Wall clock time and date at job start Mon Mar 30 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 119.99775 * 2 1 4 4 H 1.48503 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47456 * 299.99713 * 3 2 1 6 6 H 1.48498 * 109.47342 * 59.99990 * 3 2 1 7 7 C 1.37876 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99761 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00106 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99753 * 180.02562 * 10 9 7 12 12 O 1.21592 * 119.99860 * 359.97438 * 11 10 9 13 13 N 1.34768 * 119.99897 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00082 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47217 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.50803 * 55.08118 * 15 14 13 17 17 C 1.53036 * 109.50513 * 294.99775 * 15 14 13 18 18 N 1.46849 * 109.52274 * 180.83830 * 17 15 14 19 19 C 1.46842 * 111.20050 * 61.74759 * 18 17 15 20 20 C 1.53039 * 109.52266 * 298.25785 * 19 18 17 21 21 C 1.53123 * 109.31189 * 59.15550 * 20 19 18 22 22 F 1.39899 * 109.51921 * 62.27281 * 21 20 19 23 23 F 1.39895 * 109.52394 * 182.46447 * 21 20 19 24 24 H 0.96993 * 119.99905 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47308 * 60.00090 * 9 7 2 26 26 H 1.09003 * 109.46776 * 299.99543 * 9 7 2 27 27 H 0.96997 * 120.00138 * 359.97438 * 10 9 7 28 28 H 0.97001 * 120.00142 * 359.97438 * 13 11 10 29 29 H 1.08998 * 109.47175 * 59.99583 * 14 13 11 30 30 H 1.08998 * 109.47421 * 299.99736 * 14 13 11 31 31 H 1.09001 * 109.45883 * 60.82720 * 17 15 14 32 32 H 1.08995 * 109.46584 * 300.85793 * 17 15 14 33 33 H 1.00898 * 111.00328 * 297.64306 * 18 17 15 34 34 H 1.08995 * 109.46659 * 178.23678 * 19 18 17 35 35 H 1.09002 * 109.45412 * 58.25964 * 19 18 17 36 36 H 1.09002 * 109.50563 * 179.11883 * 20 19 18 37 37 H 1.09003 * 109.50107 * 299.19864 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6127 0.0018 11 6 1.7539 -4.8834 0.0015 12 8 0.5585 -5.1055 0.0006 13 7 2.6297 -5.9077 0.0031 14 6 2.1415 -7.2889 0.0034 15 6 3.3314 -8.2505 0.0047 16 1 3.9835 -8.0215 0.8476 17 6 4.1130 -8.0981 -1.3022 18 7 5.2437 -9.0351 -1.3099 19 6 4.7805 -10.4269 -1.2418 20 6 4.0187 -10.6489 0.0669 21 6 2.8259 -9.6908 0.1273 22 9 1.9490 -9.9690 -0.9266 23 9 2.1590 -9.8507 1.3466 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8904 27 1 3.1568 -3.4354 0.0021 28 1 3.5834 -5.7304 0.0042 29 1 1.5369 -7.4608 -0.8872 30 1 1.5349 -7.4598 0.8927 31 1 4.4866 -7.0775 -1.3849 32 1 3.4567 -8.3140 -2.1452 33 1 5.8875 -8.8312 -0.5602 34 1 5.6387 -11.0977 -1.2808 35 1 4.1209 -10.6317 -2.0850 36 1 3.6616 -11.6779 0.1100 37 1 4.6818 -10.4582 0.9107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332527590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:38 Heat of formation + Delta-G solvation = -168.359295 kcal Electronic energy + Delta-G solvation = -21851.492128 eV Core-core repulsion = 18104.636401 eV Total energy + Delta-G solvation = -3746.855727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.134 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.10779 -48.09660 -41.01287 -39.40066 -36.48587 -35.90847 -34.38120 -32.49727 -31.98537 -29.28694 -26.92579 -24.83792 -24.54881 -23.08072 -21.99028 -21.59068 -19.94777 -18.52428 -18.25595 -17.85822 -17.76240 -17.09260 -16.87354 -16.33122 -16.04108 -15.92714 -15.48517 -14.91900 -14.86070 -14.79450 -14.62344 -14.43089 -14.04187 -14.03058 -13.51729 -13.43870 -13.27286 -13.08248 -12.85858 -12.74161 -12.37636 -12.20477 -12.13239 -11.49519 -11.44083 -11.24478 -10.81428 -10.37175 -9.66306 -9.54349 -8.27573 -6.44105 1.44703 1.46489 1.59389 1.74093 2.19887 2.39717 2.62394 2.93813 3.04553 3.07707 3.23640 3.38803 3.59647 3.63203 3.86228 4.03982 4.27980 4.28706 4.41809 4.57810 4.62347 4.72197 4.80300 4.96071 5.08174 5.08708 5.27011 5.38541 5.49243 5.66056 5.85177 5.85474 6.21956 6.44330 6.67999 7.24601 7.29276 7.68787 8.85143 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.037182 B = 0.003234 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.876547 B = 8657.192274 C = 9113.822636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.251 1.251 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.284 3.716 10 N -0.719 5.719 11 C 0.691 3.309 12 O -0.651 6.651 13 N -0.724 5.724 14 C 0.149 3.851 15 C -0.162 4.162 16 H 0.131 0.869 17 C 0.068 3.932 18 N -0.680 5.680 19 C 0.058 3.942 20 C -0.186 4.186 21 C 0.284 3.716 22 F -0.209 7.209 23 F -0.212 7.212 24 H 0.268 0.732 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.407 0.593 28 H 0.414 0.586 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.359 0.641 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.801 -21.606 -0.320 27.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.590 4.590 8 H 0.104 0.896 9 C 0.160 3.840 10 N -0.373 5.373 11 C 0.390 3.610 12 O -0.534 6.534 13 N -0.383 5.383 14 C 0.023 3.977 15 C -0.184 4.184 16 H 0.149 0.851 17 C -0.063 4.063 18 N -0.309 5.309 19 C -0.071 4.071 20 C -0.226 4.226 21 C 0.247 3.753 22 F -0.190 7.190 23 F -0.193 7.193 24 H 0.077 0.923 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.242 0.758 28 H 0.252 0.748 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.179 0.821 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.622 -21.701 -1.024 26.759 hybrid contribution -0.435 0.895 1.084 1.472 sum 15.187 -20.806 0.060 25.759 Atomic orbital electron populations 1.70158 1.08350 1.28507 1.50076 1.26094 0.95782 1.03975 0.93906 0.85069 0.79122 0.77149 0.77588 1.17431 1.20533 1.20571 1.21633 0.94394 0.90311 1.52700 0.89569 1.18435 0.88159 0.83414 0.93951 1.45252 1.10987 1.03567 1.77482 1.16311 0.85030 0.81704 0.77944 1.90859 1.17012 1.84978 1.60515 1.44676 1.09129 1.03807 1.80677 1.20921 0.95735 0.79541 1.01492 1.23177 0.98643 0.91364 1.05187 0.85086 1.22107 0.91907 0.98914 0.93363 1.60554 1.15394 1.02349 1.52585 1.22143 1.00172 0.90438 0.94379 1.23343 0.95328 1.00092 1.03830 1.21468 0.85498 0.97391 0.70912 1.92990 1.72758 1.95052 1.58242 1.93009 1.83467 1.96777 1.46084 0.92271 0.99678 0.99752 0.75768 0.74845 0.92817 0.93252 0.87943 0.91069 0.82115 0.86583 0.90976 0.87901 0.86529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.99 42.20 29.54 68.60 2.03 44.22 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -30.05 9.28 25.60 0.24 -29.81 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.28 15.86 5.43 85.63 0.46 16.33 16 10 N -0.72 -30.86 5.55 -482.28 -2.68 -33.53 16 11 C 0.69 29.12 8.57 179.06 1.53 30.65 16 12 O -0.65 -34.90 16.34 -4.00 -0.07 -34.96 16 13 N -0.72 -20.32 5.30 -478.55 -2.53 -22.86 16 14 C 0.15 3.96 4.81 86.38 0.42 4.37 16 15 C -0.16 -2.62 2.01 -10.74 -0.02 -2.64 16 16 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 17 C 0.07 0.93 5.59 86.32 0.48 1.42 16 18 N -0.68 -6.65 6.87 -514.02 -3.53 -10.18 16 19 C 0.06 0.50 6.44 86.33 0.56 1.05 16 20 C -0.19 -1.77 5.60 30.65 0.17 -1.60 16 21 C 0.28 5.07 1.65 30.68 0.05 5.12 16 22 F -0.21 -4.84 15.72 44.97 0.71 -4.13 16 23 F -0.21 -4.86 16.58 44.97 0.75 -4.11 16 24 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 25 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 27 H 0.41 13.95 8.33 -92.71 -0.77 13.18 16 28 H 0.41 7.93 7.67 -92.71 -0.71 7.22 16 29 H 0.05 1.66 7.90 -2.39 -0.02 1.64 16 30 H 0.05 1.55 7.75 -2.39 -0.02 1.53 16 31 H 0.10 1.26 7.20 -2.39 -0.02 1.24 16 32 H 0.07 1.27 7.88 -2.39 -0.02 1.26 16 33 H 0.36 1.97 8.86 -89.70 -0.79 1.17 16 34 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 0.85 7.88 -2.39 -0.02 0.83 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -77.77 313.58 -1.85 -79.62 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -1.16 Total: 16.90 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 4.35 Total: 25.44 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -8.46 Total: -122.98 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.07 Total: -34.96 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 1.45 Total: -8.24 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -77.77 -1.85 -79.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332527590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.740 kcal (2) G-P(sol) polarization free energy of solvation -77.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds