Wall clock time and date at job start Mon Mar 30 2020 01:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47152 * 281.90892 * 3 2 1 5 5 C 1.36926 * 120.00076 * 271.71895 * 4 3 2 6 6 H 1.07999 * 120.00080 * 138.67663 * 5 4 3 7 7 C 1.38801 * 119.99856 * 318.67326 * 5 4 3 8 8 N 1.31569 * 120.00045 * 342.72808 * 7 5 4 9 9 Si 1.86797 * 120.00109 * 162.72974 * 7 5 4 10 10 H 1.48497 * 109.47266 * 89.99794 * 9 7 5 11 11 H 1.48505 * 109.47171 * 209.99918 * 9 7 5 12 12 H 1.48505 * 109.47033 * 329.99868 * 9 7 5 13 13 C 1.38228 * 119.99525 * 91.71254 * 4 3 2 14 14 N 1.31559 * 126.46220 * 354.30169 * 13 4 3 15 15 N 1.28421 * 110.49953 * 179.81505 * 14 13 4 16 16 N 1.28900 * 110.34861 * 0.45907 * 15 14 13 17 17 N 1.35443 * 126.45119 * 174.61322 * 13 4 3 18 18 C 1.46493 * 127.38972 * 359.97438 * 17 13 4 19 19 C 1.52999 * 109.47216 * 92.38612 * 18 17 13 20 20 H 1.09003 * 110.32898 * 305.69795 * 19 18 17 21 21 C 1.54477 * 110.37355 * 183.45010 * 19 18 17 22 22 C 1.54510 * 104.06220 * 217.18825 * 21 19 18 23 23 C 1.54477 * 104.06145 * 0.02562 * 22 21 19 24 24 O 1.44419 * 110.37388 * 67.94837 * 19 18 17 25 25 H 4.40645 * 5.51356 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.47562 * 161.90809 * 3 2 1 27 27 H 1.08995 * 109.47269 * 41.90877 * 3 2 1 28 28 H 0.96999 * 119.99955 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47431 * 212.38979 * 18 17 13 30 30 H 1.09009 * 109.47449 * 332.38241 * 18 17 13 31 31 H 1.08997 * 110.51277 * 335.83595 * 21 19 18 32 32 H 1.09006 * 110.51052 * 98.40516 * 21 19 18 33 33 H 1.08996 * 110.50832 * 118.64938 * 22 21 19 34 34 H 1.09002 * 110.51171 * 241.21400 * 22 21 19 35 35 H 1.09004 * 110.36749 * 142.81146 * 23 22 21 36 36 H 1.09002 * 110.37151 * 265.14547 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2842 1.3515 5 6 3.3287 0.7400 2.2393 6 1 3.0362 0.6221 3.2722 7 6 3.9015 1.9298 1.8117 8 7 4.5612 1.9708 0.6741 9 14 3.7360 3.4728 2.8515 10 1 4.8748 3.5545 3.8010 11 1 3.7406 4.6672 1.9690 12 1 2.4608 3.4235 3.6110 13 6 3.3991 -1.5869 1.7304 14 7 3.1609 -2.6705 1.0235 15 7 3.5303 -3.7181 1.6678 16 7 4.0141 -3.3903 2.8167 17 7 3.9473 -1.9886 2.9020 18 6 4.3786 -1.1437 4.0183 19 6 3.2309 -0.9958 5.0192 20 1 2.3351 -0.6308 4.5168 21 6 3.6343 -0.0383 6.1623 22 6 2.9838 -0.6589 7.4190 23 6 2.2650 -1.9182 6.8864 24 8 2.9643 -2.2579 5.6686 25 1 -1.0500 0.0002 0.0001 26 1 3.0089 0.9776 -0.3191 27 1 3.0097 -0.7639 -0.6864 28 1 4.9618 2.8022 0.3755 29 1 5.2346 -1.6034 4.5123 30 1 4.6614 -0.1606 3.6418 31 1 4.7185 -0.0068 6.2695 32 1 3.2404 0.9616 5.9800 33 1 3.7465 -0.9341 8.1474 34 1 2.2681 0.0346 7.8605 35 1 2.3404 -2.7317 7.6080 36 1 1.2197 -1.6961 6.6715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332497248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:57 Heat of formation + Delta-G solvation = 143.042593 kcal Electronic energy + Delta-G solvation = -22207.893304 eV Core-core repulsion = 18925.230163 eV Total energy + Delta-G solvation = -3282.663142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50807 -39.22061 -36.96963 -34.17451 -32.67261 -32.01823 -31.92673 -30.03422 -29.59413 -26.90995 -25.98824 -24.24107 -22.47720 -21.50529 -20.83578 -20.52140 -18.21932 -17.44621 -16.76071 -15.99326 -15.83846 -15.39804 -15.22779 -14.98269 -14.64333 -13.98605 -13.59665 -13.54445 -12.64762 -12.45483 -12.35097 -11.94659 -11.87603 -11.64129 -11.52329 -11.40898 -11.20240 -11.13779 -10.81012 -10.62460 -10.58277 -10.03720 -9.78297 -9.65412 -9.55961 -9.37023 -9.20227 -9.02658 -7.37704 -6.71289 -4.47126 2.42943 2.77748 2.90375 3.00171 3.02995 3.48733 3.61680 3.70148 3.83406 4.06322 4.55481 4.64956 4.66302 4.84013 4.98928 5.19312 5.22675 5.27065 5.40564 5.61216 5.73469 5.80572 5.83497 5.94540 6.01887 6.05107 6.19750 6.31246 6.63521 6.71857 6.79387 6.81072 6.97039 7.06462 7.29714 7.75824 8.17417 8.35144 8.79578 9.12845 9.92979 10.27644 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.009115 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.836061 B = 3071.026058 C = 4332.157053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.159 4.159 3 C 0.233 3.767 4 N -0.405 5.405 5 C -0.342 4.342 6 H 0.093 0.907 7 C 0.049 3.951 8 N -0.851 5.851 9 Si 0.917 3.083 10 H -0.270 1.270 11 H -0.276 1.276 12 H -0.265 1.265 13 C 0.485 3.515 14 N -0.416 5.416 15 N -0.043 5.043 16 N -0.129 5.129 17 N -0.417 5.417 18 C 0.139 3.861 19 C 0.059 3.941 20 H 0.076 0.924 21 C -0.148 4.148 22 C -0.152 4.152 23 C 0.042 3.958 24 O -0.358 6.358 25 H 0.207 0.793 26 H 0.131 0.869 27 H 0.088 0.912 28 H 0.277 0.723 29 H 0.089 0.911 30 H 0.140 0.860 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 3.061 8.697 9.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.160 4.160 3 C 0.110 3.890 4 N -0.112 5.112 5 C -0.470 4.470 6 H 0.110 0.890 7 C -0.160 4.160 8 N -0.485 5.485 9 Si 0.742 3.258 10 H -0.196 1.196 11 H -0.201 1.201 12 H -0.189 1.189 13 C 0.125 3.875 14 N -0.285 5.285 15 N -0.039 5.039 16 N -0.119 5.119 17 N -0.221 5.221 18 C 0.015 3.985 19 C 0.000 4.000 20 H 0.094 0.906 21 C -0.186 4.186 22 C -0.190 4.190 23 C -0.035 4.035 24 O -0.277 6.277 25 H 0.224 0.776 26 H 0.149 0.851 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.158 0.842 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.847 1.799 8.223 8.618 hybrid contribution -0.350 2.034 1.013 2.299 sum -2.197 3.833 9.236 10.238 Atomic orbital electron populations 1.24619 0.95655 1.04595 1.01447 1.24253 0.95403 0.97433 0.98959 1.18554 0.81860 1.05029 0.83583 1.41192 1.59610 0.97740 1.12696 1.19471 1.41664 0.92166 0.93742 0.88987 1.25505 0.93356 1.00004 0.97172 1.69888 1.29043 1.28359 1.21253 0.86071 0.79360 0.80607 0.79808 1.19569 1.20080 1.18932 1.22247 0.90678 0.90387 0.84211 1.74641 1.33589 0.93307 1.26951 1.77523 1.06415 1.20796 0.99189 1.82244 1.26362 0.87838 1.15428 1.50507 1.51305 1.05611 1.14665 1.22179 0.95596 0.96551 0.84166 1.23581 0.98546 0.84323 0.93519 0.90593 1.22914 1.02166 0.99664 0.93854 1.22914 1.00335 0.97629 0.98150 1.23379 0.95793 0.96943 0.87406 1.89305 1.76744 1.27151 1.34479 0.77558 0.85138 0.89447 0.91220 0.89301 0.84242 0.90148 0.89973 0.90724 0.90704 0.89362 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.59 19.25 29.55 0.57 -4.02 16 2 C -0.16 -3.38 13.67 -37.12 -0.51 -3.88 16 3 C 0.23 5.19 5.63 -6.83 -0.04 5.15 16 4 N -0.41 -9.53 2.54 -119.72 -0.30 -9.83 16 5 C -0.34 -7.70 6.86 -15.07 -0.10 -7.80 16 6 H 0.09 1.96 4.45 -52.49 -0.23 1.73 16 7 C 0.05 1.07 5.04 -17.46 -0.09 0.98 16 8 N -0.85 -19.78 11.46 55.49 0.64 -19.15 16 9 Si 0.92 17.00 29.59 -169.99 -5.03 11.97 16 10 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 11 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 12 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 13 C 0.49 11.80 8.37 -320.35 -2.68 9.12 16 14 N -0.42 -10.51 11.58 30.11 0.35 -10.16 16 15 N -0.04 -1.08 13.38 60.35 0.81 -0.27 16 16 N -0.13 -3.11 13.93 60.35 0.84 -2.27 16 17 N -0.42 -9.49 3.69 -61.85 -0.23 -9.72 16 18 C 0.14 2.59 5.24 -4.05 -0.02 2.57 16 19 C 0.06 1.00 2.78 -25.96 -0.07 0.93 16 20 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 21 C -0.15 -1.91 6.63 -25.16 -0.17 -2.07 16 22 C -0.15 -1.69 7.09 -25.16 -0.18 -1.86 16 23 C 0.04 0.55 7.63 37.93 0.29 0.84 16 24 O -0.36 -6.40 11.35 -35.23 -0.40 -6.80 16 25 H 0.21 2.97 7.80 -54.09 -0.42 2.54 16 26 H 0.13 2.98 5.62 -51.93 -0.29 2.69 16 27 H 0.09 1.93 7.70 -51.93 -0.40 1.54 16 28 H 0.28 6.07 8.31 -40.82 -0.34 5.73 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 30 H 0.14 2.64 5.42 -51.92 -0.28 2.36 16 31 H 0.08 0.94 7.87 -51.93 -0.41 0.54 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -28.28 310.04 -5.73 -34.01 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -4.07 Total: 7.58 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -3.00 Total: -0.04 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 2.10 Total: -51.40 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.40 Total: -6.80 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.28 -5.73 -34.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332497248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.053 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds