Wall clock time and date at job start Mon Mar 30 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 119.99775 * 2 1 4 4 H 1.48503 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47456 * 299.99713 * 3 2 1 6 6 H 1.48498 * 109.47342 * 59.99990 * 3 2 1 7 7 C 1.37876 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99761 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00106 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99753 * 180.02562 * 10 9 7 12 12 O 1.21592 * 119.99860 * 359.97438 * 11 10 9 13 13 N 1.34768 * 119.99897 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00082 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47217 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.50803 * 55.08118 * 15 14 13 17 17 C 1.53036 * 109.50513 * 294.99775 * 15 14 13 18 18 N 1.46849 * 109.52274 * 180.83830 * 17 15 14 19 19 C 1.46842 * 111.20050 * 61.74759 * 18 17 15 20 20 C 1.53039 * 109.52266 * 298.25785 * 19 18 17 21 21 C 1.53123 * 109.31189 * 59.15550 * 20 19 18 22 22 F 1.39899 * 109.51921 * 62.27281 * 21 20 19 23 23 F 1.39895 * 109.52394 * 182.46447 * 21 20 19 24 24 H 0.96993 * 119.99905 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47308 * 60.00090 * 9 7 2 26 26 H 1.09003 * 109.46776 * 299.99543 * 9 7 2 27 27 H 0.96997 * 120.00138 * 359.97438 * 10 9 7 28 28 H 0.97001 * 120.00142 * 359.97438 * 13 11 10 29 29 H 1.08998 * 109.47175 * 59.99583 * 14 13 11 30 30 H 1.08998 * 109.47421 * 299.99736 * 14 13 11 31 31 H 1.09001 * 109.45883 * 60.82720 * 17 15 14 32 32 H 1.08995 * 109.46584 * 300.85793 * 17 15 14 33 33 H 1.00898 * 111.00328 * 297.64306 * 18 17 15 34 34 H 1.08995 * 109.46659 * 178.23678 * 19 18 17 35 35 H 1.09002 * 109.45412 * 58.25964 * 19 18 17 36 36 H 1.09002 * 109.50563 * 179.11883 * 20 19 18 37 37 H 1.09003 * 109.50107 * 299.19864 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6127 0.0018 11 6 1.7539 -4.8834 0.0015 12 8 0.5585 -5.1055 0.0006 13 7 2.6297 -5.9077 0.0031 14 6 2.1415 -7.2889 0.0034 15 6 3.3314 -8.2505 0.0047 16 1 3.9835 -8.0215 0.8476 17 6 4.1130 -8.0981 -1.3022 18 7 5.2437 -9.0351 -1.3099 19 6 4.7805 -10.4269 -1.2418 20 6 4.0187 -10.6489 0.0669 21 6 2.8259 -9.6908 0.1273 22 9 1.9490 -9.9690 -0.9266 23 9 2.1590 -9.8507 1.3466 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8904 27 1 3.1568 -3.4354 0.0021 28 1 3.5834 -5.7304 0.0042 29 1 1.5369 -7.4608 -0.8872 30 1 1.5349 -7.4598 0.8927 31 1 4.4866 -7.0775 -1.3849 32 1 3.4567 -8.3140 -2.1452 33 1 5.8875 -8.8312 -0.5602 34 1 5.6387 -11.0977 -1.2808 35 1 4.1209 -10.6317 -2.0850 36 1 3.6616 -11.6779 0.1100 37 1 4.6818 -10.4582 0.9107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332527590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:38 Heat of formation + Delta-G solvation = -140.276484 kcal Electronic energy + Delta-G solvation = -21850.274366 eV Core-core repulsion = 18104.636401 eV Total energy + Delta-G solvation = -3745.637965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.134 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.28336 -47.24722 -39.50022 -38.53870 -35.12476 -34.04074 -32.40263 -31.43582 -31.35210 -27.39853 -25.76718 -24.09372 -22.92801 -22.01255 -20.94976 -20.21424 -18.32960 -17.67830 -17.30144 -16.81281 -16.09537 -15.83582 -15.48923 -15.29090 -14.74609 -14.60940 -14.32067 -14.04454 -13.79075 -13.57939 -13.52297 -13.12827 -12.78845 -12.73054 -12.59925 -12.31550 -11.96866 -11.87680 -11.62192 -11.45645 -10.93209 -10.90138 -10.73988 -10.30028 -9.44388 -9.34637 -9.07488 -8.81027 -8.68943 -7.76959 -6.14674 -4.21290 3.05429 3.24595 3.31450 3.34359 3.41048 3.62693 3.72788 3.91051 3.94637 4.12111 4.24227 4.33953 4.58024 4.78493 4.81642 4.96183 5.03014 5.09304 5.19928 5.21495 5.24037 5.46644 5.60153 5.72976 5.84946 6.39033 6.74226 6.82589 7.08701 7.50964 7.54744 7.57946 7.89548 8.03852 8.76710 8.93005 9.32343 9.48038 10.95652 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.037182 B = 0.003234 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.876547 B = 8657.192274 C = 9113.822636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.728 5.728 11 C 0.693 3.307 12 O -0.598 6.598 13 N -0.756 5.756 14 C 0.149 3.851 15 C -0.177 4.177 16 H 0.105 0.895 17 C 0.062 3.938 18 N -0.681 5.681 19 C 0.057 3.943 20 C -0.197 4.197 21 C 0.298 3.702 22 F -0.193 7.193 23 F -0.197 7.197 24 H 0.265 0.735 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.386 0.614 28 H 0.391 0.609 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.345 0.655 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.130 -21.380 -0.513 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.380 5.380 11 C 0.393 3.607 12 O -0.477 6.477 13 N -0.414 5.414 14 C 0.023 3.977 15 C -0.199 4.199 16 H 0.123 0.877 17 C -0.068 4.068 18 N -0.309 5.309 19 C -0.073 4.073 20 C -0.237 4.237 21 C 0.261 3.739 22 F -0.174 7.174 23 F -0.177 7.177 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.218 0.782 28 H 0.224 0.776 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.163 0.837 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.845 -21.420 -1.220 24.507 hybrid contribution 0.748 0.932 1.149 1.658 sum 12.593 -20.488 -0.070 24.049 Atomic orbital electron populations 1.69992 1.06094 1.27164 1.49009 1.24954 0.94918 0.99428 0.94788 0.86353 0.79776 0.82973 0.77727 1.19670 1.20806 1.20835 1.21259 0.93287 0.90411 1.53012 0.91891 1.19000 0.87788 0.81050 0.97663 1.45709 1.10783 1.04331 1.77196 1.16121 0.85149 0.81031 0.78447 1.90891 1.14216 1.84176 1.58386 1.45046 1.08753 1.04706 1.82884 1.20897 0.93799 0.79634 1.03389 1.23202 1.00367 0.92951 1.03335 0.87659 1.22200 0.91765 0.97981 0.94866 1.60572 1.16116 1.02346 1.51844 1.22090 0.99557 0.90458 0.95191 1.23331 0.96832 1.00786 1.02769 1.20909 0.84812 0.96151 0.71980 1.93021 1.71931 1.94907 1.57510 1.93039 1.82910 1.96652 1.45137 0.92509 0.95682 0.95728 0.78178 0.77605 0.90888 0.91155 0.88710 0.89273 0.83692 0.89075 0.89604 0.88644 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.27 7.18 5.43 -5.19 -0.03 7.15 16 10 N -0.73 -15.55 5.55 -66.41 -0.37 -15.92 16 11 C 0.69 14.38 8.57 -86.93 -0.74 13.63 16 12 O -0.60 -15.31 16.34 5.29 0.09 -15.22 16 13 N -0.76 -10.91 5.30 -65.23 -0.35 -11.25 16 14 C 0.15 1.97 4.81 -4.04 -0.02 1.95 16 15 C -0.18 -1.58 2.01 -90.54 -0.18 -1.76 16 16 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 17 C 0.06 0.49 5.59 -3.83 -0.02 0.47 16 18 N -0.68 -4.39 6.87 -113.82 -0.78 -5.17 16 19 C 0.06 0.32 6.44 -3.84 -0.02 0.30 16 20 C -0.20 -1.21 5.60 -26.65 -0.15 -1.36 16 21 C 0.30 2.83 1.65 -26.60 -0.04 2.79 16 22 F -0.19 -2.21 15.72 2.25 0.04 -2.18 16 23 F -0.20 -2.30 16.58 2.25 0.04 -2.27 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.39 6.93 8.33 -40.82 -0.34 6.59 16 28 H 0.39 4.24 7.67 -40.82 -0.31 3.93 16 29 H 0.07 1.08 7.90 -51.93 -0.41 0.67 16 30 H 0.07 1.07 7.75 -51.93 -0.40 0.67 16 31 H 0.09 0.72 7.20 -51.93 -0.37 0.34 16 32 H 0.09 0.83 7.88 -51.93 -0.41 0.42 16 33 H 0.34 1.66 8.86 -39.29 -0.35 1.31 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.58 7.88 -51.93 -0.41 0.17 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -34.02 313.58 -7.60 -41.62 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.08 Total: 5.60 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -1.63 Total: 9.75 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.76 Total: -57.88 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.09 Total: -15.22 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.07 Total: -4.44 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.02 -7.60 -41.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332527590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.659 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds