Wall clock time and date at job start Mon Mar 30 2020 01:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47152 * 281.90892 * 3 2 1 5 5 C 1.36926 * 120.00076 * 271.71895 * 4 3 2 6 6 H 1.07999 * 120.00080 * 138.67663 * 5 4 3 7 7 C 1.38801 * 119.99856 * 318.67326 * 5 4 3 8 8 N 1.31569 * 120.00045 * 342.72808 * 7 5 4 9 9 Si 1.86797 * 120.00109 * 162.72974 * 7 5 4 10 10 H 1.48497 * 109.47266 * 89.99794 * 9 7 5 11 11 H 1.48505 * 109.47171 * 209.99918 * 9 7 5 12 12 H 1.48505 * 109.47033 * 329.99868 * 9 7 5 13 13 C 1.38228 * 119.99525 * 91.71254 * 4 3 2 14 14 N 1.31559 * 126.46220 * 354.30169 * 13 4 3 15 15 N 1.28421 * 110.49953 * 179.81505 * 14 13 4 16 16 N 1.28900 * 110.34861 * 0.45907 * 15 14 13 17 17 N 1.35443 * 126.45119 * 174.61322 * 13 4 3 18 18 C 1.46493 * 127.38972 * 359.97438 * 17 13 4 19 19 C 1.52999 * 109.47216 * 92.38612 * 18 17 13 20 20 H 1.09003 * 110.32898 * 305.69795 * 19 18 17 21 21 C 1.54477 * 110.37355 * 183.45010 * 19 18 17 22 22 C 1.54510 * 104.06220 * 217.18825 * 21 19 18 23 23 C 1.54477 * 104.06145 * 0.02562 * 22 21 19 24 24 O 1.44419 * 110.37388 * 67.94837 * 19 18 17 25 25 H 4.40645 * 5.51356 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.47562 * 161.90809 * 3 2 1 27 27 H 1.08995 * 109.47269 * 41.90877 * 3 2 1 28 28 H 0.96999 * 119.99955 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47431 * 212.38979 * 18 17 13 30 30 H 1.09009 * 109.47449 * 332.38241 * 18 17 13 31 31 H 1.08997 * 110.51277 * 335.83595 * 21 19 18 32 32 H 1.09006 * 110.51052 * 98.40516 * 21 19 18 33 33 H 1.08996 * 110.50832 * 118.64938 * 22 21 19 34 34 H 1.09002 * 110.51171 * 241.21400 * 22 21 19 35 35 H 1.09004 * 110.36749 * 142.81146 * 23 22 21 36 36 H 1.09002 * 110.37151 * 265.14547 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2842 1.3515 5 6 3.3287 0.7400 2.2393 6 1 3.0362 0.6221 3.2722 7 6 3.9015 1.9298 1.8117 8 7 4.5612 1.9708 0.6741 9 14 3.7360 3.4728 2.8515 10 1 4.8748 3.5545 3.8010 11 1 3.7406 4.6672 1.9690 12 1 2.4608 3.4235 3.6110 13 6 3.3991 -1.5869 1.7304 14 7 3.1609 -2.6705 1.0235 15 7 3.5303 -3.7181 1.6678 16 7 4.0141 -3.3903 2.8167 17 7 3.9473 -1.9886 2.9020 18 6 4.3786 -1.1437 4.0183 19 6 3.2309 -0.9958 5.0192 20 1 2.3351 -0.6308 4.5168 21 6 3.6343 -0.0383 6.1623 22 6 2.9838 -0.6589 7.4190 23 6 2.2650 -1.9182 6.8864 24 8 2.9643 -2.2579 5.6686 25 1 -1.0500 0.0002 0.0001 26 1 3.0089 0.9776 -0.3191 27 1 3.0097 -0.7639 -0.6864 28 1 4.9618 2.8022 0.3755 29 1 5.2346 -1.6034 4.5123 30 1 4.6614 -0.1606 3.6418 31 1 4.7185 -0.0068 6.2695 32 1 3.2404 0.9616 5.9800 33 1 3.7465 -0.9341 8.1474 34 1 2.2681 0.0346 7.8605 35 1 2.3404 -2.7317 7.6080 36 1 1.2197 -1.6961 6.6715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332497248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:57 Heat of formation + Delta-G solvation = 127.617675 kcal Electronic energy + Delta-G solvation = -22208.562179 eV Core-core repulsion = 18925.230163 eV Total energy + Delta-G solvation = -3283.332016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.34530 -40.42650 -38.71392 -35.80508 -34.36823 -33.64770 -33.07937 -31.64903 -31.20369 -28.61296 -27.41032 -25.92246 -23.95912 -22.98526 -22.25406 -21.98617 -19.89312 -19.07596 -18.23106 -17.47778 -17.44037 -16.89783 -16.64282 -16.42770 -16.13977 -15.60630 -15.17794 -14.61766 -14.24431 -14.10473 -13.76630 -13.56504 -13.47566 -13.20132 -12.88243 -12.69516 -12.66417 -12.42002 -12.18576 -12.07848 -11.75346 -11.55704 -11.48319 -11.33809 -11.09496 -10.99102 -10.74007 -10.71722 -9.17080 -8.41725 -6.23480 0.58627 1.08975 1.43188 1.49749 1.59487 1.81292 1.91068 2.03074 2.26187 2.84031 2.91932 2.99385 3.57771 3.67623 3.71485 3.77796 3.93039 4.13352 4.17050 4.34873 4.46012 4.49760 4.58584 4.74769 4.80944 4.91202 4.93738 5.02595 5.06296 5.07843 5.15623 5.16170 5.29188 5.56419 5.87829 6.02718 6.42261 6.78538 7.04854 7.36475 8.06056 8.58942 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.009115 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.836061 B = 3071.026058 C = 4332.157053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.219 4.219 3 C 0.238 3.762 4 N -0.407 5.407 5 C -0.356 4.356 6 H 0.103 0.897 7 C 0.017 3.983 8 N -0.881 5.881 9 Si 0.978 3.022 10 H -0.255 1.255 11 H -0.281 1.281 12 H -0.259 1.259 13 C 0.466 3.534 14 N -0.436 5.436 15 N -0.057 5.057 16 N -0.135 5.135 17 N -0.414 5.414 18 C 0.132 3.868 19 C 0.064 3.936 20 H 0.050 0.950 21 C -0.144 4.144 22 C -0.142 4.142 23 C 0.032 3.968 24 O -0.392 6.392 25 H 0.252 0.748 26 H 0.122 0.878 27 H 0.076 0.924 28 H 0.280 0.720 29 H 0.103 0.897 30 H 0.137 0.863 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 4.656 10.889 12.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.221 4.221 3 C 0.115 3.885 4 N -0.114 5.114 5 C -0.483 4.483 6 H 0.120 0.880 7 C -0.190 4.190 8 N -0.515 5.515 9 Si 0.800 3.200 10 H -0.180 1.180 11 H -0.206 1.206 12 H -0.183 1.183 13 C 0.106 3.894 14 N -0.306 5.306 15 N -0.053 5.053 16 N -0.125 5.125 17 N -0.219 5.219 18 C 0.011 3.989 19 C 0.005 3.995 20 H 0.068 0.932 21 C -0.182 4.182 22 C -0.179 4.179 23 C -0.044 4.044 24 O -0.312 6.312 25 H 0.268 0.732 26 H 0.139 0.861 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.154 0.846 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.626 3.392 10.431 11.278 hybrid contribution -0.159 1.531 0.311 1.571 sum -2.785 4.923 10.742 12.140 Atomic orbital electron populations 1.25602 0.96500 1.01531 0.98466 1.24279 0.95836 1.00231 1.01730 1.18346 0.83191 1.03958 0.82976 1.41511 1.59176 0.97603 1.13125 1.19839 1.42134 0.92098 0.94268 0.87997 1.26295 0.92416 1.02253 0.98019 1.69983 1.29641 1.29191 1.22703 0.85142 0.79946 0.76505 0.78436 1.17971 1.20615 1.18262 1.22448 0.91381 0.90702 0.84872 1.74538 1.34434 0.93780 1.27810 1.77467 1.07193 1.21105 0.99584 1.82118 1.26202 0.88965 1.15191 1.50713 1.50763 1.05238 1.15190 1.22455 0.97096 0.95756 0.83628 1.23434 0.96582 0.85247 0.94268 0.93203 1.22953 1.03328 0.99049 0.92880 1.22904 1.00917 0.96626 0.97463 1.23654 0.95676 0.98873 0.86239 1.89265 1.77454 1.28019 1.36426 0.73210 0.86125 0.90634 0.90968 0.87909 0.84573 0.88759 0.89011 0.88921 0.88547 0.87646 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.21 19.25 74.32 1.43 -5.78 16 2 C -0.22 -9.33 13.67 31.13 0.43 -8.91 16 3 C 0.24 10.96 5.63 84.57 0.48 11.44 16 4 N -0.41 -19.55 2.54 -532.68 -1.35 -20.90 16 5 C -0.36 -16.00 6.86 84.03 0.58 -15.42 16 6 H 0.10 4.30 4.45 -2.91 -0.01 4.29 16 7 C 0.02 0.72 5.04 84.87 0.43 1.15 16 8 N -0.88 -41.20 11.46 21.65 0.25 -40.95 16 9 Si 0.98 33.48 29.59 68.60 2.03 35.51 16 10 H -0.26 -8.11 7.11 99.48 0.71 -7.41 16 11 H -0.28 -9.81 7.11 99.48 0.71 -9.10 16 12 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 13 C 0.47 23.25 8.37 260.63 2.18 25.43 16 14 N -0.44 -22.69 11.58 -58.67 -0.68 -23.37 16 15 N -0.06 -2.94 13.38 37.02 0.50 -2.45 16 16 N -0.13 -6.61 13.93 37.02 0.52 -6.09 16 17 N -0.41 -19.14 3.69 -349.59 -1.29 -20.43 16 18 C 0.13 4.92 5.24 86.38 0.45 5.37 16 19 C 0.06 2.10 2.78 31.10 0.09 2.18 16 20 H 0.05 1.89 7.00 -2.39 -0.02 1.87 16 21 C -0.14 -3.31 6.63 31.61 0.21 -3.11 16 22 C -0.14 -2.63 7.09 31.61 0.22 -2.41 16 23 C 0.03 0.77 7.63 72.48 0.55 1.33 16 24 O -0.39 -13.69 11.35 -148.98 -1.69 -15.39 16 25 H 0.25 6.17 7.80 -4.42 -0.03 6.14 16 26 H 0.12 5.72 5.62 -2.39 -0.01 5.71 16 27 H 0.08 3.54 7.70 -2.39 -0.02 3.52 16 28 H 0.28 12.29 8.31 -92.71 -0.77 11.52 16 29 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 30 H 0.14 5.12 5.42 -2.38 -0.01 5.11 16 31 H 0.09 1.91 7.87 -2.39 -0.02 1.89 16 32 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -61.98 310.04 6.43 -55.56 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 1.11 Total: 27.24 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 7.04 Total: 11.28 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -2.06 Total: -114.20 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -1.69 Total: -15.39 kcal Atomic # 14 Polarization: 33.48 SS G_CDS: 2.03 Total: 35.51 kcal Total: -61.98 6.43 -55.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332497248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.175 kcal (2) G-P(sol) polarization free energy of solvation -61.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds