065 8 C 0.582 3.418 9 O -0.557 6.557 10 N -0.573 5.573 11 C 0.262 3.738 12 C -0.539 4.539 13 H 0.053 0.947 14 C 0.018 3.982 15 N -0.922 5.922 16 Si 0.953 3.047 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.285 1.285 20 C 0.090 3.910 21 C -0.053 4.053 22 C 0.236 3.764 23 N -0.470 5.470 24 H 0.108 0.892 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.134 0.866 28 H 0.107 0.893 29 H 0.228 0.772 30 H 0.050 0.950 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 0.963 -11.254 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.020 4.020 3 N -0.046 5.046 4 N -0.052 5.052 5 N -0.158 5.158 6 C -0.180 4.180 7 C -0.200 4.200 8 C 0.368 3.632 9 O -0.436 6.436 10 N -0.303 5.303 11 C 0.142 3.858 12 C -0.578 4.578 13 H 0.072 0.928 14 C -0.182 4.182 15 N -0.562 5.562 16 Si 0.779 3.221 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.211 1.211 20 C -0.035 4.035 21 C -0.094 4.094 22 C -0.081 4.081 23 N -0.148 5.148 24 H 0.126 0.874 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.152 0.848 28 H 0.125 0.875 29 H 0.244 0.756 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.145 0.855 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.802 1.753 -12.930 13.172 hybrid contribution 0.304 -1.087 2.007 2.302 sum -1.498 0.666 -10.923 11.045 Atomic orbital electron populations 1.22042 0.91577 1.05206 1.02493 1.22636 0.97733 0.74497 1.07138 1.48154 1.39302 1.14226 1.02919 1.78153 1.15538 0.99468 1.12058 1.74898 1.17204 1.10298 1.13397 1.25158 1.02563 0.98736 0.91585 1.22063 1.12651 0.94446 0.90819 1.16910 0.79439 0.84042 0.82819 1.90782 1.45590 1.23378 1.83802 1.47753 1.52907 1.22490 1.07103 1.19032 0.95549 0.96466 0.74706 1.21721 1.06610 1.32940 0.96518 0.92835 1.25600 0.98005 0.97196 0.97398 1.70001 1.31024 1.46796 1.08371 0.85581 0.79520 0.78577 0.78405 1.19519 1.20087 1.21100 1.22130 0.93837 0.82720 1.04786 1.20043 0.97269 0.85327 1.06750 1.28896 0.93011 0.94060 0.92174 1.81232 1.10361 1.12586 1.10591 0.87394 0.93467 0.90967 0.84793 0.87487 0.75594 0.93247 0.96563 0.92510 0.87335 0.88046 0.85460 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.24 71.98 0.74 -2.25 16 2 C 0.10 2.16 6.50 86.38 0.56 2.72 16 3 N -0.25 -6.84 3.39 -335.42 -1.14 -7.98 16 4 N -0.07 -2.09 13.14 37.02 0.49 -1.60 16 5 N -0.30 -8.78 12.35 -57.50 -0.71 -9.49 16 6 C -0.02 -0.54 8.67 84.18 0.73 0.19 16 7 C -0.06 -1.91 6.79 40.41 0.27 -1.63 16 8 C 0.58 20.41 7.63 86.61 0.66 21.08 16 9 O -0.56 -23.29 14.65 -4.09 -0.06 -23.35 16 10 N -0.57 -19.33 2.46 -830.27 -2.04 -21.37 16 11 C 0.26 11.48 5.11 85.63 0.44 11.92 16 12 C -0.54 -27.08 9.39 25.60 0.24 -26.84 16 13 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 14 C 0.02 0.92 5.46 84.65 0.46 1.38 16 15 N -0.92 -50.21 13.29 21.45 0.28 -49.92 16 16 Si 0.95 41.51 29.54 68.60 2.03 43.54 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 C 0.09 2.15 4.85 86.38 0.42 2.57 16 21 C -0.05 -0.95 5.05 28.79 0.15 -0.81 16 22 C 0.24 5.05 14.55 89.46 1.30 6.36 16 23 N -0.47 -12.79 18.53 19.99 0.37 -12.42 16 24 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.11 2.69 6.71 -2.39 -0.02 2.68 16 29 H 0.23 4.85 2.61 -2.91 -0.01 4.85 16 30 H 0.05 2.10 8.07 -2.39 -0.02 2.08 16 31 H 0.02 0.82 7.51 -2.38 -0.02 0.81 16 32 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 33 H 0.11 2.61 8.07 -2.39 -0.02 2.59 16 34 H 0.10 2.23 4.87 -2.39 -0.01 2.22 16 35 H 0.13 2.04 6.39 -2.39 -0.02 2.03 16 36 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -66.62 313.99 6.32 -60.30 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.12 Total: 7.62 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 5.97 Total: 14.67 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -2.75 Total: -102.78 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.06 Total: -23.35 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -66.62 6.32 -60.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324942109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.689 kcal (2) G-P(sol) polarization free energy of solvation -66.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds