Wall clock time and date at job start Mon Mar 30 2020 01:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47058 * 164.26507 * 3 2 1 5 5 C 1.36925 * 119.99597 * 265.23261 * 4 3 2 6 6 H 1.08002 * 119.99656 * 143.33375 * 5 4 3 7 7 C 1.38796 * 120.00411 * 323.32053 * 5 4 3 8 8 N 1.31564 * 119.99841 * 340.69422 * 7 5 4 9 9 Si 1.86802 * 120.00061 * 160.68574 * 7 5 4 10 10 H 1.48493 * 109.46904 * 60.00806 * 9 7 5 11 11 H 1.48497 * 109.46951 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47138 * 300.00560 * 9 7 5 13 13 C 1.38224 * 119.99858 * 85.22813 * 4 3 2 14 14 N 1.31566 * 126.46043 * 354.78399 * 13 4 3 15 15 N 1.28417 * 110.49810 * 180.30011 * 14 13 4 16 16 N 1.28907 * 110.35403 * 359.74377 * 15 14 13 17 17 N 1.35431 * 126.45642 * 174.65923 * 13 4 3 18 18 C 1.46503 * 127.38699 * 359.97438 * 17 13 4 19 19 C 1.52995 * 109.47623 * 88.86149 * 18 17 13 20 20 H 1.08996 * 110.43498 * 302.97520 * 19 18 17 21 21 C 1.54807 * 110.49064 * 180.28250 * 19 18 17 22 22 C 1.54990 * 102.09334 * 220.44217 * 21 19 18 23 23 O 1.44378 * 103.49305 * 37.02704 * 22 21 19 24 24 C 1.43743 * 106.96949 * 319.93633 * 23 22 21 25 25 H 4.40645 * 5.51446 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.47440 * 44.26169 * 3 2 1 27 27 H 1.09003 * 109.47292 * 284.26117 * 3 2 1 28 28 H 0.97004 * 120.00060 * 179.97438 * 8 7 5 29 29 H 1.09009 * 109.47289 * 208.86300 * 18 17 13 30 30 H 1.09008 * 109.47166 * 328.85843 * 18 17 13 31 31 H 1.09006 * 110.90936 * 338.64560 * 21 19 18 32 32 H 1.09011 * 110.90513 * 102.24242 * 21 19 18 33 33 H 1.09003 * 110.62206 * 278.52269 * 22 21 19 34 34 H 1.08999 * 110.75094 * 155.59248 * 22 21 19 35 35 H 1.09001 * 109.88302 * 267.08233 * 24 23 22 36 36 H 1.09011 * 110.00190 * 146.00524 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3304 -0.3746 5 6 3.4547 1.5997 -1.6782 6 1 3.2433 2.5727 -2.0964 7 6 4.0520 0.6223 -2.4620 8 7 4.6511 -0.4018 -1.8934 9 14 4.0050 0.7607 -4.3243 10 1 4.6761 2.0169 -4.7443 11 1 4.7080 -0.4013 -4.9249 12 1 2.5930 0.7761 -4.7840 13 6 3.2698 2.3131 0.5879 14 7 2.9111 2.2256 1.8507 15 7 3.1723 3.3202 2.4693 16 7 3.7120 4.1715 1.6657 17 7 3.7995 3.5466 0.4094 18 6 4.3419 4.1111 -0.8290 19 6 3.2196 4.7947 -1.6124 20 1 2.4140 4.0896 -1.8168 21 6 3.7664 5.3942 -2.9308 22 6 3.0169 6.7486 -3.0071 23 8 2.9601 7.1802 -1.6305 24 6 2.6852 6.0140 -0.8363 25 1 -1.0502 -0.0004 -0.0001 26 1 3.0097 -0.7351 -0.7172 27 1 3.0095 -0.2523 0.9960 28 1 5.0682 -1.0851 -2.4412 29 1 5.1139 4.8419 -0.5876 30 1 4.7733 3.3132 -1.4336 31 1 4.8438 5.5485 -2.8706 32 1 3.5126 4.7607 -3.7809 33 1 2.0127 6.6097 -3.4076 34 1 3.5740 7.4648 -3.6111 35 1 1.6106 5.9143 -0.6836 36 1 3.1906 6.0910 0.1265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340343950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:00 Heat of formation + Delta-G solvation = 131.332182 kcal Electronic energy + Delta-G solvation = -22236.072781 eV Core-core repulsion = 18952.901838 eV Total energy + Delta-G solvation = -3283.170943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.37299 -40.50072 -38.75792 -36.24607 -34.37363 -33.75314 -33.05483 -31.52321 -30.39358 -28.68224 -27.73452 -25.96361 -24.05965 -23.25836 -22.52565 -21.56007 -19.79543 -19.10095 -18.18909 -17.54056 -17.34664 -17.15418 -16.75558 -16.46116 -15.94587 -15.61795 -15.19855 -14.78570 -14.23231 -14.11794 -13.87532 -13.57460 -13.55723 -13.18255 -12.93155 -12.75039 -12.60709 -12.40738 -12.20387 -11.98773 -11.87552 -11.66571 -11.44818 -11.33797 -11.07394 -10.97162 -10.69713 -10.68283 -9.22726 -8.43211 -6.16835 0.55563 1.08208 1.44362 1.51136 1.57868 1.80992 1.90503 2.02867 2.26085 2.87832 2.94605 2.98297 3.46052 3.61610 3.67127 3.70806 3.93026 4.16599 4.19101 4.29633 4.44796 4.51716 4.57776 4.72045 4.78018 4.84225 4.93085 4.96425 5.03344 5.06974 5.15320 5.15673 5.31983 5.56632 5.84560 6.00201 6.42003 6.78158 7.06432 7.34895 8.05567 8.58325 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.012774 B = 0.009083 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.496321 B = 3082.047222 C = 4415.188140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.219 4.219 3 C 0.238 3.762 4 N -0.404 5.404 5 C -0.358 4.358 6 H 0.115 0.885 7 C 0.013 3.987 8 N -0.882 5.882 9 Si 0.978 3.022 10 H -0.244 1.244 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.465 3.535 14 N -0.434 5.434 15 N -0.052 5.052 16 N -0.145 5.145 17 N -0.420 5.420 18 C 0.139 3.861 19 C -0.134 4.134 20 H 0.078 0.922 21 C -0.139 4.139 22 C 0.043 3.957 23 O -0.395 6.395 24 C 0.058 3.942 25 H 0.251 0.749 26 H 0.126 0.874 27 H 0.072 0.928 28 H 0.280 0.720 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.044 0.956 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 5.645 -8.389 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.221 4.221 3 C 0.115 3.885 4 N -0.110 5.110 5 C -0.485 4.485 6 H 0.132 0.868 7 C -0.193 4.193 8 N -0.517 5.517 9 Si 0.800 3.200 10 H -0.168 1.168 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.105 3.895 14 N -0.304 5.304 15 N -0.048 5.048 16 N -0.135 5.135 17 N -0.225 5.225 18 C 0.018 3.982 19 C -0.154 4.154 20 H 0.096 0.904 21 C -0.177 4.177 22 C -0.033 4.033 23 O -0.314 6.314 24 C -0.019 4.019 25 H 0.267 0.733 26 H 0.143 0.857 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.062 0.938 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.769 6.042 -7.215 9.575 hybrid contribution -0.014 -0.772 -1.333 1.541 sum -1.784 5.269 -8.548 10.199 Atomic orbital electron populations 1.25604 0.96508 0.98644 1.01354 1.24287 0.95834 1.01735 1.00254 1.18375 0.83036 0.85484 1.01619 1.41586 1.58764 1.07193 1.03470 1.20115 1.41030 1.03802 0.83574 0.86754 1.26236 0.92659 0.95700 1.04679 1.69990 1.30717 1.12565 1.38473 0.85181 0.78962 0.79351 0.76458 1.16755 1.20902 1.19515 1.22303 0.91937 0.85807 0.89446 1.74586 1.34736 1.18523 1.02573 1.77475 1.07482 0.96152 1.23694 1.82033 1.25840 1.18782 0.86835 1.50806 1.50650 1.10555 1.10503 1.22275 0.95723 0.99940 0.80310 1.23002 0.98451 0.97315 0.96655 0.90355 1.23163 1.02185 0.96807 0.95543 1.23788 1.00553 0.95806 0.83106 1.88836 1.92907 1.30896 1.18778 1.23090 0.99071 0.84352 0.95356 0.73295 0.85687 0.91016 0.91041 0.87928 0.86195 0.88608 0.88232 0.91479 0.86279 0.93805 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.10 19.25 74.32 1.43 -5.67 16 2 C -0.22 -9.17 13.64 31.12 0.42 -8.74 16 3 C 0.24 10.71 5.52 84.57 0.47 11.18 16 4 N -0.40 -18.72 2.58 -532.68 -1.38 -20.10 16 5 C -0.36 -15.57 7.15 84.03 0.60 -14.97 16 6 H 0.12 4.57 3.75 -2.91 -0.01 4.56 16 7 C 0.01 0.56 4.97 84.87 0.42 0.98 16 8 N -0.88 -40.75 11.34 21.64 0.25 -40.51 16 9 Si 0.98 33.09 29.60 68.60 2.03 35.12 16 10 H -0.24 -7.34 7.11 99.48 0.71 -6.64 16 11 H -0.28 -9.80 7.11 99.48 0.71 -9.09 16 12 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 13 C 0.47 21.98 8.33 260.63 2.17 24.15 16 14 N -0.43 -21.49 11.69 -58.67 -0.69 -22.18 16 15 N -0.05 -2.50 13.38 37.02 0.50 -2.00 16 16 N -0.15 -6.49 13.01 37.02 0.48 -6.01 16 17 N -0.42 -17.85 3.43 -349.57 -1.20 -19.05 16 18 C 0.14 4.74 4.74 86.38 0.41 5.15 16 19 C -0.13 -4.01 2.53 -9.81 -0.02 -4.04 16 20 H 0.08 2.63 6.66 -2.39 -0.02 2.62 16 21 C -0.14 -3.06 6.71 31.89 0.21 -2.85 16 22 C 0.04 0.91 7.72 72.66 0.56 1.47 16 23 O -0.39 -11.54 11.52 -148.98 -1.72 -13.25 16 24 C 0.06 1.84 7.19 72.35 0.52 2.36 16 25 H 0.25 6.06 7.80 -4.41 -0.03 6.03 16 26 H 0.13 5.83 5.43 -2.39 -0.01 5.82 16 27 H 0.07 3.30 7.88 -2.39 -0.02 3.28 16 28 H 0.28 12.20 8.31 -92.71 -0.77 11.43 16 29 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 30 H 0.12 4.28 5.65 -2.38 -0.01 4.27 16 31 H 0.10 1.88 7.87 -2.38 -0.02 1.86 16 32 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 2.77 6.68 -2.38 -0.02 2.75 16 Total: -1.00 -57.52 306.36 6.58 -50.94 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 1.11 Total: 28.00 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 7.20 Total: 9.04 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -2.04 Total: -109.85 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -1.72 Total: -13.25 kcal Atomic # 14 Polarization: 33.09 SS G_CDS: 2.03 Total: 35.12 kcal Total: -57.52 6.58 -50.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340343950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.271 kcal (2) G-P(sol) polarization free energy of solvation -57.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds