Wall clock time and date at job start Mon Mar 30 2020 02:01:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.46899 * 111.00066 * 2 1
4 4 C 1.53006 * 109.46956 * 66.04419 * 3 2 1
5 5 C 1.50695 * 109.47289 * 179.97438 * 4 3 2
6 6 H 1.08002 * 120.00151 * 0.02562 * 5 4 3
7 7 C 1.37874 * 120.00489 * 180.02562 * 5 4 3
8 8 N 1.31520 * 119.99507 * 359.97438 * 7 5 4
9 9 Si 1.86796 * 120.00413 * 180.02562 * 7 5 4
10 10 H 1.48492 * 109.47057 * 0.02562 * 9 7 5
11 11 H 1.48506 * 109.47044 * 120.00135 * 9 7 5
12 12 H 1.48493 * 109.47291 * 239.99627 * 9 7 5
13 13 C 1.46905 * 111.00138 * 236.05008 * 2 1 3
14 14 C 1.50703 * 109.46682 * 293.95343 * 13 2 1
15 15 N 1.31253 * 126.20153 * 90.02798 * 14 13 2
16 16 N 1.28814 * 110.03967 * 179.97438 * 15 14 13
17 17 C 1.31387 * 109.25736 * 359.97438 * 16 15 14
18 18 C 1.46889 * 134.26558 * 180.02562 * 17 16 15
19 19 O 1.21744 * 120.78517 * 0.02562 * 18 17 16
20 20 N 1.35149 * 118.43196 * 179.97438 * 18 17 16
21 21 H 0.97004 * 119.85957 * 180.02562 * 20 18 17
22 22 C 1.38152 * 120.28959 * 0.02562 * 20 18 17
23 23 C 1.32818 * 121.84291 * 359.97438 * 22 20 18
24 24 N 1.34482 * 126.19809 * 269.97784 * 14 13 2
25 25 H 1.09002 * 109.46981 * 183.95106 * 1 2 3
26 26 H 1.08992 * 109.47196 * 303.95159 * 1 2 3
27 27 H 1.09004 * 109.47065 * 63.95512 * 1 2 3
28 28 H 1.08998 * 109.47331 * 186.04474 * 3 2 1
29 29 H 1.09000 * 109.47139 * 306.05033 * 3 2 1
30 30 H 1.08998 * 109.47026 * 300.00711 * 4 3 2
31 31 H 1.09000 * 109.46696 * 60.00342 * 4 3 2
32 32 H 0.96996 * 119.99944 * 179.97438 * 8 7 5
33 33 H 1.09000 * 109.47194 * 173.95496 * 13 2 1
34 34 H 1.09001 * 109.47226 * 53.94967 * 13 2 1
35 35 H 1.07996 * 119.08032 * 180.02562 * 22 20 18
36 36 H 1.07996 * 119.45429 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6314 2.0574 1.3183
5 6 2.1720 3.4641 1.3186
6 1 2.7200 3.8322 0.4639
7 6 1.9670 4.2812 2.4101
8 7 1.2992 3.8331 3.4507
9 14 2.6365 6.0251 2.4102
10 1 3.3434 6.2840 1.1302
11 1 1.5141 6.9862 2.5584
12 1 3.5834 6.1918 3.5418
13 6 1.9955 -0.7659 -1.1377
14 6 1.6370 -2.2204 -0.9729
15 7 0.5491 -2.8057 -1.4165
16 7 0.5609 -4.0550 -1.1029
17 6 1.6634 -4.3254 -0.4415
18 6 2.2258 -5.5415 0.1606
19 8 1.6292 -6.6009 0.0981
20 7 3.4216 -5.4569 0.7845
21 1 3.8123 -6.2473 1.1890
22 6 4.0901 -4.2496 0.8489
23 6 3.5921 -3.1432 0.3086
24 7 2.3741 -3.1540 -0.3456
25 1 -0.3633 -1.0252 0.0708
26 1 -0.3633 0.5739 0.8524
27 1 -0.3633 0.4512 -0.9233
28 1 3.0797 1.3444 -0.1082
29 1 1.5611 1.9274 -0.8309
30 1 0.5472 2.0843 1.4265
31 1 2.0658 1.5015 2.1492
32 1 1.1553 4.4078 4.2187
33 1 3.0798 -0.6610 -1.1757
34 1 1.5611 -0.3872 -2.0629
35 1 5.0446 -4.2043 1.3520
36 1 4.1473 -2.2198 0.3821
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001331836275.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:01:47
Heat of formation + Delta-G solvation = 77.317325 kcal
Electronic energy + Delta-G solvation = -20909.419923 eV
Core-core repulsion = 17623.906720 eV
Total energy + Delta-G solvation = -3285.513203 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 277.128 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-43.81079 -40.37996 -37.71987 -37.39958 -34.64537 -33.28962 -31.73231 -30.37869
-29.56198 -27.46581 -25.73920 -25.08055 -24.22670 -22.97932 -21.11125 -20.06426
-19.25494 -18.96427 -18.09079 -17.15663 -16.50376 -15.98492 -15.37284 -15.24465
-14.82419 -14.54932 -14.41430 -14.35973 -13.73477 -12.98017 -12.93851 -12.67558
-12.23453 -11.98166 -11.82291 -11.54127 -11.24547 -11.14478 -11.01715 -10.96018
-10.77251 -10.60844 -9.99843 -9.70872 -9.46985 -9.19192 -8.59085 -8.40903
-8.01015 -6.06806 -4.09970 0.61558 1.03107 2.01975 2.14589 2.42366
2.96640 3.26259 3.34307 3.37266 3.56985 3.88437 4.24024 4.38733
4.44265 4.49768 4.66378 5.06740 5.15797 5.29424 5.42413 5.57266
5.67109 5.74081 5.91271 5.98525 6.16382 6.17788 6.30660 6.46727
6.63817 6.79353 7.25755 7.27786 7.29073 7.67094 7.77159 7.97493
8.28808 8.33351 8.97401 9.54386 11.04450
Molecular weight = 277.13amu
Principal moments of inertia in cm(-1)
A = 0.030472 B = 0.003540 C = 0.003361
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 918.658902 B = 7908.221557 C = 8327.737688
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 N -0.540 5.540
3 C 0.064 3.936
4 C 0.028 3.972
5 C -0.523 4.523
6 H 0.055 0.945
7 C 0.059 3.941
8 N -0.892 5.892
9 Si 0.892 3.108
10 H -0.273 1.273
11 H -0.284 1.284
12 H -0.284 1.284
13 C 0.130 3.870
14 C 0.229 3.771
15 N -0.275 5.275
16 N -0.207 5.207
17 C 0.094 3.906
18 C 0.601 3.399
19 O -0.487 6.487
20 N -0.639 5.639
21 H 0.428 0.572
22 C 0.081 3.919
23 C -0.012 4.012
24 N -0.380 5.380
25 H 0.059 0.941
26 H 0.082 0.918
27 H 0.028 0.972
28 H 0.063 0.937
29 H 0.028 0.972
30 H 0.019 0.981
31 H 0.024 0.976
32 H 0.261 0.739
33 H 0.096 0.904
34 H 0.075 0.925
35 H 0.190 0.810
36 H 0.187 0.813
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.134 -15.059 -5.768 18.533
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 N -0.265 5.265
3 C -0.062 4.062
4 C -0.009 4.009
5 C -0.562 4.562
6 H 0.074 0.926
7 C -0.143 4.143
8 N -0.531 5.531
9 Si 0.720 3.280
10 H -0.197 1.197
11 H -0.210 1.210
12 H -0.210 1.210
13 C 0.000 4.000
14 C -0.037 4.037
15 N -0.119 5.119
16 N -0.053 5.053
17 C -0.169 4.169
18 C 0.387 3.613
19 O -0.357 6.357
20 N -0.283 5.283
21 H 0.268 0.732
22 C -0.040 4.040
23 C -0.130 4.130
24 N -0.066 5.066
25 H 0.078 0.922
26 H 0.101 0.899
27 H 0.046 0.954
28 H 0.082 0.918
29 H 0.046 0.954
30 H 0.038 0.962
31 H 0.042 0.958
32 H 0.070 0.930
33 H 0.114 0.886
34 H 0.093 0.907
35 H 0.207 0.793
36 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges 7.427 -15.920 -5.975 18.555
hybrid contribution 1.468 1.359 0.275 2.020
sum 8.896 -14.560 -5.700 17.990
Atomic orbital electron populations
1.22455 0.86731 1.01736 1.01562 1.62175 1.08978 1.16506 1.38827
1.22415 0.98548 0.84088 1.01173 1.19110 0.97203 0.94082 0.90551
1.21190 1.35343 0.97685 1.02016 0.92643 1.24994 0.95221 0.98497
0.95557 1.69980 1.40624 1.36426 1.06045 0.86537 0.78762 0.84709
0.77985 1.19740 1.21002 1.20991 1.20569 1.01246 0.82636 0.95553
1.24942 0.89077 0.94651 0.94987 1.74849 1.16630 0.99350 1.21062
1.74600 1.13808 1.07326 1.09576 1.24490 0.94791 0.88209 1.09366
1.16470 0.80598 0.85999 0.78269 1.90981 1.58986 1.28499 1.57252
1.43360 1.19378 1.12241 1.53319 0.73186 1.21392 0.98940 0.83305
1.00344 1.21114 0.87418 1.01167 1.03343 1.43527 1.16327 1.09150
1.37636 0.92192 0.89946 0.95381 0.91822 0.95416 0.96229 0.95756
0.92975 0.88575 0.90741 0.79347 0.79613
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.40 9.17 60.07 0.55 0.95 16
2 N -0.54 -8.94 4.75 -244.36 -1.16 -10.10 16
3 C 0.06 1.20 4.90 -3.82 -0.02 1.18 16
4 C 0.03 0.68 4.90 -27.88 -0.14 0.54 16
5 C -0.52 -14.05 9.11 -34.44 -0.31 -14.36 16
6 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16
7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
8 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16
9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16
10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
13 C 0.13 1.71 5.49 -4.97 -0.03 1.69 16
14 C 0.23 3.28 6.73 -155.29 -1.05 2.24 16
15 N -0.27 -4.63 11.52 32.73 0.38 -4.25 16
16 N -0.21 -3.61 12.29 32.34 0.40 -3.21 16
17 C 0.09 1.38 8.12 -154.30 -1.25 0.12 16
18 C 0.60 7.47 7.97 -12.59 -0.10 7.37 16
19 O -0.49 -7.50 17.99 5.15 0.09 -7.41 16
20 N -0.64 -4.45 5.38 -13.15 -0.07 -4.52 16
21 H 0.43 1.62 8.92 -40.82 -0.36 1.26 16
22 C 0.08 0.41 11.09 -16.56 -0.18 0.23 16
23 C -0.01 -0.09 10.87 -16.52 -0.18 -0.27 16
24 N -0.38 -4.80 2.97 -58.39 -0.17 -4.97 16
25 H 0.06 1.03 6.74 -51.93 -0.35 0.68 16
26 H 0.08 1.55 6.30 -51.93 -0.33 1.23 16
27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16
28 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16
29 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16
30 H 0.02 0.51 6.47 -51.93 -0.34 0.18 16
31 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
33 H 0.10 1.00 7.93 -51.93 -0.41 0.59 16
34 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16
35 H 0.19 0.04 8.06 -52.49 -0.42 -0.39 16
36 H 0.19 1.07 8.06 -52.49 -0.42 0.65 16
LS Contribution 311.85 15.07 4.70 4.70
Total: -1.00 -35.37 311.85 -7.21 -42.57
By element:
Atomic # 1 Polarization: -0.30 SS G_CDS: -4.28 Total: -4.57 kcal
Atomic # 6 Polarization: 4.02 SS G_CDS: -2.81 Total: 1.22 kcal
Atomic # 7 Polarization: -52.43 SS G_CDS: 0.10 Total: -52.33 kcal
Atomic # 8 Polarization: -7.50 SS G_CDS: 0.09 Total: -7.41 kcal
Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal
Total LS contribution 4.70 Total: 4.70 kcal
Total: -35.37 -7.21 -42.57 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001331836275.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.892 kcal
(2) G-P(sol) polarization free energy of solvation -35.368 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.524 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.317 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds