Wall clock time and date at job start Mon Mar 30 2020 02:01:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.46899 * 111.00066 * 2 1
4 4 C 1.53006 * 109.46956 * 66.04419 * 3 2 1
5 5 C 1.50695 * 109.47289 * 179.97438 * 4 3 2
6 6 H 1.08002 * 120.00151 * 0.02562 * 5 4 3
7 7 C 1.37874 * 120.00489 * 180.02562 * 5 4 3
8 8 N 1.31520 * 119.99507 * 359.97438 * 7 5 4
9 9 Si 1.86796 * 120.00413 * 180.02562 * 7 5 4
10 10 H 1.48492 * 109.47057 * 0.02562 * 9 7 5
11 11 H 1.48506 * 109.47044 * 120.00135 * 9 7 5
12 12 H 1.48493 * 109.47291 * 239.99627 * 9 7 5
13 13 C 1.46905 * 111.00138 * 236.05008 * 2 1 3
14 14 C 1.50703 * 109.46682 * 293.95343 * 13 2 1
15 15 N 1.31253 * 126.20153 * 90.02798 * 14 13 2
16 16 N 1.28814 * 110.03967 * 179.97438 * 15 14 13
17 17 C 1.31387 * 109.25736 * 359.97438 * 16 15 14
18 18 C 1.46889 * 134.26558 * 180.02562 * 17 16 15
19 19 O 1.21744 * 120.78517 * 0.02562 * 18 17 16
20 20 N 1.35149 * 118.43196 * 179.97438 * 18 17 16
21 21 H 0.97004 * 119.85957 * 180.02562 * 20 18 17
22 22 C 1.38152 * 120.28959 * 0.02562 * 20 18 17
23 23 C 1.32818 * 121.84291 * 359.97438 * 22 20 18
24 24 N 1.34482 * 126.19809 * 269.97784 * 14 13 2
25 25 H 1.09002 * 109.46981 * 183.95106 * 1 2 3
26 26 H 1.08992 * 109.47196 * 303.95159 * 1 2 3
27 27 H 1.09004 * 109.47065 * 63.95512 * 1 2 3
28 28 H 1.08998 * 109.47331 * 186.04474 * 3 2 1
29 29 H 1.09000 * 109.47139 * 306.05033 * 3 2 1
30 30 H 1.08998 * 109.47026 * 300.00711 * 4 3 2
31 31 H 1.09000 * 109.46696 * 60.00342 * 4 3 2
32 32 H 0.96996 * 119.99944 * 179.97438 * 8 7 5
33 33 H 1.09000 * 109.47194 * 173.95496 * 13 2 1
34 34 H 1.09001 * 109.47226 * 53.94967 * 13 2 1
35 35 H 1.07996 * 119.08032 * 180.02562 * 22 20 18
36 36 H 1.07996 * 119.45429 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6314 2.0574 1.3183
5 6 2.1720 3.4641 1.3186
6 1 2.7200 3.8322 0.4639
7 6 1.9670 4.2812 2.4101
8 7 1.2992 3.8331 3.4507
9 14 2.6365 6.0251 2.4102
10 1 3.3434 6.2840 1.1302
11 1 1.5141 6.9862 2.5584
12 1 3.5834 6.1918 3.5418
13 6 1.9955 -0.7659 -1.1377
14 6 1.6370 -2.2204 -0.9729
15 7 0.5491 -2.8057 -1.4165
16 7 0.5609 -4.0550 -1.1029
17 6 1.6634 -4.3254 -0.4415
18 6 2.2258 -5.5415 0.1606
19 8 1.6292 -6.6009 0.0981
20 7 3.4216 -5.4569 0.7845
21 1 3.8123 -6.2473 1.1890
22 6 4.0901 -4.2496 0.8489
23 6 3.5921 -3.1432 0.3086
24 7 2.3741 -3.1540 -0.3456
25 1 -0.3633 -1.0252 0.0708
26 1 -0.3633 0.5739 0.8524
27 1 -0.3633 0.4512 -0.9233
28 1 3.0797 1.3444 -0.1082
29 1 1.5611 1.9274 -0.8309
30 1 0.5472 2.0843 1.4265
31 1 2.0658 1.5015 2.1492
32 1 1.1553 4.4078 4.2187
33 1 3.0798 -0.6610 -1.1757
34 1 1.5611 -0.3872 -2.0629
35 1 5.0446 -4.2043 1.3520
36 1 4.1473 -2.2198 0.3821
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001331836275.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:01:46
Heat of formation + Delta-G solvation = 50.673286 kcal
Electronic energy + Delta-G solvation = -20910.575295 eV
Core-core repulsion = 17623.906720 eV
Total energy + Delta-G solvation = -3286.668575 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 277.128 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-44.81850 -41.27256 -38.77968 -38.59208 -35.59160 -35.18220 -33.06640 -31.31244
-31.02650 -28.68716 -27.33276 -26.16544 -25.22945 -24.46244 -22.20128 -21.61037
-20.11997 -19.84428 -18.88320 -18.60104 -18.06952 -16.92555 -16.62373 -16.54401
-16.23585 -15.99114 -15.69475 -15.08566 -14.61943 -14.46505 -14.16990 -13.85822
-13.80669 -13.33066 -13.04880 -12.92883 -12.82228 -12.61283 -12.43516 -12.35371
-12.02337 -11.83782 -11.78244 -11.39808 -11.21140 -10.73360 -10.50358 -9.38196
-9.25501 -8.16010 -6.26502 -0.28993 0.20025 1.11779 1.36580 1.42209
1.44080 1.45702 1.57625 2.05918 2.43849 2.74010 2.96569 3.18539
3.19188 3.46125 3.64882 4.05232 4.18817 4.24676 4.41931 4.43758
4.55524 4.62012 4.69813 4.79411 4.93936 4.99835 5.13653 5.28426
5.47255 5.51002 5.65752 5.78440 5.84807 6.00876 6.11600 6.32105
6.50223 6.92300 7.20637 7.43077 8.96212
Molecular weight = 277.13amu
Principal moments of inertia in cm(-1)
A = 0.030472 B = 0.003540 C = 0.003361
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 918.658902 B = 7908.221557 C = 8327.737688
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 N -0.546 5.546
3 C 0.082 3.918
4 C 0.033 3.967
5 C -0.537 4.537
6 H 0.066 0.934
7 C 0.001 3.999
8 N -0.934 5.934
9 Si 0.963 3.037
10 H -0.258 1.258
11 H -0.285 1.285
12 H -0.279 1.279
13 C 0.137 3.863
14 C 0.217 3.783
15 N -0.305 5.305
16 N -0.258 5.258
17 C 0.080 3.920
18 C 0.596 3.404
19 O -0.528 6.528
20 N -0.613 5.613
21 H 0.448 0.552
22 C 0.119 3.881
23 C -0.057 4.057
24 N -0.367 5.367
25 H 0.055 0.945
26 H 0.055 0.945
27 H 0.036 0.964
28 H 0.087 0.913
29 H 0.030 0.970
30 H -0.011 1.011
31 H -0.004 1.004
32 H 0.262 0.738
33 H 0.132 0.868
34 H 0.082 0.918
35 H 0.253 0.747
36 H 0.214 0.786
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.607 -14.696 -5.897 20.241
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 N -0.271 5.271
3 C -0.045 4.045
4 C -0.004 4.004
5 C -0.576 4.576
6 H 0.085 0.915
7 C -0.197 4.197
8 N -0.574 5.574
9 Si 0.788 3.212
10 H -0.181 1.181
11 H -0.211 1.211
12 H -0.205 1.205
13 C 0.008 3.992
14 C -0.050 4.050
15 N -0.149 5.149
16 N -0.104 5.104
17 C -0.183 4.183
18 C 0.382 3.618
19 O -0.401 6.401
20 N -0.258 5.258
21 H 0.292 0.708
22 C -0.001 4.001
23 C -0.173 4.173
24 N -0.052 5.052
25 H 0.074 0.926
26 H 0.074 0.926
27 H 0.054 0.946
28 H 0.105 0.895
29 H 0.049 0.951
30 H 0.008 0.992
31 H 0.014 0.986
32 H 0.070 0.930
33 H 0.150 0.850
34 H 0.100 0.900
35 H 0.269 0.731
36 H 0.230 0.770
Dipole moment (debyes) X Y Z Total
from point charges 10.963 -15.566 -6.098 19.992
hybrid contribution 0.485 1.151 0.390 1.309
sum 11.449 -14.414 -5.708 19.273
Atomic orbital electron populations
1.22281 0.87617 1.00940 1.00732 1.61994 1.08284 1.15568 1.41240
1.22058 0.99870 0.84804 0.97750 1.18954 0.94938 0.93779 0.92770
1.21665 1.34917 0.98784 1.02192 0.91539 1.25934 0.95530 1.03020
0.95238 1.70125 1.42253 1.38161 1.06890 0.85425 0.78017 0.79147
0.78594 1.18137 1.21099 1.20519 1.20658 1.03160 0.81223 0.94191
1.24984 0.89091 0.95187 0.95709 1.74701 1.18320 0.99585 1.22291
1.74468 1.16028 1.07948 1.11999 1.24868 0.94642 0.89733 1.09074
1.16500 0.81908 0.84749 0.78637 1.90957 1.60570 1.29464 1.59138
1.43334 1.17315 1.14071 1.51035 0.70839 1.22425 0.99547 0.81045
0.97096 1.21933 0.86505 1.03771 1.05135 1.43702 1.17144 1.07799
1.36522 0.92624 0.92601 0.94591 0.89466 0.95147 0.99239 0.98591
0.92973 0.84999 0.89971 0.73078 0.76960
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 1.15 9.17 127.69 1.17 2.32 16
2 N -0.55 -17.58 4.75 -927.02 -4.41 -21.98 16
3 C 0.08 2.95 4.90 86.31 0.42 3.38 16
4 C 0.03 1.63 4.90 29.85 0.15 1.78 16
5 C -0.54 -28.56 9.11 25.60 0.23 -28.33 16
6 H 0.07 3.32 7.74 -2.91 -0.02 3.29 16
7 C 0.00 0.03 5.46 84.65 0.46 0.49 16
8 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16
9 Si 0.96 42.29 29.54 68.60 2.03 44.31 16
10 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16
11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
12 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16
13 C 0.14 3.34 5.49 85.56 0.47 3.81 16
14 C 0.22 6.09 6.73 138.09 0.93 7.02 16
15 N -0.30 -10.57 11.52 -50.37 -0.58 -11.15 16
16 N -0.26 -9.39 12.29 -51.59 -0.63 -10.02 16
17 C 0.08 2.37 8.12 135.97 1.10 3.47 16
18 C 0.60 14.33 7.97 86.45 0.69 15.02 16
19 O -0.53 -16.45 17.99 -4.49 -0.08 -16.53 16
20 N -0.61 -6.46 5.38 -313.50 -1.69 -8.15 16
21 H 0.45 1.62 8.92 -92.71 -0.83 0.79 16
22 C 0.12 0.60 11.09 82.52 0.92 1.52 16
23 C -0.06 -0.70 10.87 82.50 0.90 0.19 16
24 N -0.37 -8.75 2.97 -338.66 -1.01 -9.76 16
25 H 0.05 1.99 6.74 -2.39 -0.02 1.97 16
26 H 0.06 2.22 6.30 -2.39 -0.02 2.21 16
27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16
28 H 0.09 2.76 7.93 -2.39 -0.02 2.74 16
29 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16
30 H -0.01 -0.59 6.47 -2.39 -0.02 -0.60 16
31 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16
32 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16
33 H 0.13 2.24 7.93 -2.39 -0.02 2.22 16
34 H 0.08 1.91 8.12 -2.39 -0.02 1.90 16
35 H 0.25 -1.86 8.06 -2.91 -0.02 -1.89 16
36 H 0.21 1.43 8.06 -2.91 -0.02 1.40 16
Total: -1.00 -82.41 311.85 1.65 -80.76
By element:
Atomic # 1 Polarization: -3.35 SS G_CDS: 0.29 Total: -3.06 kcal
Atomic # 6 Polarization: 3.23 SS G_CDS: 7.44 Total: 10.67 kcal
Atomic # 7 Polarization: -108.12 SS G_CDS: -8.03 Total: -116.15 kcal
Atomic # 8 Polarization: -16.45 SS G_CDS: -0.08 Total: -16.53 kcal
Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal
Total: -82.41 1.65 -80.76 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001331836275.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.431 kcal
(2) G-P(sol) polarization free energy of solvation -82.407 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.758 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.673 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds