Wall clock time and date at job start Mon Mar 30 2020 02:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99668 * 2 1 4 4 C 1.50707 * 109.46804 * 275.56331 * 3 2 1 5 5 H 1.07995 * 120.00313 * 4.72411 * 4 3 2 6 6 C 1.37874 * 119.99675 * 184.71589 * 4 3 2 7 7 N 1.31516 * 120.00196 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99846 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46859 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47009 * 120.00332 * 8 6 4 11 11 H 1.48505 * 109.46945 * 240.00238 * 8 6 4 12 12 S 1.65598 * 120.00099 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40121 * 159.56749 * 12 2 1 14 14 O 1.42100 * 106.40027 * 26.64533 * 12 2 1 15 15 N 1.65600 * 107.21644 * 273.10886 * 12 2 1 16 16 C 1.46496 * 120.00289 * 62.76869 * 15 12 2 17 17 C 1.53000 * 109.47233 * 164.44034 * 16 15 12 18 18 H 1.09002 * 112.84624 * 43.80400 * 17 16 15 19 19 C 1.53778 * 113.61745 * 175.00077 * 17 16 15 20 20 C 1.53778 * 87.08353 * 139.98221 * 19 17 16 21 21 H 1.08996 * 113.61819 * 89.11367 * 20 19 17 22 22 N 1.46900 * 113.61318 * 219.93779 * 20 19 17 23 23 C 1.53777 * 113.61302 * 272.50050 * 17 16 15 24 24 H 1.08998 * 109.47309 * 270.00490 * 1 2 3 25 25 H 1.09009 * 109.47416 * 30.00081 * 1 2 3 26 26 H 1.09001 * 109.47483 * 150.00315 * 1 2 3 27 27 H 1.08990 * 109.47625 * 35.56610 * 3 2 1 28 28 H 1.09000 * 109.46558 * 155.57212 * 3 2 1 29 29 H 0.97004 * 120.00160 * 179.97438 * 7 6 4 30 30 H 0.97009 * 119.99725 * 242.77060 * 15 12 2 31 31 H 1.08997 * 109.47042 * 44.43982 * 16 15 12 32 32 H 1.08997 * 109.47042 * 284.43864 * 16 15 12 33 33 H 1.09003 * 113.61257 * 25.43045 * 19 17 16 34 34 H 1.08997 * 113.69018 * 254.54098 * 19 17 16 35 35 H 1.00903 * 110.99723 * 178.46684 * 22 20 19 36 36 H 1.00900 * 111.00144 * 302.42304 * 22 20 19 37 37 H 1.09007 * 113.61623 * 105.47114 * 23 17 16 38 38 H 1.09000 * 113.61836 * 334.56582 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3292 1.7727 -1.4142 5 1 1.8446 1.2455 -2.2227 6 6 3.0684 2.9068 -1.6758 7 7 3.6588 3.5485 -0.6913 8 14 3.2312 3.5318 -3.4287 9 1 2.4776 2.6384 -4.3447 10 1 2.6808 4.9083 -3.5165 11 1 4.6642 3.5459 -3.8180 12 16 2.2930 -1.4341 0.0006 13 8 3.5998 -1.1431 -0.4754 14 8 1.4384 -2.3911 -0.6103 15 7 2.4638 -1.9008 1.5803 16 6 1.2785 -2.1948 2.3895 17 6 1.6965 -2.9586 3.6476 18 1 2.5860 -2.5416 4.1200 19 6 0.5392 -3.2109 4.6282 20 6 1.1382 -4.6094 4.8527 21 1 1.8755 -4.6451 5.6546 22 7 0.1291 -5.6718 4.9577 23 6 1.7582 -4.4825 3.4510 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6552 2.0014 0.5977 28 1 3.1894 1.1156 0.4250 29 1 4.1791 4.3462 -0.8755 30 1 3.3487 -1.9794 1.9699 31 1 0.5842 -2.8026 1.8094 32 1 0.7932 -1.2617 2.6755 33 1 -0.4411 -3.2271 4.1518 34 1 0.5690 -2.5760 5.5136 35 1 0.5650 -6.5737 5.0792 36 1 -0.5208 -5.4806 5.7054 37 1 2.7736 -4.8737 3.3858 38 1 1.1113 -4.8464 2.6528 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331982822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:28 Heat of formation + Delta-G solvation = -60.420062 kcal Electronic energy + Delta-G solvation = -20239.623343 eV Core-core repulsion = 17051.288599 eV Total energy + Delta-G solvation = -3188.334744 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.45861 -36.53672 -35.46161 -35.09086 -34.81296 -32.40986 -31.98598 -27.74350 -26.70318 -25.83033 -25.02507 -22.26929 -21.83887 -19.78443 -18.64385 -17.18670 -16.76184 -16.48679 -16.15265 -15.97743 -15.45957 -14.97858 -14.71841 -14.30258 -14.14446 -13.35637 -13.23866 -12.62267 -12.51283 -12.24750 -12.13935 -11.95790 -11.59059 -11.49376 -11.35305 -11.11302 -11.04934 -11.02408 -10.66473 -10.65055 -10.49238 -10.41080 -10.01075 -9.71992 -9.22421 -9.01076 -8.42747 -8.02501 -6.04536 -4.08470 1.30513 3.32496 3.40063 3.45307 3.58311 4.14717 4.22570 4.33582 4.46577 4.52128 4.61511 4.72582 5.03674 5.17834 5.26418 5.31298 5.51254 5.57044 5.64039 5.68946 5.74052 5.82332 6.00195 6.01681 6.14776 6.25698 6.36624 6.59639 6.89835 7.10316 7.15334 7.31002 7.45486 7.66764 7.93451 8.23112 8.94529 9.56887 11.04147 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039838 B = 0.004077 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.680681 B = 6866.097475 C = 6972.309963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.996 5.996 3 C 0.256 3.744 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.782 3.218 13 O -0.966 6.966 14 O -0.999 6.999 15 N -1.134 6.134 16 C 0.133 3.867 17 C -0.116 4.116 18 H 0.096 0.904 19 C -0.125 4.125 20 C 0.055 3.945 21 H 0.059 0.941 22 N -0.840 5.840 23 C -0.124 4.124 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.263 0.737 30 H 0.411 0.589 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.340 0.660 36 H 0.340 0.660 37 H 0.064 0.936 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.220 -13.431 13.301 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.839 5.839 3 C 0.134 3.866 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.790 3.210 13 O -0.950 6.950 14 O -0.982 6.982 15 N -0.893 5.893 16 C 0.006 3.994 17 C -0.136 4.136 18 H 0.114 0.886 19 C -0.163 4.163 20 C -0.056 4.056 21 H 0.077 0.923 22 N -0.369 5.369 23 C -0.162 4.162 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.244 0.756 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.202 -13.504 11.749 18.944 hybrid contribution 0.849 0.534 0.642 1.191 sum -5.353 -12.970 12.391 18.720 Atomic orbital electron populations 1.21375 0.80343 1.03503 1.00088 1.57594 1.14205 1.23320 1.88773 1.19063 0.91220 0.78687 0.97604 1.21553 1.31641 1.10229 0.93501 0.92081 1.24943 0.95048 0.96556 0.97508 1.69931 1.33287 1.18963 1.31263 0.86456 0.78046 0.78449 0.84576 1.19622 1.20971 1.20793 1.01906 0.73327 0.72898 0.72877 1.93637 1.38733 1.84604 1.77989 1.93520 1.69019 1.61104 1.74558 1.56216 1.13908 1.85785 1.33349 1.21180 0.87261 0.99221 0.91724 1.22601 0.99336 0.95884 0.95801 0.88561 1.23041 0.98966 0.95155 0.99170 1.22825 0.93786 0.91747 0.97291 0.92326 1.58859 1.19982 1.04829 1.53241 1.23135 1.00913 0.95137 0.96973 0.94371 0.90436 0.91607 0.95046 0.93973 0.92761 0.75615 0.90533 0.91844 0.88835 0.91395 0.84831 0.84731 0.91704 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.69 59.84 0.64 2.24 16 2 N -1.00 -20.81 3.23 -123.05 -0.40 -21.21 16 3 C 0.26 6.49 5.10 -5.19 -0.03 6.46 16 4 C -0.53 -15.06 9.38 -34.44 -0.32 -15.39 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 S 2.78 55.78 6.09 -107.50 -0.65 55.13 16 13 O -0.97 -23.46 16.99 -57.17 -0.97 -24.43 16 14 O -1.00 -21.19 16.34 -57.17 -0.93 -22.12 16 15 N -1.13 -16.73 6.05 -10.62 -0.06 -16.80 16 16 C 0.13 1.62 6.10 -4.04 -0.02 1.60 16 17 C -0.12 -1.12 3.79 -89.81 -0.34 -1.46 16 18 H 0.10 0.87 8.12 -51.93 -0.42 0.45 16 19 C -0.12 -1.04 7.44 -25.92 -0.19 -1.23 16 20 C 0.05 0.44 4.95 -66.90 -0.33 0.11 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 22 N -0.84 -6.22 9.58 -3.98 -0.04 -6.25 16 23 C -0.12 -1.20 7.43 -25.92 -0.19 -1.39 16 24 H 0.04 0.53 8.05 -51.93 -0.42 0.11 16 25 H 0.08 1.36 8.07 -51.92 -0.42 0.94 16 26 H 0.07 1.07 7.05 -51.93 -0.37 0.71 16 27 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 28 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.41 5.34 8.64 -34.47 -0.30 5.04 16 31 H 0.08 0.97 7.50 -51.93 -0.39 0.58 16 32 H 0.06 0.73 8.05 -51.93 -0.42 0.32 16 33 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.34 2.08 9.08 -39.29 -0.36 1.72 16 36 H 0.34 2.01 9.07 -39.29 -0.36 1.65 16 37 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.09 1.05 7.90 -51.93 -0.41 0.64 16 LS Contribution 328.55 15.07 4.95 4.95 Total: -1.00 -34.41 328.55 -9.18 -43.59 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.90 Total: 3.15 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.89 Total: -7.39 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: 0.24 Total: -69.91 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -1.91 Total: -46.55 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 55.78 SS G_CDS: -0.65 Total: 55.13 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.41 -9.18 -43.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331982822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.830 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds