Wall clock time and date at job start Mon Mar 30 2020 01:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46861 * 2 1 4 4 C 1.36938 * 120.00705 * 275.19434 * 3 2 1 5 5 H 1.07996 * 119.99390 * 323.13054 * 4 3 2 6 6 C 1.38811 * 120.00145 * 143.12575 * 4 3 2 7 7 N 1.31615 * 120.00020 * 338.74686 * 6 4 3 8 8 Si 1.86802 * 119.99689 * 158.74804 * 6 4 3 9 9 H 1.48503 * 109.47004 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47179 * 119.99915 * 8 6 4 11 11 H 1.48495 * 109.47054 * 240.00051 * 8 6 4 12 12 C 1.46508 * 119.99823 * 95.19357 * 3 2 1 13 13 C 1.50698 * 109.46932 * 89.99826 * 12 3 2 14 14 N 1.31265 * 126.20294 * 270.00431 * 13 12 3 15 15 N 1.28811 * 110.03662 * 180.02562 * 14 13 12 16 16 C 1.31384 * 109.26512 * 359.97438 * 15 14 13 17 17 C 1.46889 * 134.27015 * 180.02562 * 16 15 14 18 18 O 1.21735 * 120.78374 * 0.02562 * 17 16 15 19 19 N 1.35153 * 118.42928 * 179.97438 * 17 16 15 20 20 C 1.46493 * 119.85340 * 179.97438 * 19 17 16 21 21 C 1.38154 * 120.29131 * 0.26816 * 19 17 16 22 22 C 1.32812 * 121.83964 * 359.43162 * 21 19 17 23 23 N 1.34477 * 126.20286 * 90.00282 * 13 12 3 24 24 H 1.09003 * 109.47126 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46922 * 299.99744 * 1 2 3 26 26 H 1.08999 * 109.47284 * 59.99953 * 1 2 3 27 27 H 1.09000 * 109.47332 * 240.00562 * 2 1 3 28 28 H 1.08999 * 109.47284 * 120.00047 * 2 1 3 29 29 H 0.97000 * 119.99722 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.47205 * 330.00117 * 12 3 2 31 31 H 1.08990 * 109.47508 * 210.00026 * 12 3 2 32 32 H 1.09002 * 109.47043 * 90.00006 * 20 19 17 33 33 H 1.09002 * 109.47806 * 330.00227 * 20 19 17 34 34 H 1.09002 * 109.47368 * 209.99683 * 20 19 17 35 35 H 1.07999 * 119.07855 * 179.69844 * 21 19 17 36 36 H 1.08008 * 119.45419 * 180.29296 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1453 2.0627 -1.1810 5 1 2.4744 1.5455 -2.0700 6 6 1.8510 3.4182 -1.2353 7 7 1.0751 3.9603 -0.3207 8 14 2.5561 4.4727 -2.6065 9 1 3.3913 3.6299 -3.4995 10 1 1.4465 5.0747 -3.3885 11 1 3.3916 5.5519 -2.0212 12 6 2.3707 2.0336 1.2636 13 6 3.8256 1.7856 1.5682 14 7 4.3135 0.7771 2.2523 15 7 5.5961 0.8721 2.3243 16 6 5.9874 1.9513 1.6853 17 6 7.2928 2.5735 1.4273 18 8 8.3175 2.0692 1.8487 19 7 7.3293 3.7185 0.7101 20 6 8.6143 4.3658 0.4349 21 6 6.1597 4.2843 0.2407 22 6 4.9741 3.7283 0.4625 23 7 4.8594 2.5573 1.1885 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.8692 4.9074 -0.3590 30 1 1.7567 1.6258 2.0667 31 1 2.1946 3.1059 1.1804 32 1 9.0223 3.9809 -0.4997 33 1 9.3089 4.1556 1.2483 34 1 8.4682 5.4427 0.3512 35 1 6.2113 5.2021 -0.3262 36 1 4.0845 4.2014 0.0734 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333395240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:59 Heat of formation + Delta-G solvation = 97.629820 kcal Electronic energy + Delta-G solvation = -22167.188449 eV Core-core repulsion = 18882.556062 eV Total energy + Delta-G solvation = -3284.632387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.07874 -40.10238 -37.19427 -36.24020 -34.55409 -32.08937 -31.49521 -30.05948 -29.06689 -27.70127 -26.17375 -23.95628 -23.74180 -23.24979 -21.15863 -20.19377 -18.61439 -18.09785 -17.15831 -16.65142 -16.46140 -15.39142 -15.16943 -15.02741 -14.22275 -14.06327 -13.92986 -13.75582 -13.22458 -13.12482 -12.57952 -12.42510 -12.08554 -11.94453 -11.45481 -11.36545 -11.25637 -11.02252 -10.79381 -10.56954 -10.50181 -10.39544 -10.29472 -10.02902 -9.91666 -8.88603 -8.85008 -7.90188 -6.98124 -6.16536 -3.70427 1.25161 1.59689 2.39113 2.76208 3.00650 3.14575 3.20448 3.23006 3.52156 4.08801 4.17148 4.64300 4.82570 4.94852 4.98253 5.15003 5.23719 5.37348 5.44554 5.46332 5.71539 5.96708 6.07500 6.22883 6.33297 6.42299 6.43309 6.61874 6.64738 6.82795 6.91231 7.05423 7.22228 7.36740 7.53697 7.72576 8.16777 8.80801 8.98773 9.42128 10.02371 10.85457 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.007974 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.677691 B = 3510.431124 C = 4797.337736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.139 3.861 3 N -0.568 5.568 4 C -0.257 4.257 5 H 0.065 0.935 6 C 0.010 3.990 7 N -0.880 5.880 8 Si 0.883 3.117 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.211 3.789 13 C 0.225 3.775 14 N -0.300 5.300 15 N -0.216 5.216 16 C 0.073 3.927 17 C 0.600 3.400 18 O -0.501 6.501 19 N -0.536 5.536 20 C 0.079 3.921 21 C 0.051 3.949 22 C 0.019 3.981 23 N -0.382 5.382 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.260 0.740 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.179 0.821 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.901 5.331 -0.380 8.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.013 3.987 3 N -0.287 5.287 4 C -0.387 4.387 5 H 0.083 0.917 6 C -0.190 4.190 7 N -0.522 5.522 8 Si 0.711 3.289 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.080 3.920 13 C -0.042 4.042 14 N -0.144 5.144 15 N -0.062 5.062 16 C -0.189 4.189 17 C 0.388 3.612 18 O -0.373 6.373 19 N -0.259 5.259 20 C -0.062 4.062 21 C -0.068 4.068 22 C -0.101 4.101 23 N -0.068 5.068 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.196 0.804 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.495 3.884 0.674 8.469 hybrid contribution 0.168 1.836 -1.684 2.497 sum 7.664 5.720 -1.010 9.616 Atomic orbital electron populations 1.22179 0.98727 0.98728 1.02086 1.20983 0.92439 0.86104 0.99130 1.43824 1.71503 1.10777 1.02575 1.19200 1.38922 0.91905 0.88628 0.91718 1.25188 0.97182 0.98869 0.97774 1.69967 1.33717 1.12464 1.36026 0.86535 0.79371 0.80462 0.82492 1.19688 1.21035 1.20781 1.19827 0.79881 1.03386 0.88924 1.27637 0.95717 0.87554 0.93334 1.74755 1.00405 1.19619 1.19595 1.74446 1.05065 1.12064 1.14621 1.24388 0.88689 0.98079 1.07724 1.16481 0.86245 0.79968 0.78530 1.90868 1.33858 1.61984 1.50604 1.45169 1.08189 1.23058 1.49493 1.21964 0.83372 0.97793 1.03114 1.21231 0.83192 1.00431 1.01953 1.21218 0.99573 0.88331 1.00946 1.43661 1.07669 1.18789 1.36697 0.94718 0.93471 0.92608 0.94084 0.93466 0.92976 0.90852 0.86391 0.91104 0.89302 0.89684 0.80381 0.79894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.21 37.16 0.38 -2.60 16 2 C 0.14 2.84 6.40 -4.04 -0.03 2.81 16 3 N -0.57 -12.88 2.42 -174.61 -0.42 -13.30 16 4 C -0.26 -6.18 9.46 -15.06 -0.14 -6.32 16 5 H 0.07 1.62 7.91 -52.49 -0.42 1.21 16 6 C 0.01 0.24 4.22 -17.43 -0.07 0.17 16 7 N -0.88 -21.25 11.41 55.49 0.63 -20.62 16 8 Si 0.88 17.99 28.76 -169.99 -4.89 13.10 16 9 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 12 C 0.21 4.54 5.79 -5.19 -0.03 4.51 16 13 C 0.22 4.84 7.70 -155.29 -1.20 3.65 16 14 N -0.30 -6.80 12.23 32.73 0.40 -6.40 16 15 N -0.22 -4.93 12.28 32.34 0.40 -4.54 16 16 C 0.07 1.52 8.12 -154.30 -1.25 0.27 16 17 C 0.60 11.01 7.66 -12.59 -0.10 10.91 16 18 O -0.50 -10.06 16.79 5.16 0.09 -9.98 16 19 N -0.54 -7.45 3.06 -124.91 -0.38 -7.83 16 20 C 0.08 0.72 10.42 59.84 0.62 1.35 16 21 C 0.05 0.66 10.24 -16.56 -0.17 0.49 16 22 C 0.02 0.31 10.87 -16.51 -0.18 0.13 16 23 N -0.38 -7.66 2.97 -58.39 -0.17 -7.83 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 29 H 0.26 6.02 8.31 -40.82 -0.34 5.68 16 30 H 0.07 1.52 8.07 -51.93 -0.42 1.10 16 31 H 0.12 2.68 5.46 -51.93 -0.28 2.40 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.86 7.45 -51.93 -0.39 0.47 16 34 H 0.08 0.50 8.03 -51.93 -0.42 0.08 16 35 H 0.18 1.54 8.05 -52.49 -0.42 1.12 16 36 H 0.18 3.19 6.38 -52.48 -0.33 2.86 16 LS Contribution 310.69 15.07 4.68 4.68 Total: -1.00 -29.59 310.69 -6.17 -35.76 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.34 Total: 1.59 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: -2.16 Total: 15.37 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.45 Total: -60.52 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -4.89 Total: 13.10 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.59 -6.17 -35.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333395240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.390 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds