Wall clock time and date at job start Mon Mar 30 2020 01:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46896 * 109.47033 * 2 1 4 4 C 1.46903 * 110.99889 * 305.43733 * 3 2 1 5 5 C 1.50695 * 109.47264 * 293.95606 * 4 3 2 6 6 H 1.07993 * 120.00317 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99933 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00090 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99862 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47360 * 60.00726 * 9 7 5 11 11 H 1.48504 * 109.47107 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47426 * 299.99967 * 9 7 5 13 13 C 1.46896 * 111.00352 * 69.39425 * 3 2 1 14 14 C 1.50698 * 109.46944 * 75.65222 * 13 3 2 15 15 N 1.31257 * 126.20527 * 84.25686 * 14 13 3 16 16 N 1.28812 * 110.04353 * 179.97438 * 15 14 13 17 17 C 1.31396 * 109.25721 * 359.97438 * 16 15 14 18 18 C 1.46883 * 134.26434 * 180.02562 * 17 16 15 19 19 O 1.21739 * 120.78638 * 359.97438 * 18 17 16 20 20 N 1.35158 * 118.42646 * 179.29275 * 18 17 16 21 21 H 0.97003 * 119.85628 * 180.22489 * 20 18 17 22 22 C 1.38155 * 120.28810 * 0.62127 * 20 18 17 23 23 C 1.32809 * 121.84677 * 359.55864 * 22 20 18 24 24 N 1.34478 * 126.19856 * 263.94052 * 14 13 3 25 25 H 1.09000 * 109.46727 * 66.19386 * 1 2 3 26 26 H 1.08996 * 109.46950 * 186.19560 * 1 2 3 27 27 H 1.08995 * 109.47168 * 306.19696 * 1 2 3 28 28 H 1.09001 * 109.46732 * 119.99778 * 2 1 3 29 29 H 1.08999 * 109.47222 * 239.99875 * 2 1 3 30 30 H 1.08999 * 109.46906 * 53.96378 * 4 3 2 31 31 H 1.09002 * 109.46885 * 173.95406 * 4 3 2 32 32 H 0.97000 * 119.99944 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47373 * 195.64713 * 13 3 2 34 34 H 1.08997 * 109.47179 * 315.64621 * 13 3 2 35 35 H 1.08006 * 119.07398 * 179.59014 * 22 20 18 36 36 H 1.08001 * 119.45537 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4454 2.1463 -1.1174 5 6 1.9539 1.5863 -2.4207 6 1 2.6351 0.7483 -2.4193 7 6 1.5485 2.1431 -3.6152 8 7 0.7185 3.1632 -3.6171 9 14 2.1782 1.4484 -5.2308 10 1 1.7788 0.0228 -5.3459 11 1 1.5978 2.2181 -6.3604 12 1 3.6591 1.5524 -5.2708 13 6 1.7402 2.0422 1.2836 14 6 2.7079 1.5424 2.3251 15 7 3.9208 1.9968 2.5380 16 7 4.4730 1.3459 3.5027 17 6 3.6325 0.4416 3.9524 18 6 3.6893 -0.5737 5.0123 19 8 4.6872 -0.7042 5.6973 20 7 2.6024 -1.3502 5.2183 21 1 2.6161 -2.0251 5.9150 22 6 1.4749 -1.1925 4.4356 23 6 1.4128 -0.2808 3.4719 24 7 2.4831 0.5540 3.2088 25 1 -0.3633 0.4148 -0.9402 26 1 -0.3633 -1.0216 0.1109 27 1 -0.3633 0.6069 0.8293 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 0.3585 2.0700 -1.0884 31 1 1.7385 3.1928 -1.0326 32 1 0.4337 3.5552 -4.4574 33 1 1.8520 3.1207 1.1716 34 1 0.7210 1.8131 1.5948 35 1 0.6198 -1.8280 4.6129 36 1 0.5116 -0.1906 2.8835 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330660802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:46 Heat of formation + Delta-G solvation = 84.058184 kcal Electronic energy + Delta-G solvation = -21523.062273 eV Core-core repulsion = 18237.841376 eV Total energy + Delta-G solvation = -3285.220898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.65763 -40.28869 -37.76090 -37.44323 -34.51562 -32.77197 -31.66444 -30.34790 -29.54209 -27.71857 -25.37683 -24.92633 -24.05449 -23.36441 -21.37142 -19.72654 -19.15010 -18.74637 -18.00589 -16.99157 -16.34590 -15.98581 -15.33486 -15.14886 -14.91473 -14.66501 -14.35023 -14.06441 -13.50104 -13.03747 -12.88695 -12.37331 -12.01235 -11.98730 -11.69318 -11.41259 -11.31160 -11.13110 -10.94199 -10.80815 -10.68072 -10.55168 -10.27457 -9.97073 -9.46176 -9.27435 -8.53629 -8.49181 -7.46726 -6.09227 -4.10422 0.72522 1.09355 2.13619 2.21248 2.62118 3.08110 3.30654 3.35409 3.39031 3.65025 4.05064 4.35133 4.41740 4.50168 4.73203 4.92107 5.09818 5.27207 5.36968 5.50296 5.64353 5.69451 5.75697 5.88233 5.89506 6.04903 6.10892 6.24220 6.51061 6.68846 6.76276 7.10694 7.20662 7.34732 7.66936 7.91089 8.01860 8.38252 8.51274 8.95653 9.53964 11.01420 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.031116 B = 0.004272 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.631862 B = 6552.090813 C = 6841.725160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 N -0.525 5.525 4 C 0.192 3.808 5 C -0.507 4.507 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.128 3.872 14 C 0.238 3.762 15 N -0.261 5.261 16 N -0.206 5.206 17 C 0.087 3.913 18 C 0.602 3.398 19 O -0.488 6.488 20 N -0.640 5.640 21 H 0.427 0.573 22 C 0.079 3.921 23 C -0.016 4.016 24 N -0.392 5.392 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.005 0.995 31 H 0.034 0.966 32 H 0.263 0.737 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.187 0.813 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 -10.012 15.951 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.070 4.070 3 N -0.250 5.250 4 C 0.068 3.932 5 C -0.546 4.546 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.201 1.201 13 C -0.003 4.003 14 C -0.027 4.027 15 N -0.104 5.104 16 N -0.052 5.052 17 C -0.175 4.175 18 C 0.388 3.612 19 O -0.358 6.358 20 N -0.284 5.284 21 H 0.267 0.733 22 C -0.042 4.042 23 C -0.135 4.135 24 N -0.080 5.080 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.023 0.977 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.204 0.796 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.571 -8.970 15.881 18.586 hybrid contribution -1.834 -1.378 -0.543 2.357 sum -5.404 -10.348 15.339 19.276 Atomic orbital electron populations 1.22409 0.98709 1.00686 1.02939 1.22037 0.92515 0.91119 1.01292 1.62260 1.59780 1.02200 1.00747 1.19873 0.93377 0.93426 0.86531 1.21031 1.27500 1.16378 0.89680 0.91973 1.24938 0.95131 0.95023 0.99222 1.69930 1.33473 1.23301 1.27003 0.86565 0.79350 0.78844 0.82705 1.20344 1.21342 1.20090 1.20594 0.91474 1.00672 0.87574 1.25275 0.96390 0.87928 0.93102 1.74898 1.03751 1.21591 1.10131 1.74651 1.22813 1.02553 1.05197 1.24443 0.86973 1.04794 1.01264 1.16491 0.83019 0.79753 0.81920 1.90972 1.30345 1.68028 1.46429 1.43350 1.12693 1.36859 1.35546 0.73317 1.21317 0.91443 0.99056 0.92342 1.21042 0.93482 0.95892 1.03074 1.43700 1.12802 1.25877 1.25616 0.90247 0.93199 0.93919 0.93909 0.89643 0.97697 0.94776 0.92784 0.87106 0.92740 0.79587 0.80238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 9.09 37.16 0.34 -2.42 16 2 C 0.06 1.00 5.71 -3.82 -0.02 0.98 16 3 N -0.53 -10.37 4.62 -237.52 -1.10 -11.46 16 4 C 0.19 4.54 4.35 -4.98 -0.02 4.52 16 5 C -0.51 -13.45 8.59 -34.44 -0.30 -13.75 16 6 H 0.06 1.66 7.10 -52.49 -0.37 1.29 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -25.39 13.29 55.43 0.74 -24.65 16 9 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.13 2.08 5.42 -4.98 -0.03 2.05 16 14 C 0.24 3.97 6.96 -155.29 -1.08 2.89 16 15 N -0.26 -5.12 12.23 32.73 0.40 -4.72 16 16 N -0.21 -3.97 12.29 32.34 0.40 -3.58 16 17 C 0.09 1.39 8.12 -154.29 -1.25 0.13 16 18 C 0.60 7.94 7.97 -12.59 -0.10 7.83 16 19 O -0.49 -7.87 17.98 5.15 0.09 -7.77 16 20 N -0.64 -4.72 5.38 -13.15 -0.07 -4.79 16 21 H 0.43 1.74 8.92 -40.82 -0.36 1.38 16 22 C 0.08 0.43 11.09 -16.56 -0.18 0.24 16 23 C -0.02 -0.14 9.81 -16.51 -0.16 -0.30 16 24 N -0.39 -5.40 2.76 -58.39 -0.16 -5.56 16 25 H 0.08 1.43 6.58 -51.93 -0.34 1.09 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.54 6.13 -51.93 -0.32 0.22 16 28 H 0.04 0.64 6.17 -51.93 -0.32 0.32 16 29 H 0.09 1.64 7.02 -51.93 -0.36 1.27 16 30 H 0.01 0.13 6.01 -51.93 -0.31 -0.18 16 31 H 0.03 0.88 7.83 -51.93 -0.41 0.47 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.11 1.84 7.74 -51.93 -0.40 1.44 16 34 H 0.05 0.74 6.02 -51.93 -0.31 0.42 16 35 H 0.19 0.04 8.06 -52.48 -0.42 -0.38 16 36 H 0.18 1.15 7.92 -52.49 -0.42 0.74 16 LS Contribution 303.91 15.07 4.58 4.58 Total: -1.00 -34.66 303.91 -6.96 -41.62 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -3.91 Total: -3.37 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -2.91 Total: 3.67 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.20 Total: -54.77 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.66 -6.96 -41.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330660802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.679 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds