Wall clock time and date at job start Mon Mar 30 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47174 * 2 1 4 4 N 1.40586 * 127.37901 * 275.13259 * 3 2 1 5 5 N 1.28920 * 106.81395 * 180.02562 * 4 3 2 6 6 N 1.28422 * 110.31446 * 359.72243 * 5 4 3 7 7 C 1.31470 * 110.51032 * 0.46583 * 6 5 4 8 8 N 1.38387 * 126.44209 * 179.81380 * 7 6 5 9 9 C 1.46900 * 110.99947 * 289.62232 * 8 7 6 10 10 C 1.50693 * 109.47301 * 288.01091 * 9 8 7 11 11 H 1.08001 * 120.00094 * 355.39445 * 10 9 8 12 12 C 1.37877 * 119.99809 * 175.38968 * 10 9 8 13 13 N 1.31514 * 119.99878 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00387 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46858 * 89.99484 * 14 12 10 16 16 H 1.48496 * 109.47442 * 210.00079 * 14 12 10 17 17 H 1.48507 * 109.46705 * 329.99855 * 14 12 10 18 18 C 1.46901 * 110.99559 * 53.57861 * 8 7 6 19 19 C 1.50699 * 109.47252 * 66.04972 * 18 8 7 20 20 C 1.34513 * 125.78974 * 90.02020 * 19 18 8 21 21 C 1.41383 * 106.83735 * 179.97438 * 20 19 18 22 22 C 1.34507 * 106.84592 * 0.02562 * 21 20 19 23 23 O 1.34302 * 125.78754 * 270.02305 * 19 18 8 24 24 H 1.09000 * 109.47554 * 300.00054 * 1 2 3 25 25 H 1.08999 * 109.47499 * 60.00003 * 1 2 3 26 26 H 1.09000 * 109.47382 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47036 * 239.99942 * 2 1 3 28 28 H 1.09004 * 109.46816 * 120.00125 * 2 1 3 29 29 H 1.09003 * 109.46813 * 48.01465 * 9 8 7 30 30 H 1.08999 * 109.46929 * 168.00411 * 9 8 7 31 31 H 0.96998 * 120.00236 * 180.02562 * 13 12 10 32 32 H 1.08994 * 109.47054 * 306.04706 * 18 8 7 33 33 H 1.09007 * 109.46714 * 186.04914 * 18 8 7 34 34 H 1.08000 * 126.58095 * 359.97438 * 20 19 18 35 35 H 1.08008 * 126.57769 * 180.02562 * 21 20 19 36 36 H 1.08003 * 125.79333 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2086 2.2192 -1.1127 5 7 2.6496 3.3435 -0.6617 6 7 2.7509 3.3017 0.6179 7 6 2.3834 2.1235 1.0708 8 7 2.3672 1.7202 2.3945 9 6 3.7323 1.5579 2.9121 10 6 4.3570 0.3284 2.3047 11 1 3.7721 -0.3133 1.6624 12 6 5.6753 0.0228 2.5687 13 7 6.2207 -1.0499 2.0382 14 14 6.6869 1.1324 3.6801 15 1 6.5577 0.6744 5.0868 16 1 8.1130 1.0763 3.2701 17 1 6.1938 2.5286 3.5667 18 6 1.5987 2.6600 3.2217 19 6 0.1481 2.6163 2.8158 20 6 -0.7898 1.8034 3.3345 21 6 -2.0011 2.0975 2.6673 22 6 -1.7310 3.0721 1.7805 23 8 -0.4276 3.3823 1.8749 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 4.3263 2.4339 2.6514 30 1 3.6994 1.4509 3.9964 31 1 7.1480 -1.2651 2.2242 32 1 1.9855 3.6691 3.0798 33 1 1.6910 2.3797 4.2711 34 1 -0.6452 1.0673 4.1115 35 1 -2.9595 1.6294 2.8372 36 1 -2.4415 3.5277 1.1068 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332481408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:42 Heat of formation + Delta-G solvation = 128.948154 kcal Electronic energy + Delta-G solvation = -22392.981920 eV Core-core repulsion = 19109.707597 eV Total energy + Delta-G solvation = -3283.274322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.99658 -43.43363 -39.00636 -36.63556 -34.86345 -33.95346 -32.58281 -31.97886 -31.67204 -29.31349 -26.57872 -25.75044 -24.60863 -23.32905 -22.61590 -22.12670 -21.28884 -19.18734 -18.60604 -18.10588 -17.81932 -17.25017 -16.93833 -16.25166 -15.89333 -15.64665 -15.51177 -14.74067 -14.58432 -14.24695 -14.02327 -13.72504 -13.66906 -13.64183 -13.53562 -13.05820 -13.03455 -12.78130 -12.48870 -12.26017 -12.16673 -11.97192 -11.61247 -11.37734 -11.10299 -10.82285 -10.77371 -9.97769 -9.43602 -8.34032 -6.39957 0.02810 0.62181 0.95177 1.23854 1.34262 1.39237 1.46193 1.73558 2.09873 2.30698 2.66953 3.00426 3.33635 3.60554 3.75230 3.97143 4.11202 4.19017 4.24450 4.33296 4.35356 4.37778 4.40200 4.58660 4.68164 4.81488 4.91927 4.92603 5.07637 5.10732 5.13049 5.18505 5.32647 5.53909 5.66279 5.92709 6.26107 6.27189 6.64780 7.23749 7.45015 8.80705 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.006928 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.103699 B = 4040.329737 C = 4445.756965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.115 3.885 3 N -0.349 5.349 4 N -0.106 5.106 5 N -0.063 5.063 6 N -0.383 5.383 7 C 0.451 3.549 8 N -0.456 5.456 9 C 0.172 3.828 10 C -0.528 4.528 11 H 0.052 0.948 12 C 0.022 3.978 13 N -0.937 5.937 14 Si 0.931 3.069 15 H -0.250 1.250 16 H -0.290 1.290 17 H -0.253 1.253 18 C 0.134 3.866 19 C -0.040 4.040 20 C -0.179 4.179 21 C -0.213 4.213 22 C -0.048 4.048 23 O -0.202 6.202 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.003 0.997 30 H 0.077 0.923 31 H 0.268 0.732 32 H 0.061 0.939 33 H 0.151 0.849 34 H 0.166 0.834 35 H 0.175 0.825 36 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.503 3.457 3.672 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.005 4.005 3 N -0.147 5.147 4 N -0.093 5.093 5 N -0.059 5.059 6 N -0.241 5.241 7 C 0.085 3.915 8 N -0.183 5.183 9 C 0.047 3.953 10 C -0.567 4.567 11 H 0.071 0.929 12 C -0.178 4.178 13 N -0.576 5.576 14 Si 0.754 3.246 15 H -0.174 1.174 16 H -0.216 1.216 17 H -0.176 1.176 18 C 0.008 3.992 19 C -0.089 4.089 20 C -0.199 4.199 21 C -0.231 4.231 22 C -0.116 4.116 23 O -0.099 6.099 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.130 0.870 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.021 0.979 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.169 0.831 34 H 0.183 0.817 35 H 0.192 0.808 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -16.185 4.006 2.510 16.861 hybrid contribution 1.025 -0.081 0.601 1.191 sum -15.160 3.926 3.110 15.966 Atomic orbital electron populations 1.22061 0.90988 1.05089 1.02510 1.22278 0.97351 0.74840 1.06057 1.51673 1.44298 1.14608 1.04129 1.82290 1.21406 0.97557 1.08065 1.77730 1.10466 1.14279 1.03413 1.74658 1.25176 1.20340 1.03947 1.22930 0.91846 0.85968 0.90780 1.59215 1.18425 1.46229 0.94457 1.20342 0.81356 0.95951 0.97629 1.21135 0.96570 1.08299 1.30653 0.92940 1.25653 0.98641 0.96301 0.97161 1.69996 1.14386 1.27462 1.45781 0.85951 0.77910 0.80403 0.80305 1.17385 1.21580 1.17642 1.20837 0.84613 0.95240 0.98498 1.22249 0.95594 0.96749 0.94333 1.21877 0.92227 1.01670 1.04099 1.22122 1.00386 1.01105 0.99530 1.24717 0.82421 1.00959 1.03479 1.84071 1.23587 1.53356 1.48889 0.92466 0.92118 0.87001 0.87539 0.87580 0.97873 0.90549 0.92302 0.92087 0.83105 0.81656 0.80790 0.75834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 10.24 71.98 0.74 -2.82 16 2 C 0.12 3.68 7.18 86.38 0.62 4.30 16 3 N -0.35 -13.84 3.69 -349.63 -1.29 -15.13 16 4 N -0.11 -4.48 13.93 37.02 0.52 -3.96 16 5 N -0.06 -2.83 13.38 37.02 0.50 -2.34 16 6 N -0.38 -17.27 11.81 -58.69 -0.69 -17.96 16 7 C 0.45 18.81 5.31 260.65 1.38 20.19 16 8 N -0.46 -17.27 4.45 -715.79 -3.18 -20.46 16 9 C 0.17 7.41 3.80 85.55 0.33 7.74 16 10 C -0.53 -27.69 9.39 25.60 0.24 -27.45 16 11 H 0.05 2.98 6.67 -2.91 -0.02 2.96 16 12 C 0.02 1.19 5.47 84.65 0.46 1.65 16 13 N -0.94 -55.24 13.96 21.45 0.30 -54.94 16 14 Si 0.93 41.20 27.56 68.60 1.89 43.09 16 15 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.25 -10.70 6.41 99.48 0.64 -10.06 16 18 C 0.13 4.07 5.44 85.56 0.47 4.53 16 19 C -0.04 -1.13 6.13 24.83 0.15 -0.98 16 20 C -0.18 -4.16 10.35 22.19 0.23 -3.93 16 21 C -0.21 -4.20 10.86 22.19 0.24 -3.96 16 22 C -0.05 -1.06 12.09 66.97 0.81 -0.26 16 23 O -0.20 -6.15 10.65 -2.52 -0.03 -6.18 16 24 H 0.06 1.49 7.62 -2.39 -0.02 1.48 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 28 H 0.11 3.71 6.77 -2.38 -0.02 3.69 16 29 H 0.00 0.15 6.74 -2.39 -0.02 0.14 16 30 H 0.08 2.88 7.47 -2.39 -0.02 2.86 16 31 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.06 1.96 7.84 -2.39 -0.02 1.95 16 33 H 0.15 3.51 7.86 -2.38 -0.02 3.49 16 34 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.23 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -69.51 314.19 4.70 -64.80 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.03 Total: 14.06 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 5.67 Total: -0.99 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -3.86 Total: -114.80 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.03 Total: -6.18 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.89 Total: 43.09 kcal Total: -69.51 4.70 -64.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332481408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.750 kcal (2) G-P(sol) polarization free energy of solvation -69.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds