Wall clock time and date at job start Mon Mar 30 2020 02:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00066 * 2 1 4 4 C 1.53006 * 109.46956 * 66.04419 * 3 2 1 5 5 C 1.50695 * 109.47289 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00151 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00489 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99507 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00413 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47057 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47044 * 120.00135 * 9 7 5 12 12 H 1.48493 * 109.47291 * 239.99627 * 9 7 5 13 13 C 1.46905 * 111.00138 * 236.05008 * 2 1 3 14 14 C 1.50703 * 109.46682 * 293.95343 * 13 2 1 15 15 N 1.31253 * 126.20153 * 90.02798 * 14 13 2 16 16 N 1.28814 * 110.03967 * 179.97438 * 15 14 13 17 17 C 1.31387 * 109.25736 * 359.97438 * 16 15 14 18 18 C 1.46889 * 134.26558 * 180.02562 * 17 16 15 19 19 O 1.21744 * 120.78517 * 0.02562 * 18 17 16 20 20 N 1.35149 * 118.43196 * 179.97438 * 18 17 16 21 21 H 0.97004 * 119.85957 * 180.02562 * 20 18 17 22 22 C 1.38152 * 120.28959 * 0.02562 * 20 18 17 23 23 C 1.32818 * 121.84291 * 359.97438 * 22 20 18 24 24 N 1.34482 * 126.19809 * 269.97784 * 14 13 2 25 25 H 1.09002 * 109.46981 * 183.95106 * 1 2 3 26 26 H 1.08992 * 109.47196 * 303.95159 * 1 2 3 27 27 H 1.09004 * 109.47065 * 63.95512 * 1 2 3 28 28 H 1.08998 * 109.47331 * 186.04474 * 3 2 1 29 29 H 1.09000 * 109.47139 * 306.05033 * 3 2 1 30 30 H 1.08998 * 109.47026 * 300.00711 * 4 3 2 31 31 H 1.09000 * 109.46696 * 60.00342 * 4 3 2 32 32 H 0.96996 * 119.99944 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47194 * 173.95496 * 13 2 1 34 34 H 1.09001 * 109.47226 * 53.94967 * 13 2 1 35 35 H 1.07996 * 119.08032 * 180.02562 * 22 20 18 36 36 H 1.07996 * 119.45429 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1720 3.4641 1.3186 6 1 2.7200 3.8322 0.4639 7 6 1.9670 4.2812 2.4101 8 7 1.2992 3.8331 3.4507 9 14 2.6365 6.0251 2.4102 10 1 3.3434 6.2840 1.1302 11 1 1.5141 6.9862 2.5584 12 1 3.5834 6.1918 3.5418 13 6 1.9955 -0.7659 -1.1377 14 6 1.6370 -2.2204 -0.9729 15 7 0.5491 -2.8057 -1.4165 16 7 0.5609 -4.0550 -1.1029 17 6 1.6634 -4.3254 -0.4415 18 6 2.2258 -5.5415 0.1606 19 8 1.6292 -6.6009 0.0981 20 7 3.4216 -5.4569 0.7845 21 1 3.8123 -6.2473 1.1890 22 6 4.0901 -4.2496 0.8489 23 6 3.5921 -3.1432 0.3086 24 7 2.3741 -3.1540 -0.3456 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3633 0.5739 0.8524 27 1 -0.3633 0.4512 -0.9233 28 1 3.0797 1.3444 -0.1082 29 1 1.5611 1.9274 -0.8309 30 1 0.5472 2.0843 1.4265 31 1 2.0658 1.5015 2.1492 32 1 1.1553 4.4078 4.2187 33 1 3.0798 -0.6610 -1.1757 34 1 1.5611 -0.3872 -2.0629 35 1 5.0446 -4.2043 1.3520 36 1 4.1473 -2.2198 0.3821 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331836275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:46 Heat of formation + Delta-G solvation = 50.673286 kcal Electronic energy + Delta-G solvation = -20910.575295 eV Core-core repulsion = 17623.906720 eV Total energy + Delta-G solvation = -3286.668575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.81850 -41.27256 -38.77968 -38.59208 -35.59160 -35.18220 -33.06640 -31.31244 -31.02650 -28.68716 -27.33276 -26.16544 -25.22945 -24.46244 -22.20128 -21.61037 -20.11997 -19.84428 -18.88320 -18.60104 -18.06952 -16.92555 -16.62373 -16.54401 -16.23585 -15.99114 -15.69475 -15.08566 -14.61943 -14.46505 -14.16990 -13.85822 -13.80669 -13.33066 -13.04880 -12.92883 -12.82228 -12.61283 -12.43516 -12.35371 -12.02337 -11.83782 -11.78244 -11.39808 -11.21140 -10.73360 -10.50358 -9.38196 -9.25501 -8.16010 -6.26502 -0.28993 0.20025 1.11779 1.36580 1.42209 1.44080 1.45702 1.57625 2.05918 2.43849 2.74010 2.96569 3.18539 3.19188 3.46125 3.64882 4.05232 4.18817 4.24676 4.41931 4.43758 4.55524 4.62012 4.69813 4.79411 4.93936 4.99835 5.13653 5.28426 5.47255 5.51002 5.65752 5.78440 5.84807 6.00876 6.11600 6.32105 6.50223 6.92300 7.20637 7.43077 8.96212 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.030472 B = 0.003540 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.658902 B = 7908.221557 C = 8327.737688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.546 5.546 3 C 0.082 3.918 4 C 0.033 3.967 5 C -0.537 4.537 6 H 0.066 0.934 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.963 3.037 10 H -0.258 1.258 11 H -0.285 1.285 12 H -0.279 1.279 13 C 0.137 3.863 14 C 0.217 3.783 15 N -0.305 5.305 16 N -0.258 5.258 17 C 0.080 3.920 18 C 0.596 3.404 19 O -0.528 6.528 20 N -0.613 5.613 21 H 0.448 0.552 22 C 0.119 3.881 23 C -0.057 4.057 24 N -0.367 5.367 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.030 0.970 30 H -0.011 1.011 31 H -0.004 1.004 32 H 0.262 0.738 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.253 0.747 36 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.607 -14.696 -5.897 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.271 5.271 3 C -0.045 4.045 4 C -0.004 4.004 5 C -0.576 4.576 6 H 0.085 0.915 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.788 3.212 10 H -0.181 1.181 11 H -0.211 1.211 12 H -0.205 1.205 13 C 0.008 3.992 14 C -0.050 4.050 15 N -0.149 5.149 16 N -0.104 5.104 17 C -0.183 4.183 18 C 0.382 3.618 19 O -0.401 6.401 20 N -0.258 5.258 21 H 0.292 0.708 22 C -0.001 4.001 23 C -0.173 4.173 24 N -0.052 5.052 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.105 0.895 29 H 0.049 0.951 30 H 0.008 0.992 31 H 0.014 0.986 32 H 0.070 0.930 33 H 0.150 0.850 34 H 0.100 0.900 35 H 0.269 0.731 36 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 10.963 -15.566 -6.098 19.992 hybrid contribution 0.485 1.151 0.390 1.309 sum 11.449 -14.414 -5.708 19.273 Atomic orbital electron populations 1.22281 0.87617 1.00940 1.00732 1.61994 1.08284 1.15568 1.41240 1.22058 0.99870 0.84804 0.97750 1.18954 0.94938 0.93779 0.92770 1.21665 1.34917 0.98784 1.02192 0.91539 1.25934 0.95530 1.03020 0.95238 1.70125 1.42253 1.38161 1.06890 0.85425 0.78017 0.79147 0.78594 1.18137 1.21099 1.20519 1.20658 1.03160 0.81223 0.94191 1.24984 0.89091 0.95187 0.95709 1.74701 1.18320 0.99585 1.22291 1.74468 1.16028 1.07948 1.11999 1.24868 0.94642 0.89733 1.09074 1.16500 0.81908 0.84749 0.78637 1.90957 1.60570 1.29464 1.59138 1.43334 1.17315 1.14071 1.51035 0.70839 1.22425 0.99547 0.81045 0.97096 1.21933 0.86505 1.03771 1.05135 1.43702 1.17144 1.07799 1.36522 0.92624 0.92601 0.94591 0.89466 0.95147 0.99239 0.98591 0.92973 0.84999 0.89971 0.73078 0.76960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.15 9.17 127.69 1.17 2.32 16 2 N -0.55 -17.58 4.75 -927.02 -4.41 -21.98 16 3 C 0.08 2.95 4.90 86.31 0.42 3.38 16 4 C 0.03 1.63 4.90 29.85 0.15 1.78 16 5 C -0.54 -28.56 9.11 25.60 0.23 -28.33 16 6 H 0.07 3.32 7.74 -2.91 -0.02 3.29 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16 9 Si 0.96 42.29 29.54 68.60 2.03 44.31 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 13 C 0.14 3.34 5.49 85.56 0.47 3.81 16 14 C 0.22 6.09 6.73 138.09 0.93 7.02 16 15 N -0.30 -10.57 11.52 -50.37 -0.58 -11.15 16 16 N -0.26 -9.39 12.29 -51.59 -0.63 -10.02 16 17 C 0.08 2.37 8.12 135.97 1.10 3.47 16 18 C 0.60 14.33 7.97 86.45 0.69 15.02 16 19 O -0.53 -16.45 17.99 -4.49 -0.08 -16.53 16 20 N -0.61 -6.46 5.38 -313.50 -1.69 -8.15 16 21 H 0.45 1.62 8.92 -92.71 -0.83 0.79 16 22 C 0.12 0.60 11.09 82.52 0.92 1.52 16 23 C -0.06 -0.70 10.87 82.50 0.90 0.19 16 24 N -0.37 -8.75 2.97 -338.66 -1.01 -9.76 16 25 H 0.05 1.99 6.74 -2.39 -0.02 1.97 16 26 H 0.06 2.22 6.30 -2.39 -0.02 2.21 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 2.76 7.93 -2.39 -0.02 2.74 16 29 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 30 H -0.01 -0.59 6.47 -2.39 -0.02 -0.60 16 31 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.13 2.24 7.93 -2.39 -0.02 2.22 16 34 H 0.08 1.91 8.12 -2.39 -0.02 1.90 16 35 H 0.25 -1.86 8.06 -2.91 -0.02 -1.89 16 36 H 0.21 1.43 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -82.41 311.85 1.65 -80.76 By element: Atomic # 1 Polarization: -3.35 SS G_CDS: 0.29 Total: -3.06 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 7.44 Total: 10.67 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -8.03 Total: -116.15 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.08 Total: -16.53 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -82.41 1.65 -80.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331836275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.431 kcal (2) G-P(sol) polarization free energy of solvation -82.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds