Wall clock time and date at job start Mon Mar 30 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47174 * 2 1 4 4 N 1.40586 * 127.37901 * 275.13259 * 3 2 1 5 5 N 1.28920 * 106.81395 * 180.02562 * 4 3 2 6 6 N 1.28422 * 110.31446 * 359.72243 * 5 4 3 7 7 C 1.31470 * 110.51032 * 0.46583 * 6 5 4 8 8 N 1.38387 * 126.44209 * 179.81380 * 7 6 5 9 9 C 1.46900 * 110.99947 * 289.62232 * 8 7 6 10 10 C 1.50693 * 109.47301 * 288.01091 * 9 8 7 11 11 H 1.08001 * 120.00094 * 355.39445 * 10 9 8 12 12 C 1.37877 * 119.99809 * 175.38968 * 10 9 8 13 13 N 1.31514 * 119.99878 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00387 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46858 * 89.99484 * 14 12 10 16 16 H 1.48496 * 109.47442 * 210.00079 * 14 12 10 17 17 H 1.48507 * 109.46705 * 329.99855 * 14 12 10 18 18 C 1.46901 * 110.99559 * 53.57861 * 8 7 6 19 19 C 1.50699 * 109.47252 * 66.04972 * 18 8 7 20 20 C 1.34513 * 125.78974 * 90.02020 * 19 18 8 21 21 C 1.41383 * 106.83735 * 179.97438 * 20 19 18 22 22 C 1.34507 * 106.84592 * 0.02562 * 21 20 19 23 23 O 1.34302 * 125.78754 * 270.02305 * 19 18 8 24 24 H 1.09000 * 109.47554 * 300.00054 * 1 2 3 25 25 H 1.08999 * 109.47499 * 60.00003 * 1 2 3 26 26 H 1.09000 * 109.47382 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47036 * 239.99942 * 2 1 3 28 28 H 1.09004 * 109.46816 * 120.00125 * 2 1 3 29 29 H 1.09003 * 109.46813 * 48.01465 * 9 8 7 30 30 H 1.08999 * 109.46929 * 168.00411 * 9 8 7 31 31 H 0.96998 * 120.00236 * 180.02562 * 13 12 10 32 32 H 1.08994 * 109.47054 * 306.04706 * 18 8 7 33 33 H 1.09007 * 109.46714 * 186.04914 * 18 8 7 34 34 H 1.08000 * 126.58095 * 359.97438 * 20 19 18 35 35 H 1.08008 * 126.57769 * 180.02562 * 21 20 19 36 36 H 1.08003 * 125.79333 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2086 2.2192 -1.1127 5 7 2.6496 3.3435 -0.6617 6 7 2.7509 3.3017 0.6179 7 6 2.3834 2.1235 1.0708 8 7 2.3672 1.7202 2.3945 9 6 3.7323 1.5579 2.9121 10 6 4.3570 0.3284 2.3047 11 1 3.7721 -0.3133 1.6624 12 6 5.6753 0.0228 2.5687 13 7 6.2207 -1.0499 2.0382 14 14 6.6869 1.1324 3.6801 15 1 6.5577 0.6744 5.0868 16 1 8.1130 1.0763 3.2701 17 1 6.1938 2.5286 3.5667 18 6 1.5987 2.6600 3.2217 19 6 0.1481 2.6163 2.8158 20 6 -0.7898 1.8034 3.3345 21 6 -2.0011 2.0975 2.6673 22 6 -1.7310 3.0721 1.7805 23 8 -0.4276 3.3823 1.8749 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 4.3263 2.4339 2.6514 30 1 3.6994 1.4509 3.9964 31 1 7.1480 -1.2651 2.2242 32 1 1.9855 3.6691 3.0798 33 1 1.6910 2.3797 4.2711 34 1 -0.6452 1.0673 4.1115 35 1 -2.9595 1.6294 2.8372 36 1 -2.4415 3.5277 1.1068 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332481408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:42 Heat of formation + Delta-G solvation = 150.170785 kcal Electronic energy + Delta-G solvation = -22392.061638 eV Core-core repulsion = 19109.707597 eV Total energy + Delta-G solvation = -3282.354040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.57944 -42.21222 -37.47838 -35.19093 -33.02707 -32.78817 -31.12985 -30.61925 -30.15898 -27.72121 -25.30303 -24.30812 -22.83643 -21.86538 -21.59176 -20.68218 -20.06709 -17.54983 -17.11785 -16.71538 -16.36327 -15.71755 -15.65934 -14.74743 -14.42500 -14.28833 -14.00014 -13.29111 -13.06572 -12.74076 -12.66887 -12.64757 -12.56603 -12.28039 -12.06968 -11.84419 -11.67017 -11.01460 -10.97094 -10.71456 -10.51024 -10.18978 -9.88389 -9.82647 -9.63987 -9.42774 -8.79139 -8.52306 -8.29721 -6.27496 -4.29839 1.63812 1.73613 2.35149 2.69336 2.90227 3.07591 3.16508 3.25740 3.27654 4.11436 4.24188 4.68358 4.81398 5.02407 5.06802 5.09198 5.16361 5.21065 5.43569 5.48533 5.57854 5.61315 5.80415 5.84183 5.99693 6.01322 6.13782 6.19800 6.22108 6.28478 6.52193 6.56395 6.69559 7.01789 7.22833 7.35797 7.55081 8.28079 8.72657 9.10876 9.30515 10.84408 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.006928 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.103699 B = 4040.329737 C = 4445.756965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.124 3.876 3 N -0.352 5.352 4 N -0.101 5.101 5 N -0.046 5.046 6 N -0.363 5.363 7 C 0.456 3.544 8 N -0.459 5.459 9 C 0.166 3.834 10 C -0.529 4.529 11 H 0.080 0.920 12 C 0.079 3.921 13 N -0.889 5.889 14 Si 0.871 3.129 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.262 1.262 18 C 0.136 3.864 19 C -0.008 4.008 20 C -0.190 4.190 21 C -0.215 4.215 22 C -0.044 4.044 23 O -0.172 6.172 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.018 0.982 30 H 0.048 0.952 31 H 0.268 0.732 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.654 3.321 2.307 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.002 3.998 3 N -0.149 5.149 4 N -0.088 5.088 5 N -0.042 5.042 6 N -0.221 5.221 7 C 0.090 3.910 8 N -0.187 5.187 9 C 0.042 3.958 10 C -0.567 4.567 11 H 0.098 0.902 12 C -0.125 4.125 13 N -0.526 5.526 14 Si 0.697 3.303 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.187 1.187 18 C 0.009 3.991 19 C -0.059 4.059 20 C -0.210 4.210 21 C -0.234 4.234 22 C -0.113 4.113 23 O -0.067 6.067 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.138 0.862 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -14.297 3.873 1.131 14.856 hybrid contribution 0.588 0.024 1.089 1.238 sum -13.709 3.896 2.221 14.424 Atomic orbital electron populations 1.22141 0.93957 1.03134 1.02981 1.21967 0.94992 0.76562 1.06252 1.51391 1.44981 1.13850 1.04689 1.82384 1.21481 0.97534 1.07432 1.77771 1.09604 1.13646 1.03207 1.74738 1.24401 1.19167 1.03807 1.22752 0.92031 0.86198 0.90050 1.59201 1.19753 1.44877 0.94836 1.20531 0.80197 0.98700 0.96419 1.20853 0.96635 1.07576 1.31656 0.90156 1.24814 0.97245 0.94998 0.95487 1.69855 1.13970 1.25263 1.43512 0.86912 0.80208 0.81903 0.81271 1.19682 1.20792 1.18660 1.20678 0.84218 0.96537 0.97659 1.22371 0.95765 0.94979 0.92795 1.21578 0.92162 1.02660 1.04568 1.21788 0.99754 1.01517 1.00385 1.23987 0.83255 1.00909 1.03114 1.84096 1.21941 1.52452 1.48223 0.91568 0.92265 0.90241 0.88548 0.86222 0.96359 0.93444 0.92217 0.91084 0.86095 0.83185 0.83657 0.78668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.12 2.01 7.18 -4.05 -0.03 1.98 16 3 N -0.35 -6.97 3.69 -61.86 -0.23 -7.20 16 4 N -0.10 -2.13 13.93 60.35 0.84 -1.29 16 5 N -0.05 -1.03 13.38 60.35 0.81 -0.22 16 6 N -0.36 -8.12 11.81 30.10 0.36 -7.77 16 7 C 0.46 9.51 5.31 -320.40 -1.70 7.81 16 8 N -0.46 -8.88 4.45 -177.60 -0.79 -9.67 16 9 C 0.17 3.65 3.80 -4.98 -0.02 3.63 16 10 C -0.53 -13.80 9.39 -34.44 -0.32 -14.13 16 11 H 0.08 2.23 6.67 -52.49 -0.35 1.88 16 12 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 13 N -0.89 -25.71 13.96 55.43 0.77 -24.93 16 14 Si 0.87 20.22 27.56 -169.99 -4.69 15.53 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.26 -5.93 6.41 56.52 0.36 -5.57 16 18 C 0.14 2.16 5.44 -4.98 -0.03 2.13 16 19 C -0.01 -0.13 6.13 -35.63 -0.22 -0.35 16 20 C -0.19 -2.46 10.35 -39.70 -0.41 -2.87 16 21 C -0.22 -2.47 10.86 -39.70 -0.43 -2.91 16 22 C -0.04 -0.54 12.09 29.41 0.36 -0.19 16 23 O -0.17 -2.71 10.65 5.70 0.06 -2.65 16 24 H 0.07 0.94 7.62 -51.93 -0.40 0.54 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.12 2.08 6.77 -51.93 -0.35 1.73 16 29 H 0.02 0.44 6.74 -51.93 -0.35 0.09 16 30 H 0.05 0.96 7.47 -51.93 -0.39 0.57 16 31 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.07 1.16 7.84 -51.93 -0.41 0.75 16 33 H 0.12 1.56 7.86 -51.93 -0.41 1.15 16 34 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.15 1.30 8.06 -52.48 -0.42 0.87 16 36 H 0.20 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 314.19 15.07 4.73 4.73 Total: -1.00 -31.64 314.19 -5.02 -36.66 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.36 Total: 1.41 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.52 Total: -4.60 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 1.76 Total: -51.08 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: 0.06 Total: -2.65 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.69 Total: 15.53 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.64 -5.02 -36.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332481408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.830 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds