Wall clock time and date at job start Mon Mar 30 2020 02:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99982 * 2 1 4 4 C 1.50689 * 109.47596 * 275.49626 * 3 2 1 5 5 H 1.08007 * 120.00260 * 4.67390 * 4 3 2 6 6 C 1.37878 * 120.00076 * 184.67639 * 4 3 2 7 7 N 1.31507 * 120.00138 * 5.37744 * 6 4 3 8 8 Si 1.86809 * 119.99944 * 185.37617 * 6 4 3 9 9 H 1.48497 * 109.46886 * 5.01308 * 8 6 4 10 10 H 1.48500 * 109.46918 * 125.01071 * 8 6 4 11 11 H 1.48499 * 109.47200 * 245.01163 * 8 6 4 12 12 S 1.65605 * 119.99851 * 180.02562 * 2 1 3 13 13 O 1.42091 * 106.40294 * 150.28521 * 12 2 1 14 14 O 1.42103 * 106.40257 * 17.36009 * 12 2 1 15 15 N 1.65597 * 107.21472 * 263.82351 * 12 2 1 16 16 C 1.46499 * 120.00122 * 62.70083 * 15 12 2 17 17 C 1.53124 * 109.52260 * 143.19760 * 16 15 12 18 18 C 1.53032 * 109.27790 * 177.56336 * 17 16 15 19 19 N 1.46844 * 109.52518 * 300.81744 * 18 17 16 20 20 C 1.46847 * 111.19409 * 61.74445 * 19 18 17 21 21 C 1.53031 * 109.52553 * 298.25931 * 20 19 18 22 22 H 1.09001 * 109.46997 * 269.99838 * 1 2 3 23 23 H 1.08999 * 109.46704 * 29.99651 * 1 2 3 24 24 H 1.08999 * 109.47177 * 149.99165 * 1 2 3 25 25 H 1.08995 * 109.47111 * 35.50282 * 3 2 1 26 26 H 1.08999 * 109.46884 * 155.49078 * 3 2 1 27 27 H 0.97003 * 120.00118 * 180.02562 * 7 6 4 28 28 H 0.96997 * 120.00127 * 242.70412 * 15 12 2 29 29 H 1.09003 * 109.57785 * 23.04249 * 16 15 12 30 30 H 1.08998 * 109.50329 * 57.61773 * 17 16 15 31 31 H 1.09006 * 109.50331 * 297.50257 * 17 16 15 32 32 H 1.09005 * 109.46260 * 180.80134 * 18 17 16 33 33 H 1.08997 * 109.46474 * 60.83743 * 18 17 16 34 34 H 1.00898 * 111.00541 * 185.84254 * 19 18 17 35 35 H 1.08996 * 109.46152 * 58.27740 * 20 19 18 36 36 H 1.09001 * 109.45969 * 178.24312 * 20 19 18 37 37 H 1.09006 * 109.50416 * 299.24075 * 21 20 19 38 38 H 1.09001 * 109.50745 * 179.12449 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3309 1.7718 -1.4141 5 1 1.8478 1.2438 -2.2231 6 6 3.0697 2.9062 -1.6755 7 7 3.7444 3.4888 -0.7086 8 14 3.1125 3.6157 -3.4031 9 1 2.1819 2.8538 -4.2741 10 1 2.6980 5.0411 -3.3632 11 1 4.4914 3.5161 -3.9452 12 16 2.2931 -1.4342 -0.0006 13 8 3.5189 -1.1895 -0.6762 14 8 1.3669 -2.4321 -0.4078 15 7 2.6855 -1.7743 1.5718 16 6 1.6265 -1.9946 2.5599 17 6 2.0594 -3.0900 3.5383 18 6 0.9759 -3.2732 4.6034 19 7 0.7711 -2.0068 5.3180 20 6 0.3094 -0.9518 4.4069 21 6 1.3729 -0.6993 3.3359 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5140 25 1 1.6547 2.0016 0.5968 26 1 3.1890 1.1158 0.4263 27 1 4.2639 4.2871 -0.8924 28 1 3.6165 -1.8275 1.8387 29 1 0.7115 -2.3003 2.0525 30 1 2.9952 -2.8014 4.0169 31 1 2.2002 -4.0260 2.9976 32 1 1.2875 -4.0426 5.3099 33 1 0.0441 -3.5753 4.1253 34 1 0.1301 -2.1256 6.0880 35 1 -0.6193 -1.2647 3.9298 36 1 0.1369 -0.0350 4.9707 37 1 2.2980 -0.3730 3.8114 38 1 1.0233 0.0730 2.6506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329412921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:24 Heat of formation + Delta-G solvation = -80.160232 kcal Electronic energy + Delta-G solvation = -21027.152287 eV Core-core repulsion = 17837.961545 eV Total energy + Delta-G solvation = -3189.190742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.88256 -36.54765 -35.49329 -35.12677 -34.61141 -32.42688 -30.89823 -29.73790 -27.75484 -25.05933 -23.25261 -23.07796 -22.27118 -20.10467 -18.78379 -17.27206 -17.06521 -16.57151 -16.27092 -15.75315 -15.00365 -14.75573 -14.32641 -13.94369 -13.75222 -13.49442 -13.41248 -13.27778 -12.40138 -12.28466 -12.15469 -11.82543 -11.59330 -11.41882 -11.30469 -11.20731 -11.14066 -11.06932 -11.01513 -10.68387 -10.52348 -10.41807 -10.02582 -9.74633 -9.21829 -8.64455 -8.43088 -8.05161 -6.05691 -4.08598 1.28151 3.31657 3.39346 3.43767 3.52998 4.04512 4.16556 4.45851 4.65963 4.80443 4.90430 5.07688 5.12550 5.25315 5.29330 5.34887 5.45465 5.48973 5.67737 5.69901 5.83772 5.88847 5.94331 6.02673 6.24826 6.27958 6.47267 6.55385 6.84119 7.13172 7.18306 7.28532 7.43281 7.63224 7.92957 8.22001 8.93811 9.56271 11.03023 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028029 B = 0.005420 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.726477 B = 5164.563277 C = 5550.927602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.995 5.995 3 C 0.259 3.741 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.781 3.219 13 O -0.964 6.964 14 O -1.002 7.002 15 N -1.128 6.128 16 C 0.155 3.845 17 C -0.121 4.121 18 C 0.060 3.940 19 N -0.691 5.691 20 C 0.060 3.940 21 C -0.140 4.140 22 H 0.037 0.963 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.030 0.970 26 H 0.040 0.960 27 H 0.263 0.737 28 H 0.412 0.588 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.341 0.659 35 H 0.032 0.968 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.072 -10.414 12.023 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.838 5.838 3 C 0.137 3.863 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.789 3.211 13 O -0.948 6.948 14 O -0.985 6.985 15 N -0.885 5.885 16 C 0.047 3.953 17 C -0.161 4.161 18 C -0.071 4.071 19 N -0.323 5.323 20 C -0.070 4.070 21 C -0.179 4.179 22 H 0.056 0.944 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.245 0.755 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.159 0.841 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.280 -10.594 11.168 16.625 hybrid contribution -0.488 0.530 -0.590 0.931 sum -6.768 -10.063 10.578 16.092 Atomic orbital electron populations 1.21366 0.80350 1.03416 1.00101 1.57599 1.14093 1.23335 1.88797 1.19028 0.90978 0.78749 0.97552 1.21526 1.31666 1.10079 0.93481 0.92099 1.24930 0.94731 0.96937 0.97395 1.69931 1.30504 1.20744 1.32225 0.86473 0.78140 0.78552 0.84445 1.19679 1.21001 1.20811 1.01938 0.73333 0.72966 0.72860 1.93648 1.45105 1.85272 1.70735 1.93515 1.65305 1.58603 1.81113 1.56274 1.14925 1.88240 1.29085 1.20701 0.90106 0.95048 0.89467 1.21881 0.99580 0.98719 0.95899 1.21892 0.97644 0.91488 0.96028 1.60286 1.53083 1.06946 1.11971 1.21913 0.95898 0.95074 0.94129 1.22207 1.00304 0.97968 0.97431 0.94423 0.90425 0.91637 0.95154 0.94211 0.92763 0.75492 0.89946 0.90445 0.90887 0.90532 0.94953 0.84089 0.95016 0.90377 0.90304 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 10.58 59.85 0.63 2.22 16 2 N -1.00 -20.28 2.96 -123.06 -0.36 -20.65 16 3 C 0.26 6.38 5.09 -5.20 -0.03 6.35 16 4 C -0.53 -14.79 9.38 -34.45 -0.32 -15.11 16 5 H 0.06 1.72 7.82 -52.48 -0.41 1.31 16 6 C 0.06 1.77 5.45 -17.82 -0.10 1.67 16 7 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 S 2.78 55.31 6.01 -107.50 -0.65 54.67 16 13 O -0.96 -23.41 17.33 -57.17 -0.99 -24.40 16 14 O -1.00 -20.82 16.09 -57.17 -0.92 -21.74 16 15 N -1.13 -17.09 5.52 -4.79 -0.03 -17.12 16 16 C 0.15 2.00 2.89 -67.81 -0.20 1.80 16 17 C -0.12 -1.29 5.64 -26.65 -0.15 -1.44 16 18 C 0.06 0.54 6.55 -3.84 -0.03 0.51 16 19 N -0.69 -6.41 6.85 -113.83 -0.78 -7.19 16 20 C 0.06 0.60 6.55 -3.84 -0.03 0.58 16 21 C -0.14 -1.74 5.70 -26.66 -0.15 -1.89 16 22 H 0.04 0.52 7.17 -51.93 -0.37 0.15 16 23 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 24 H 0.06 1.06 7.00 -51.93 -0.36 0.70 16 25 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 26 H 0.04 1.05 7.75 -51.93 -0.40 0.65 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.41 5.61 8.86 -34.47 -0.31 5.30 16 29 H 0.08 1.10 7.58 -51.93 -0.39 0.71 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.34 2.46 8.90 -39.29 -0.35 2.11 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.11 6.83 -51.93 -0.35 0.76 16 LS Contribution 320.13 15.07 4.82 4.82 Total: -1.00 -33.68 320.13 -9.44 -43.12 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.89 Total: 2.36 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.36 Total: -5.31 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -0.43 Total: -70.37 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.91 Total: -46.14 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 55.31 SS G_CDS: -0.65 Total: 54.67 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.68 -9.44 -43.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329412921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.042 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds