Wall clock time and date at job start Mon Mar 30 2020 01:53:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46498 * 109.47174 * 2 1
4 4 N 1.40586 * 127.37901 * 275.13259 * 3 2 1
5 5 N 1.28920 * 106.81395 * 180.02562 * 4 3 2
6 6 N 1.28422 * 110.31446 * 359.72243 * 5 4 3
7 7 C 1.31470 * 110.51032 * 0.46583 * 6 5 4
8 8 N 1.38387 * 126.44209 * 179.81380 * 7 6 5
9 9 C 1.46900 * 110.99947 * 289.62232 * 8 7 6
10 10 C 1.50693 * 109.47301 * 288.01091 * 9 8 7
11 11 H 1.08001 * 120.00094 * 355.39445 * 10 9 8
12 12 C 1.37877 * 119.99809 * 175.38968 * 10 9 8
13 13 N 1.31514 * 119.99878 * 180.02562 * 12 10 9
14 14 Si 1.86799 * 120.00387 * 0.02562 * 12 10 9
15 15 H 1.48502 * 109.46858 * 89.99484 * 14 12 10
16 16 H 1.48496 * 109.47442 * 210.00079 * 14 12 10
17 17 H 1.48507 * 109.46705 * 329.99855 * 14 12 10
18 18 C 1.46901 * 110.99559 * 53.57861 * 8 7 6
19 19 C 1.50699 * 109.47252 * 66.04972 * 18 8 7
20 20 C 1.34513 * 125.78974 * 90.02020 * 19 18 8
21 21 C 1.41383 * 106.83735 * 179.97438 * 20 19 18
22 22 C 1.34507 * 106.84592 * 0.02562 * 21 20 19
23 23 O 1.34302 * 125.78754 * 270.02305 * 19 18 8
24 24 H 1.09000 * 109.47554 * 300.00054 * 1 2 3
25 25 H 1.08999 * 109.47499 * 60.00003 * 1 2 3
26 26 H 1.09000 * 109.47382 * 180.02562 * 1 2 3
27 27 H 1.08998 * 109.47036 * 239.99942 * 2 1 3
28 28 H 1.09004 * 109.46816 * 120.00125 * 2 1 3
29 29 H 1.09003 * 109.46813 * 48.01465 * 9 8 7
30 30 H 1.08999 * 109.46929 * 168.00411 * 9 8 7
31 31 H 0.96998 * 120.00236 * 180.02562 * 13 12 10
32 32 H 1.08994 * 109.47054 * 306.04706 * 18 8 7
33 33 H 1.09007 * 109.46714 * 186.04914 * 18 8 7
34 34 H 1.08000 * 126.58095 * 359.97438 * 20 19 18
35 35 H 1.08008 * 126.57769 * 180.02562 * 21 20 19
36 36 H 1.08003 * 125.79333 * 179.97438 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 7 2.2086 2.2192 -1.1127
5 7 2.6496 3.3435 -0.6617
6 7 2.7509 3.3017 0.6179
7 6 2.3834 2.1235 1.0708
8 7 2.3672 1.7202 2.3945
9 6 3.7323 1.5579 2.9121
10 6 4.3570 0.3284 2.3047
11 1 3.7721 -0.3133 1.6624
12 6 5.6753 0.0228 2.5687
13 7 6.2207 -1.0499 2.0382
14 14 6.6869 1.1324 3.6801
15 1 6.5577 0.6744 5.0868
16 1 8.1130 1.0763 3.2701
17 1 6.1938 2.5286 3.5667
18 6 1.5987 2.6600 3.2217
19 6 0.1481 2.6163 2.8158
20 6 -0.7898 1.8034 3.3345
21 6 -2.0011 2.0975 2.6673
22 6 -1.7310 3.0721 1.7805
23 8 -0.4276 3.3823 1.8749
24 1 -0.3634 0.5138 0.8900
25 1 -0.3634 0.5138 -0.8900
26 1 -0.3634 -1.0276 0.0005
27 1 1.8933 -0.5138 -0.8900
28 1 1.8932 -0.5139 0.8900
29 1 4.3263 2.4339 2.6514
30 1 3.6994 1.4509 3.9964
31 1 7.1480 -1.2651 2.2242
32 1 1.9855 3.6691 3.0798
33 1 1.6910 2.3797 4.2711
34 1 -0.6452 1.0673 4.1115
35 1 -2.9595 1.6294 2.8372
36 1 -2.4415 3.5277 1.1068
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001332481408.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:53:42
Heat of formation + Delta-G solvation = 128.948154 kcal
Electronic energy + Delta-G solvation = -22392.981920 eV
Core-core repulsion = 19109.707597 eV
Total energy + Delta-G solvation = -3283.274322 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 277.128 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-43.99658 -43.43363 -39.00636 -36.63556 -34.86345 -33.95346 -32.58281 -31.97886
-31.67204 -29.31349 -26.57872 -25.75044 -24.60863 -23.32905 -22.61590 -22.12670
-21.28884 -19.18734 -18.60604 -18.10588 -17.81932 -17.25017 -16.93833 -16.25166
-15.89333 -15.64665 -15.51177 -14.74067 -14.58432 -14.24695 -14.02327 -13.72504
-13.66906 -13.64183 -13.53562 -13.05820 -13.03455 -12.78130 -12.48870 -12.26017
-12.16673 -11.97192 -11.61247 -11.37734 -11.10299 -10.82285 -10.77371 -9.97769
-9.43602 -8.34032 -6.39957 0.02810 0.62181 0.95177 1.23854 1.34262
1.39237 1.46193 1.73558 2.09873 2.30698 2.66953 3.00426 3.33635
3.60554 3.75230 3.97143 4.11202 4.19017 4.24450 4.33296 4.35356
4.37778 4.40200 4.58660 4.68164 4.81488 4.91927 4.92603 5.07637
5.10732 5.13049 5.18505 5.32647 5.53909 5.66279 5.92709 6.26107
6.27189 6.64780 7.23749 7.45015 8.80705
Molecular weight = 277.13amu
Principal moments of inertia in cm(-1)
A = 0.018849 B = 0.006928 C = 0.006297
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1485.103699 B = 4040.329737 C = 4445.756965
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.115 3.885
3 N -0.349 5.349
4 N -0.106 5.106
5 N -0.063 5.063
6 N -0.383 5.383
7 C 0.451 3.549
8 N -0.456 5.456
9 C 0.172 3.828
10 C -0.528 4.528
11 H 0.052 0.948
12 C 0.022 3.978
13 N -0.937 5.937
14 Si 0.931 3.069
15 H -0.250 1.250
16 H -0.290 1.290
17 H -0.253 1.253
18 C 0.134 3.866
19 C -0.040 4.040
20 C -0.179 4.179
21 C -0.213 4.213
22 C -0.048 4.048
23 O -0.202 6.202
24 H 0.056 0.944
25 H 0.060 0.940
26 H 0.111 0.889
27 H 0.106 0.894
28 H 0.106 0.894
29 H 0.003 0.997
30 H 0.077 0.923
31 H 0.268 0.732
32 H 0.061 0.939
33 H 0.151 0.849
34 H 0.166 0.834
35 H 0.175 0.825
36 H 0.225 0.775
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.503 3.457 3.672 17.256
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.005 4.005
3 N -0.147 5.147
4 N -0.093 5.093
5 N -0.059 5.059
6 N -0.241 5.241
7 C 0.085 3.915
8 N -0.183 5.183
9 C 0.047 3.953
10 C -0.567 4.567
11 H 0.071 0.929
12 C -0.178 4.178
13 N -0.576 5.576
14 Si 0.754 3.246
15 H -0.174 1.174
16 H -0.216 1.216
17 H -0.176 1.176
18 C 0.008 3.992
19 C -0.089 4.089
20 C -0.199 4.199
21 C -0.231 4.231
22 C -0.116 4.116
23 O -0.099 6.099
24 H 0.075 0.925
25 H 0.079 0.921
26 H 0.130 0.870
27 H 0.125 0.875
28 H 0.124 0.876
29 H 0.021 0.979
30 H 0.095 0.905
31 H 0.077 0.923
32 H 0.079 0.921
33 H 0.169 0.831
34 H 0.183 0.817
35 H 0.192 0.808
36 H 0.242 0.758
Dipole moment (debyes) X Y Z Total
from point charges -16.185 4.006 2.510 16.861
hybrid contribution 1.025 -0.081 0.601 1.191
sum -15.160 3.926 3.110 15.966
Atomic orbital electron populations
1.22061 0.90988 1.05089 1.02510 1.22278 0.97351 0.74840 1.06057
1.51673 1.44298 1.14608 1.04129 1.82290 1.21406 0.97557 1.08065
1.77730 1.10466 1.14279 1.03413 1.74658 1.25176 1.20340 1.03947
1.22930 0.91846 0.85968 0.90780 1.59215 1.18425 1.46229 0.94457
1.20342 0.81356 0.95951 0.97629 1.21135 0.96570 1.08299 1.30653
0.92940 1.25653 0.98641 0.96301 0.97161 1.69996 1.14386 1.27462
1.45781 0.85951 0.77910 0.80403 0.80305 1.17385 1.21580 1.17642
1.20837 0.84613 0.95240 0.98498 1.22249 0.95594 0.96749 0.94333
1.21877 0.92227 1.01670 1.04099 1.22122 1.00386 1.01105 0.99530
1.24717 0.82421 1.00959 1.03479 1.84071 1.23587 1.53356 1.48889
0.92466 0.92118 0.87001 0.87539 0.87580 0.97873 0.90549 0.92302
0.92087 0.83105 0.81656 0.80790 0.75834
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.56 10.24 71.98 0.74 -2.82 16
2 C 0.12 3.68 7.18 86.38 0.62 4.30 16
3 N -0.35 -13.84 3.69 -349.63 -1.29 -15.13 16
4 N -0.11 -4.48 13.93 37.02 0.52 -3.96 16
5 N -0.06 -2.83 13.38 37.02 0.50 -2.34 16
6 N -0.38 -17.27 11.81 -58.69 -0.69 -17.96 16
7 C 0.45 18.81 5.31 260.65 1.38 20.19 16
8 N -0.46 -17.27 4.45 -715.79 -3.18 -20.46 16
9 C 0.17 7.41 3.80 85.55 0.33 7.74 16
10 C -0.53 -27.69 9.39 25.60 0.24 -27.45 16
11 H 0.05 2.98 6.67 -2.91 -0.02 2.96 16
12 C 0.02 1.19 5.47 84.65 0.46 1.65 16
13 N -0.94 -55.24 13.96 21.45 0.30 -54.94 16
14 Si 0.93 41.20 27.56 68.60 1.89 43.09 16
15 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16
16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16
17 H -0.25 -10.70 6.41 99.48 0.64 -10.06 16
18 C 0.13 4.07 5.44 85.56 0.47 4.53 16
19 C -0.04 -1.13 6.13 24.83 0.15 -0.98 16
20 C -0.18 -4.16 10.35 22.19 0.23 -3.93 16
21 C -0.21 -4.20 10.86 22.19 0.24 -3.96 16
22 C -0.05 -1.06 12.09 66.97 0.81 -0.26 16
23 O -0.20 -6.15 10.65 -2.52 -0.03 -6.18 16
24 H 0.06 1.49 7.62 -2.39 -0.02 1.48 16
25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16
26 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16
27 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16
28 H 0.11 3.71 6.77 -2.38 -0.02 3.69 16
29 H 0.00 0.15 6.74 -2.39 -0.02 0.14 16
30 H 0.08 2.88 7.47 -2.39 -0.02 2.86 16
31 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16
32 H 0.06 1.96 7.84 -2.39 -0.02 1.95 16
33 H 0.15 3.51 7.86 -2.38 -0.02 3.49 16
34 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16
35 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16
36 H 0.23 3.24 8.06 -2.91 -0.02 3.21 16
Total: -1.00 -69.51 314.19 4.70 -64.80
By element:
Atomic # 1 Polarization: 13.04 SS G_CDS: 1.03 Total: 14.06 kcal
Atomic # 6 Polarization: -6.65 SS G_CDS: 5.67 Total: -0.99 kcal
Atomic # 7 Polarization: -110.94 SS G_CDS: -3.86 Total: -114.80 kcal
Atomic # 8 Polarization: -6.15 SS G_CDS: -0.03 Total: -6.18 kcal
Atomic # 14 Polarization: 41.20 SS G_CDS: 1.89 Total: 43.09 kcal
Total: -69.51 4.70 -64.80 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001332481408.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 193.750 kcal
(2) G-P(sol) polarization free energy of solvation -69.506 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.244 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.802 kcal
(6) G-S(sol) free energy of system = (1) + (5) 128.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds