Wall clock time and date at job start Mon Mar 30 2020 01:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46896 * 109.47033 * 2 1 4 4 C 1.46903 * 110.99889 * 305.43733 * 3 2 1 5 5 C 1.50695 * 109.47264 * 293.95606 * 4 3 2 6 6 H 1.07993 * 120.00317 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99933 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00090 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99862 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47360 * 60.00726 * 9 7 5 11 11 H 1.48504 * 109.47107 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47426 * 299.99967 * 9 7 5 13 13 C 1.46896 * 111.00352 * 69.39425 * 3 2 1 14 14 C 1.50698 * 109.46944 * 75.65222 * 13 3 2 15 15 N 1.31257 * 126.20527 * 84.25686 * 14 13 3 16 16 N 1.28812 * 110.04353 * 179.97438 * 15 14 13 17 17 C 1.31396 * 109.25721 * 359.97438 * 16 15 14 18 18 C 1.46883 * 134.26434 * 180.02562 * 17 16 15 19 19 O 1.21739 * 120.78638 * 359.97438 * 18 17 16 20 20 N 1.35158 * 118.42646 * 179.29275 * 18 17 16 21 21 H 0.97003 * 119.85628 * 180.22489 * 20 18 17 22 22 C 1.38155 * 120.28810 * 0.62127 * 20 18 17 23 23 C 1.32809 * 121.84677 * 359.55864 * 22 20 18 24 24 N 1.34478 * 126.19856 * 263.94052 * 14 13 3 25 25 H 1.09000 * 109.46727 * 66.19386 * 1 2 3 26 26 H 1.08996 * 109.46950 * 186.19560 * 1 2 3 27 27 H 1.08995 * 109.47168 * 306.19696 * 1 2 3 28 28 H 1.09001 * 109.46732 * 119.99778 * 2 1 3 29 29 H 1.08999 * 109.47222 * 239.99875 * 2 1 3 30 30 H 1.08999 * 109.46906 * 53.96378 * 4 3 2 31 31 H 1.09002 * 109.46885 * 173.95406 * 4 3 2 32 32 H 0.97000 * 119.99944 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47373 * 195.64713 * 13 3 2 34 34 H 1.08997 * 109.47179 * 315.64621 * 13 3 2 35 35 H 1.08006 * 119.07398 * 179.59014 * 22 20 18 36 36 H 1.08001 * 119.45537 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4454 2.1463 -1.1174 5 6 1.9539 1.5863 -2.4207 6 1 2.6351 0.7483 -2.4193 7 6 1.5485 2.1431 -3.6152 8 7 0.7185 3.1632 -3.6171 9 14 2.1782 1.4484 -5.2308 10 1 1.7788 0.0228 -5.3459 11 1 1.5978 2.2181 -6.3604 12 1 3.6591 1.5524 -5.2708 13 6 1.7402 2.0422 1.2836 14 6 2.7079 1.5424 2.3251 15 7 3.9208 1.9968 2.5380 16 7 4.4730 1.3459 3.5027 17 6 3.6325 0.4416 3.9524 18 6 3.6893 -0.5737 5.0123 19 8 4.6872 -0.7042 5.6973 20 7 2.6024 -1.3502 5.2183 21 1 2.6161 -2.0251 5.9150 22 6 1.4749 -1.1925 4.4356 23 6 1.4128 -0.2808 3.4719 24 7 2.4831 0.5540 3.2088 25 1 -0.3633 0.4148 -0.9402 26 1 -0.3633 -1.0216 0.1109 27 1 -0.3633 0.6069 0.8293 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 0.3585 2.0700 -1.0884 31 1 1.7385 3.1928 -1.0326 32 1 0.4337 3.5552 -4.4574 33 1 1.8520 3.1207 1.1716 34 1 0.7210 1.8131 1.5948 35 1 0.6198 -1.8280 4.6129 36 1 0.5116 -0.1906 2.8835 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330660802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:46 Heat of formation + Delta-G solvation = 57.320247 kcal Electronic energy + Delta-G solvation = -21524.221717 eV Core-core repulsion = 18237.841376 eV Total energy + Delta-G solvation = -3286.380341 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.79512 -41.25696 -39.10033 -38.55521 -35.54822 -34.73580 -32.95257 -31.25432 -30.85346 -29.37627 -26.79825 -26.08860 -25.07998 -24.95941 -22.64832 -21.08434 -20.10003 -19.76108 -18.87938 -18.34731 -18.10737 -17.07292 -16.77783 -16.56616 -16.13141 -16.02270 -15.59598 -15.03701 -14.68951 -14.28716 -14.04564 -13.82286 -13.46636 -13.24501 -13.05748 -12.92477 -12.73624 -12.53501 -12.49529 -12.41029 -12.02432 -11.89523 -11.78007 -11.57631 -11.33322 -10.68626 -10.55286 -9.29059 -9.00524 -8.16639 -6.24159 -0.26239 0.20193 1.11778 1.37403 1.42264 1.45239 1.47576 1.52738 2.06760 2.42860 2.77910 3.05554 3.16920 3.32791 3.46218 3.72323 4.01271 4.20819 4.23465 4.36207 4.47742 4.54780 4.60454 4.68587 4.89214 4.93583 5.04240 5.25526 5.30199 5.38518 5.46910 5.53961 5.68767 5.85001 6.07500 6.31855 6.51482 6.56781 6.89406 7.28631 7.44275 8.93404 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.031116 B = 0.004272 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.631862 B = 6552.090813 C = 6841.725160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 N -0.548 5.548 4 C 0.210 3.790 5 C -0.519 4.519 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.929 5.929 9 Si 0.957 3.043 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.278 1.278 13 C 0.137 3.863 14 C 0.225 3.775 15 N -0.304 5.304 16 N -0.261 5.261 17 C 0.080 3.920 18 C 0.599 3.401 19 O -0.526 6.526 20 N -0.612 5.612 21 H 0.449 0.551 22 C 0.127 3.873 23 C -0.067 4.067 24 N -0.373 5.373 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.000 1.000 31 H 0.002 0.998 32 H 0.264 0.736 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.258 0.742 36 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.275 -13.043 17.409 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.066 4.066 3 N -0.273 5.273 4 C 0.084 3.916 5 C -0.558 4.558 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.569 5.569 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.204 1.204 13 C 0.007 3.993 14 C -0.041 4.041 15 N -0.148 5.148 16 N -0.107 5.107 17 C -0.183 4.183 18 C 0.385 3.615 19 O -0.399 6.399 20 N -0.256 5.256 21 H 0.293 0.707 22 C 0.006 3.994 23 C -0.184 4.184 24 N -0.059 5.059 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.273 0.727 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.012 -12.059 17.370 21.983 hybrid contribution -1.158 -0.574 -0.836 1.539 sum -7.170 -12.633 16.534 22.008 Atomic orbital electron populations 1.22271 0.96400 1.03092 1.01771 1.22009 0.94388 0.89191 1.01023 1.61996 1.60654 1.03383 1.01230 1.19452 0.92849 0.91993 0.87274 1.21337 1.27075 1.16051 0.91292 0.92819 1.25696 0.95357 0.95333 1.02434 1.70033 1.34657 1.24456 1.27759 0.85616 0.78416 0.78722 0.78935 1.19134 1.20831 1.20362 1.20488 0.93159 0.99696 0.85978 1.24985 0.95767 0.89294 0.94096 1.74737 1.05606 1.23247 1.11200 1.74501 1.24814 1.04788 1.06601 1.24913 0.87141 1.04537 1.01719 1.16456 0.84067 0.79902 0.81089 1.90956 1.32245 1.69166 1.47582 1.43315 1.11468 1.35362 1.35493 0.70707 1.22442 0.91296 0.96963 0.88658 1.21895 0.93356 0.97064 1.06064 1.43786 1.13331 1.25024 1.23740 0.94212 0.89670 0.91466 0.91462 0.92547 0.98201 0.97977 0.92735 0.88470 0.89181 0.72654 0.77436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.68 9.09 71.98 0.65 -4.03 16 2 C 0.06 2.02 5.71 86.31 0.49 2.51 16 3 N -0.55 -21.85 4.62 -905.38 -4.18 -26.04 16 4 C 0.21 10.24 4.35 85.55 0.37 10.61 16 5 C -0.52 -28.25 8.59 25.60 0.22 -28.03 16 6 H 0.05 2.95 7.10 -2.91 -0.02 2.93 16 7 C 0.01 0.57 5.46 84.66 0.46 1.03 16 8 N -0.93 -53.56 13.29 21.45 0.28 -53.28 16 9 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 13 C 0.14 4.44 5.42 85.56 0.46 4.91 16 14 C 0.23 7.51 6.96 138.08 0.96 8.47 16 15 N -0.30 -12.52 12.23 -50.37 -0.62 -13.14 16 16 N -0.26 -10.50 12.29 -51.59 -0.63 -11.14 16 17 C 0.08 2.53 8.12 135.96 1.10 3.63 16 18 C 0.60 14.69 7.97 86.45 0.69 15.38 16 19 O -0.53 -16.69 17.98 -4.47 -0.08 -16.77 16 20 N -0.61 -6.07 5.38 -313.50 -1.69 -7.76 16 21 H 0.45 1.20 8.92 -92.71 -0.83 0.37 16 22 C 0.13 0.51 11.09 82.52 0.92 1.43 16 23 C -0.07 -0.83 9.81 82.50 0.81 -0.02 16 24 N -0.37 -9.59 2.76 -338.65 -0.94 -10.53 16 25 H 0.04 1.39 6.58 -2.39 -0.02 1.37 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.43 6.13 -2.39 -0.01 1.41 16 28 H 0.07 1.86 6.17 -2.39 -0.01 1.84 16 29 H 0.06 2.15 7.02 -2.39 -0.02 2.14 16 30 H 0.00 0.02 6.01 -2.39 -0.01 0.00 16 31 H 0.00 0.12 7.83 -2.39 -0.02 0.10 16 32 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.10 3.37 7.74 -2.39 -0.02 3.35 16 34 H 0.09 2.22 6.02 -2.39 -0.01 2.21 16 35 H 0.26 -2.41 8.06 -2.91 -0.02 -2.43 16 36 H 0.21 1.36 7.92 -2.91 -0.02 1.33 16 Total: -1.00 -83.52 303.91 1.63 -81.89 By element: Atomic # 1 Polarization: -5.08 SS G_CDS: 0.31 Total: -4.77 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 7.14 Total: 15.89 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -7.77 Total: -121.88 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.08 Total: -16.77 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -83.52 1.63 -81.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330660802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.212 kcal (2) G-P(sol) polarization free energy of solvation -83.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds