Wall clock time and date at job start Mon Mar 30 2020 01:53:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46498 * 109.47174 * 2 1
4 4 N 1.40586 * 127.37901 * 275.13259 * 3 2 1
5 5 N 1.28920 * 106.81395 * 180.02562 * 4 3 2
6 6 N 1.28422 * 110.31446 * 359.72243 * 5 4 3
7 7 C 1.31470 * 110.51032 * 0.46583 * 6 5 4
8 8 N 1.38387 * 126.44209 * 179.81380 * 7 6 5
9 9 C 1.46900 * 110.99947 * 289.62232 * 8 7 6
10 10 C 1.50693 * 109.47301 * 288.01091 * 9 8 7
11 11 H 1.08001 * 120.00094 * 355.39445 * 10 9 8
12 12 C 1.37877 * 119.99809 * 175.38968 * 10 9 8
13 13 N 1.31514 * 119.99878 * 180.02562 * 12 10 9
14 14 Si 1.86799 * 120.00387 * 0.02562 * 12 10 9
15 15 H 1.48502 * 109.46858 * 89.99484 * 14 12 10
16 16 H 1.48496 * 109.47442 * 210.00079 * 14 12 10
17 17 H 1.48507 * 109.46705 * 329.99855 * 14 12 10
18 18 C 1.46901 * 110.99559 * 53.57861 * 8 7 6
19 19 C 1.50699 * 109.47252 * 66.04972 * 18 8 7
20 20 C 1.34513 * 125.78974 * 90.02020 * 19 18 8
21 21 C 1.41383 * 106.83735 * 179.97438 * 20 19 18
22 22 C 1.34507 * 106.84592 * 0.02562 * 21 20 19
23 23 O 1.34302 * 125.78754 * 270.02305 * 19 18 8
24 24 H 1.09000 * 109.47554 * 300.00054 * 1 2 3
25 25 H 1.08999 * 109.47499 * 60.00003 * 1 2 3
26 26 H 1.09000 * 109.47382 * 180.02562 * 1 2 3
27 27 H 1.08998 * 109.47036 * 239.99942 * 2 1 3
28 28 H 1.09004 * 109.46816 * 120.00125 * 2 1 3
29 29 H 1.09003 * 109.46813 * 48.01465 * 9 8 7
30 30 H 1.08999 * 109.46929 * 168.00411 * 9 8 7
31 31 H 0.96998 * 120.00236 * 180.02562 * 13 12 10
32 32 H 1.08994 * 109.47054 * 306.04706 * 18 8 7
33 33 H 1.09007 * 109.46714 * 186.04914 * 18 8 7
34 34 H 1.08000 * 126.58095 * 359.97438 * 20 19 18
35 35 H 1.08008 * 126.57769 * 180.02562 * 21 20 19
36 36 H 1.08003 * 125.79333 * 179.97438 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 7 2.2086 2.2192 -1.1127
5 7 2.6496 3.3435 -0.6617
6 7 2.7509 3.3017 0.6179
7 6 2.3834 2.1235 1.0708
8 7 2.3672 1.7202 2.3945
9 6 3.7323 1.5579 2.9121
10 6 4.3570 0.3284 2.3047
11 1 3.7721 -0.3133 1.6624
12 6 5.6753 0.0228 2.5687
13 7 6.2207 -1.0499 2.0382
14 14 6.6869 1.1324 3.6801
15 1 6.5577 0.6744 5.0868
16 1 8.1130 1.0763 3.2701
17 1 6.1938 2.5286 3.5667
18 6 1.5987 2.6600 3.2217
19 6 0.1481 2.6163 2.8158
20 6 -0.7898 1.8034 3.3345
21 6 -2.0011 2.0975 2.6673
22 6 -1.7310 3.0721 1.7805
23 8 -0.4276 3.3823 1.8749
24 1 -0.3634 0.5138 0.8900
25 1 -0.3634 0.5138 -0.8900
26 1 -0.3634 -1.0276 0.0005
27 1 1.8933 -0.5138 -0.8900
28 1 1.8932 -0.5139 0.8900
29 1 4.3263 2.4339 2.6514
30 1 3.6994 1.4509 3.9964
31 1 7.1480 -1.2651 2.2242
32 1 1.9855 3.6691 3.0798
33 1 1.6910 2.3797 4.2711
34 1 -0.6452 1.0673 4.1115
35 1 -2.9595 1.6294 2.8372
36 1 -2.4415 3.5277 1.1068
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001332481408.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:53:42
Heat of formation + Delta-G solvation = 150.170785 kcal
Electronic energy + Delta-G solvation = -22392.061638 eV
Core-core repulsion = 19109.707597 eV
Total energy + Delta-G solvation = -3282.354040 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 277.128 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-42.57944 -42.21222 -37.47838 -35.19093 -33.02707 -32.78817 -31.12985 -30.61925
-30.15898 -27.72121 -25.30303 -24.30812 -22.83643 -21.86538 -21.59176 -20.68218
-20.06709 -17.54983 -17.11785 -16.71538 -16.36327 -15.71755 -15.65934 -14.74743
-14.42500 -14.28833 -14.00014 -13.29111 -13.06572 -12.74076 -12.66887 -12.64757
-12.56603 -12.28039 -12.06968 -11.84419 -11.67017 -11.01460 -10.97094 -10.71456
-10.51024 -10.18978 -9.88389 -9.82647 -9.63987 -9.42774 -8.79139 -8.52306
-8.29721 -6.27496 -4.29839 1.63812 1.73613 2.35149 2.69336 2.90227
3.07591 3.16508 3.25740 3.27654 4.11436 4.24188 4.68358 4.81398
5.02407 5.06802 5.09198 5.16361 5.21065 5.43569 5.48533 5.57854
5.61315 5.80415 5.84183 5.99693 6.01322 6.13782 6.19800 6.22108
6.28478 6.52193 6.56395 6.69559 7.01789 7.22833 7.35797 7.55081
8.28079 8.72657 9.10876 9.30515 10.84408
Molecular weight = 277.13amu
Principal moments of inertia in cm(-1)
A = 0.018849 B = 0.006928 C = 0.006297
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1485.103699 B = 4040.329737 C = 4445.756965
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.124 3.876
3 N -0.352 5.352
4 N -0.101 5.101
5 N -0.046 5.046
6 N -0.363 5.363
7 C 0.456 3.544
8 N -0.459 5.459
9 C 0.166 3.834
10 C -0.529 4.529
11 H 0.080 0.920
12 C 0.079 3.921
13 N -0.889 5.889
14 Si 0.871 3.129
15 H -0.271 1.271
16 H -0.282 1.282
17 H -0.262 1.262
18 C 0.136 3.864
19 C -0.008 4.008
20 C -0.190 4.190
21 C -0.215 4.215
22 C -0.044 4.044
23 O -0.172 6.172
24 H 0.065 0.935
25 H 0.058 0.942
26 H 0.079 0.921
27 H 0.096 0.904
28 H 0.120 0.880
29 H 0.018 0.982
30 H 0.048 0.952
31 H 0.268 0.732
32 H 0.071 0.929
33 H 0.121 0.879
34 H 0.150 0.850
35 H 0.146 0.854
36 H 0.197 0.803
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.654 3.321 2.307 15.201
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.002 3.998
3 N -0.149 5.149
4 N -0.088 5.088
5 N -0.042 5.042
6 N -0.221 5.221
7 C 0.090 3.910
8 N -0.187 5.187
9 C 0.042 3.958
10 C -0.567 4.567
11 H 0.098 0.902
12 C -0.125 4.125
13 N -0.526 5.526
14 Si 0.697 3.303
15 H -0.197 1.197
16 H -0.208 1.208
17 H -0.187 1.187
18 C 0.009 3.991
19 C -0.059 4.059
20 C -0.210 4.210
21 C -0.234 4.234
22 C -0.113 4.113
23 O -0.067 6.067
24 H 0.084 0.916
25 H 0.077 0.923
26 H 0.098 0.902
27 H 0.115 0.885
28 H 0.138 0.862
29 H 0.036 0.964
30 H 0.066 0.934
31 H 0.078 0.922
32 H 0.089 0.911
33 H 0.139 0.861
34 H 0.168 0.832
35 H 0.163 0.837
36 H 0.213 0.787
Dipole moment (debyes) X Y Z Total
from point charges -14.297 3.873 1.131 14.856
hybrid contribution 0.588 0.024 1.089 1.238
sum -13.709 3.896 2.221 14.424
Atomic orbital electron populations
1.22141 0.93957 1.03134 1.02981 1.21967 0.94992 0.76562 1.06252
1.51391 1.44981 1.13850 1.04689 1.82384 1.21481 0.97534 1.07432
1.77771 1.09604 1.13646 1.03207 1.74738 1.24401 1.19167 1.03807
1.22752 0.92031 0.86198 0.90050 1.59201 1.19753 1.44877 0.94836
1.20531 0.80197 0.98700 0.96419 1.20853 0.96635 1.07576 1.31656
0.90156 1.24814 0.97245 0.94998 0.95487 1.69855 1.13970 1.25263
1.43512 0.86912 0.80208 0.81903 0.81271 1.19682 1.20792 1.18660
1.20678 0.84218 0.96537 0.97659 1.22371 0.95765 0.94979 0.92795
1.21578 0.92162 1.02660 1.04568 1.21788 0.99754 1.01517 1.00385
1.23987 0.83255 1.00909 1.03114 1.84096 1.21941 1.52452 1.48223
0.91568 0.92265 0.90241 0.88548 0.86222 0.96359 0.93444 0.92217
0.91084 0.86095 0.83185 0.83657 0.78668
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.13 10.24 37.16 0.38 -1.75 16
2 C 0.12 2.01 7.18 -4.05 -0.03 1.98 16
3 N -0.35 -6.97 3.69 -61.86 -0.23 -7.20 16
4 N -0.10 -2.13 13.93 60.35 0.84 -1.29 16
5 N -0.05 -1.03 13.38 60.35 0.81 -0.22 16
6 N -0.36 -8.12 11.81 30.10 0.36 -7.77 16
7 C 0.46 9.51 5.31 -320.40 -1.70 7.81 16
8 N -0.46 -8.88 4.45 -177.60 -0.79 -9.67 16
9 C 0.17 3.65 3.80 -4.98 -0.02 3.63 16
10 C -0.53 -13.80 9.39 -34.44 -0.32 -14.13 16
11 H 0.08 2.23 6.67 -52.49 -0.35 1.88 16
12 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16
13 N -0.89 -25.71 13.96 55.43 0.77 -24.93 16
14 Si 0.87 20.22 27.56 -169.99 -4.69 15.53 16
15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
17 H -0.26 -5.93 6.41 56.52 0.36 -5.57 16
18 C 0.14 2.16 5.44 -4.98 -0.03 2.13 16
19 C -0.01 -0.13 6.13 -35.63 -0.22 -0.35 16
20 C -0.19 -2.46 10.35 -39.70 -0.41 -2.87 16
21 C -0.22 -2.47 10.86 -39.70 -0.43 -2.91 16
22 C -0.04 -0.54 12.09 29.41 0.36 -0.19 16
23 O -0.17 -2.71 10.65 5.70 0.06 -2.65 16
24 H 0.07 0.94 7.62 -51.93 -0.40 0.54 16
25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16
27 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16
28 H 0.12 2.08 6.77 -51.93 -0.35 1.73 16
29 H 0.02 0.44 6.74 -51.93 -0.35 0.09 16
30 H 0.05 0.96 7.47 -51.93 -0.39 0.57 16
31 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16
32 H 0.07 1.16 7.84 -51.93 -0.41 0.75 16
33 H 0.12 1.56 7.86 -51.93 -0.41 1.15 16
34 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16
35 H 0.15 1.30 8.06 -52.48 -0.42 0.87 16
36 H 0.20 1.70 8.06 -52.48 -0.42 1.27 16
LS Contribution 314.19 15.07 4.73 4.73
Total: -1.00 -31.64 314.19 -5.02 -36.66
By element:
Atomic # 1 Polarization: 5.77 SS G_CDS: -4.36 Total: 1.41 kcal
Atomic # 6 Polarization: -2.07 SS G_CDS: -2.52 Total: -4.60 kcal
Atomic # 7 Polarization: -52.84 SS G_CDS: 1.76 Total: -51.08 kcal
Atomic # 8 Polarization: -2.71 SS G_CDS: 0.06 Total: -2.65 kcal
Atomic # 14 Polarization: 20.22 SS G_CDS: -4.69 Total: 15.53 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -31.64 -5.02 -36.66 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001332481408.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 186.830 kcal
(2) G-P(sol) polarization free energy of solvation -31.644 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.015 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.659 kcal
(6) G-S(sol) free energy of system = (1) + (5) 150.171 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds