Wall clock time and date at job start Mon Mar 30 2020 02:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99668 * 2 1 4 4 C 1.50707 * 109.46804 * 275.56331 * 3 2 1 5 5 H 1.07995 * 120.00313 * 4.72411 * 4 3 2 6 6 C 1.37874 * 119.99675 * 184.71589 * 4 3 2 7 7 N 1.31516 * 120.00196 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99846 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46859 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47009 * 120.00332 * 8 6 4 11 11 H 1.48505 * 109.46945 * 240.00238 * 8 6 4 12 12 S 1.65598 * 120.00099 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40121 * 159.56749 * 12 2 1 14 14 O 1.42100 * 106.40027 * 26.64533 * 12 2 1 15 15 N 1.65600 * 107.21644 * 273.10886 * 12 2 1 16 16 C 1.46496 * 120.00289 * 62.76869 * 15 12 2 17 17 C 1.53000 * 109.47233 * 164.44034 * 16 15 12 18 18 H 1.09002 * 112.84624 * 43.80400 * 17 16 15 19 19 C 1.53778 * 113.61745 * 175.00077 * 17 16 15 20 20 C 1.53778 * 87.08353 * 139.98221 * 19 17 16 21 21 H 1.08996 * 113.61819 * 89.11367 * 20 19 17 22 22 N 1.46900 * 113.61318 * 219.93779 * 20 19 17 23 23 C 1.53777 * 113.61302 * 272.50050 * 17 16 15 24 24 H 1.08998 * 109.47309 * 270.00490 * 1 2 3 25 25 H 1.09009 * 109.47416 * 30.00081 * 1 2 3 26 26 H 1.09001 * 109.47483 * 150.00315 * 1 2 3 27 27 H 1.08990 * 109.47625 * 35.56610 * 3 2 1 28 28 H 1.09000 * 109.46558 * 155.57212 * 3 2 1 29 29 H 0.97004 * 120.00160 * 179.97438 * 7 6 4 30 30 H 0.97009 * 119.99725 * 242.77060 * 15 12 2 31 31 H 1.08997 * 109.47042 * 44.43982 * 16 15 12 32 32 H 1.08997 * 109.47042 * 284.43864 * 16 15 12 33 33 H 1.09003 * 113.61257 * 25.43045 * 19 17 16 34 34 H 1.08997 * 113.69018 * 254.54098 * 19 17 16 35 35 H 1.00903 * 110.99723 * 178.46684 * 22 20 19 36 36 H 1.00900 * 111.00144 * 302.42304 * 22 20 19 37 37 H 1.09007 * 113.61623 * 105.47114 * 23 17 16 38 38 H 1.09000 * 113.61836 * 334.56582 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3292 1.7727 -1.4142 5 1 1.8446 1.2455 -2.2227 6 6 3.0684 2.9068 -1.6758 7 7 3.6588 3.5485 -0.6913 8 14 3.2312 3.5318 -3.4287 9 1 2.4776 2.6384 -4.3447 10 1 2.6808 4.9083 -3.5165 11 1 4.6642 3.5459 -3.8180 12 16 2.2930 -1.4341 0.0006 13 8 3.5998 -1.1431 -0.4754 14 8 1.4384 -2.3911 -0.6103 15 7 2.4638 -1.9008 1.5803 16 6 1.2785 -2.1948 2.3895 17 6 1.6965 -2.9586 3.6476 18 1 2.5860 -2.5416 4.1200 19 6 0.5392 -3.2109 4.6282 20 6 1.1382 -4.6094 4.8527 21 1 1.8755 -4.6451 5.6546 22 7 0.1291 -5.6718 4.9577 23 6 1.7582 -4.4825 3.4510 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6552 2.0014 0.5977 28 1 3.1894 1.1156 0.4250 29 1 4.1791 4.3462 -0.8755 30 1 3.3487 -1.9794 1.9699 31 1 0.5842 -2.8026 1.8094 32 1 0.7932 -1.2617 2.6755 33 1 -0.4411 -3.2271 4.1518 34 1 0.5690 -2.5760 5.5136 35 1 0.5650 -6.5737 5.0792 36 1 -0.5208 -5.4806 5.7054 37 1 2.7736 -4.8737 3.3858 38 1 1.1113 -4.8464 2.6528 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331982822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:28 Heat of formation + Delta-G solvation = -88.942790 kcal Electronic energy + Delta-G solvation = -20240.860182 eV Core-core repulsion = 17051.288599 eV Total energy + Delta-G solvation = -3189.571583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19287 -38.25250 -37.20850 -36.82871 -35.90501 -34.49872 -32.71294 -29.65546 -27.67980 -26.75963 -26.52436 -24.20238 -22.67779 -20.73214 -19.95412 -18.89575 -18.41123 -18.18804 -17.45461 -16.92734 -16.62802 -16.26830 -15.89051 -15.49623 -15.29870 -14.95288 -14.88492 -14.08718 -13.89990 -13.47907 -13.33000 -13.26550 -13.24802 -13.10165 -13.01226 -12.92605 -12.47195 -12.39623 -12.28678 -11.97340 -11.77026 -11.73519 -11.56717 -11.12600 -10.60545 -10.38173 -9.76940 -9.58485 -8.20635 -6.32623 -0.28534 1.38399 1.40994 1.52674 2.07937 2.40575 2.67035 3.10447 3.45675 3.56867 3.66066 3.79265 3.89131 4.06731 4.10871 4.30745 4.46797 4.59026 4.73297 4.79362 4.82800 4.93229 4.97236 5.00065 5.08397 5.14310 5.21260 5.36439 5.46140 5.53853 5.70943 5.88862 6.09941 6.19899 6.35994 6.64767 6.76377 7.36498 8.87172 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039838 B = 0.004077 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.680681 B = 6866.097475 C = 6972.309963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.003 6.003 3 C 0.271 3.729 4 C -0.552 4.552 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.957 3.043 9 H -0.269 1.269 10 H -0.269 1.269 11 H -0.280 1.280 12 S 2.798 3.202 13 O -1.014 7.014 14 O -1.012 7.012 15 N -1.118 6.118 16 C 0.125 3.875 17 C -0.114 4.114 18 H 0.107 0.893 19 C -0.118 4.118 20 C 0.062 3.938 21 H 0.071 0.929 22 N -0.849 5.849 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.029 0.971 28 H 0.019 0.981 29 H 0.267 0.733 30 H 0.421 0.579 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.347 0.653 36 H 0.349 0.651 37 H 0.066 0.934 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 -13.790 14.275 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.845 5.845 3 C 0.147 3.853 4 C -0.591 4.591 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.782 3.218 9 H -0.194 1.194 10 H -0.194 1.194 11 H -0.206 1.206 12 S 2.806 3.194 13 O -0.998 6.998 14 O -0.995 6.995 15 N -0.881 5.881 16 C -0.001 4.001 17 C -0.134 4.134 18 H 0.125 0.875 19 C -0.157 4.157 20 C -0.049 4.049 21 H 0.089 0.911 22 N -0.381 5.381 23 C -0.170 4.170 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.047 0.953 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.257 0.743 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.085 0.915 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.024 -13.876 12.729 20.097 hybrid contribution 1.047 0.559 0.406 1.254 sum -5.977 -13.317 13.135 19.637 Atomic orbital electron populations 1.21619 0.78153 1.03571 1.02582 1.57464 1.15702 1.21899 1.89412 1.18625 0.90570 0.80221 0.95856 1.21902 1.31832 1.10607 0.94780 0.92917 1.25766 0.94740 0.96817 1.01523 1.70014 1.33781 1.19437 1.33119 0.85522 0.78020 0.78458 0.79794 1.19383 1.19370 1.20551 1.01174 0.71968 0.72484 0.73758 1.93566 1.41143 1.85217 1.79844 1.93498 1.69119 1.61177 1.75726 1.55750 1.15531 1.84978 1.31846 1.21469 0.86121 1.00186 0.92328 1.22620 1.00516 0.95373 0.94908 0.87464 1.23009 0.98068 0.95526 0.99093 1.22751 0.93974 0.91797 0.96420 0.91119 1.58816 1.20185 1.05117 1.53947 1.23150 1.00889 0.95216 0.97706 0.90656 0.91099 0.90816 0.95339 0.96269 0.92360 0.74346 0.90961 0.90703 0.89238 0.89925 0.84047 0.83676 0.91518 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.85 10.69 127.77 1.37 4.21 16 2 N -1.00 -41.68 3.23 -543.22 -1.75 -43.44 16 3 C 0.27 13.88 5.10 85.63 0.44 14.32 16 4 C -0.55 -31.71 9.38 25.60 0.24 -31.47 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.63 5.46 84.65 0.46 1.10 16 7 N -0.92 -54.72 13.29 21.45 0.28 -54.44 16 8 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 S 2.80 112.15 6.09 -56.49 -0.34 111.81 16 13 O -1.01 -50.25 16.99 -128.00 -2.17 -52.43 16 14 O -1.01 -42.58 16.34 -128.00 -2.09 -44.67 16 15 N -1.12 -31.99 6.05 -187.50 -1.13 -33.12 16 16 C 0.12 2.83 6.10 86.38 0.53 3.35 16 17 C -0.11 -1.96 3.79 -10.27 -0.04 -2.00 16 18 H 0.11 1.65 8.12 -2.39 -0.02 1.63 16 19 C -0.12 -1.67 7.44 31.12 0.23 -1.44 16 20 C 0.06 0.86 4.95 45.44 0.23 1.08 16 21 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 22 N -0.85 -10.89 9.58 -166.49 -1.59 -12.49 16 23 C -0.13 -2.35 7.43 31.12 0.23 -2.12 16 24 H 0.08 1.92 8.05 -2.39 -0.02 1.90 16 25 H 0.07 2.43 8.07 -2.38 -0.02 2.41 16 26 H 0.07 2.31 7.05 -2.39 -0.02 2.30 16 27 H 0.03 1.46 8.11 -2.39 -0.02 1.44 16 28 H 0.02 1.07 7.50 -2.39 -0.02 1.05 16 29 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.42 10.57 8.64 -96.74 -0.84 9.73 16 31 H 0.07 1.73 7.50 -2.39 -0.02 1.71 16 32 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 33 H 0.09 1.36 8.10 -2.39 -0.02 1.34 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.35 3.62 9.08 -89.69 -0.81 2.80 16 36 H 0.35 3.37 9.07 -89.69 -0.81 2.55 16 37 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.08 1.65 7.90 -2.39 -0.02 1.63 16 Total: -1.00 -73.44 328.55 -4.48 -77.92 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -1.38 Total: 16.64 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 3.68 Total: -12.97 kcal Atomic # 7 Polarization: -139.28 SS G_CDS: -4.20 Total: -143.48 kcal Atomic # 8 Polarization: -92.83 SS G_CDS: -4.27 Total: -97.09 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 112.15 SS G_CDS: -0.34 Total: 111.81 kcal Total: -73.44 -4.48 -77.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331982822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.019 kcal (2) G-P(sol) polarization free energy of solvation -73.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds