Wall clock time and date at job start Mon Mar 30 2020 01:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46949 * 149.92086 * 3 2 1 5 5 C 1.36934 * 119.99657 * 84.27594 * 4 3 2 6 6 H 1.07995 * 120.00174 * 333.43004 * 5 4 3 7 7 C 1.38801 * 119.99669 * 153.42815 * 5 4 3 8 8 N 1.31565 * 120.00158 * 352.36854 * 7 5 4 9 9 Si 1.86802 * 119.99719 * 172.36065 * 7 5 4 10 10 H 1.48493 * 109.47281 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46676 * 120.00739 * 9 7 5 12 12 H 1.48500 * 109.47359 * 240.00376 * 9 7 5 13 13 C 1.38218 * 120.00096 * 264.27715 * 4 3 2 14 14 N 1.31566 * 126.45387 * 267.33543 * 13 4 3 15 15 N 1.28426 * 110.49749 * 180.02562 * 14 13 4 16 16 N 1.28904 * 110.34880 * 359.97438 * 15 14 13 17 17 N 1.35431 * 126.46088 * 87.02627 * 13 4 3 18 18 C 1.46507 * 127.38495 * 359.95864 * 17 13 4 19 19 C 1.52991 * 109.46841 * 97.07341 * 18 17 13 20 20 H 1.09000 * 110.45860 * 51.34188 * 19 18 17 21 21 C 1.54512 * 110.50908 * 173.94271 * 19 18 17 22 22 C 1.54480 * 104.06131 * 118.64238 * 21 19 18 23 23 O 1.44420 * 104.80557 * 23.97989 * 22 21 19 24 24 C 1.44429 * 105.27337 * 319.48867 * 23 22 21 25 25 H 4.40640 * 5.51590 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47010 * 269.91944 * 3 2 1 27 27 H 1.09001 * 109.47360 * 29.92451 * 3 2 1 28 28 H 0.97002 * 119.99563 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.47064 * 217.07564 * 18 17 13 30 30 H 1.09003 * 109.46727 * 337.07055 * 18 17 13 31 31 H 1.08999 * 110.51611 * 237.28716 * 21 19 18 32 32 H 1.08999 * 110.51297 * 359.86533 * 21 19 18 33 33 H 1.09007 * 110.37185 * 142.80984 * 22 21 19 34 34 H 1.08994 * 110.37712 * 265.14860 * 22 21 19 35 35 H 1.08999 * 110.37123 * 281.67718 * 24 23 22 36 36 H 1.09007 * 110.36991 * 159.34492 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.1961 -0.6923 5 6 3.2499 2.3803 -0.0144 6 1 2.6226 2.5756 0.8427 7 6 4.1739 3.3294 -0.4290 8 7 5.0395 3.0355 -1.3752 9 14 4.1882 5.0242 0.3565 10 1 3.1225 5.1010 1.3877 11 1 5.5091 5.2643 0.9914 12 1 3.9451 6.0546 -0.6849 13 6 3.4766 1.1288 -2.0296 14 7 4.6742 0.8883 -2.5183 15 7 4.6459 0.8962 -3.8023 16 7 3.4513 1.1370 -4.2227 17 7 2.6421 1.2921 -3.0837 18 6 1.2047 1.5728 -3.0451 19 6 0.9742 3.0763 -3.2088 20 1 1.5075 3.4506 -4.0827 21 6 -0.5358 3.3832 -3.3236 22 6 -0.8282 4.2891 -2.1070 23 8 0.4436 4.8903 -1.7803 24 6 1.4153 3.8332 -1.9365 25 1 -1.0502 -0.0003 0.0000 26 1 3.0093 0.0023 1.0277 27 1 3.0097 -0.8898 -0.5127 28 1 5.6850 3.6990 -1.6651 29 1 0.7084 1.0387 -3.8554 30 1 0.7960 1.2443 -2.0895 31 1 -0.7487 3.9113 -4.2530 32 1 -1.1179 2.4634 -3.2661 33 1 -1.5543 5.0578 -2.3721 34 1 -1.1929 3.6942 -1.2697 35 1 1.3948 3.1683 -1.0730 36 1 2.4129 4.2516 -2.0705 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340343951.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:02 Heat of formation + Delta-G solvation = 145.177776 kcal Electronic energy + Delta-G solvation = -23037.619606 eV Core-core repulsion = 19755.049053 eV Total energy + Delta-G solvation = -3282.570553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.29624 -40.43042 -38.30977 -36.12599 -34.53240 -33.31268 -32.90163 -31.64847 -30.27492 -28.27228 -27.41937 -25.93692 -24.17328 -23.09305 -22.53293 -21.43495 -19.82378 -19.06225 -18.13521 -17.41951 -17.24493 -16.60979 -16.43316 -16.31256 -15.98866 -15.48884 -15.23379 -15.01151 -14.25431 -14.14121 -13.83013 -13.47516 -13.36153 -13.07302 -12.98694 -12.71107 -12.51282 -12.23551 -12.14878 -12.05061 -11.69839 -11.45217 -11.34883 -11.03867 -10.92562 -10.81480 -10.69461 -10.48539 -9.46288 -8.04114 -5.77719 0.49648 1.19380 1.37215 1.42656 1.47367 1.86150 2.05059 2.06532 2.37591 3.01514 3.13700 3.16145 3.44139 3.62341 3.69105 3.84109 3.96382 4.13182 4.32676 4.42372 4.44145 4.48000 4.67271 4.77819 4.83267 4.84717 4.94813 4.99403 5.07092 5.08969 5.14352 5.24665 5.48843 5.53937 5.88077 6.06408 6.81375 6.88582 7.42272 7.77490 8.12917 8.89468 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.011109 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.881832 B = 2519.961864 C = 3069.302464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.230 4.230 3 C 0.244 3.756 4 N -0.507 5.507 5 C -0.282 4.282 6 H 0.100 0.900 7 C -0.008 4.008 8 N -0.886 5.886 9 Si 0.942 3.058 10 H -0.253 1.253 11 H -0.288 1.288 12 H -0.301 1.301 13 C 0.540 3.460 14 N -0.313 5.313 15 N -0.086 5.086 16 N -0.143 5.143 17 N -0.395 5.395 18 C 0.134 3.866 19 C -0.133 4.133 20 H 0.061 0.939 21 C -0.131 4.131 22 C 0.036 3.964 23 O -0.409 6.409 24 C 0.058 3.942 25 H 0.251 0.749 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.251 0.749 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 -3.137 0.851 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.232 4.232 3 C 0.120 3.880 4 N -0.229 5.229 5 C -0.410 4.410 6 H 0.118 0.882 7 C -0.210 4.210 8 N -0.526 5.526 9 Si 0.769 3.231 10 H -0.176 1.176 11 H -0.215 1.215 12 H -0.229 1.229 13 C 0.177 3.823 14 N -0.169 5.169 15 N -0.083 5.083 16 N -0.130 5.130 17 N -0.199 5.199 18 C 0.011 3.989 19 C -0.153 4.153 20 H 0.080 0.920 21 C -0.169 4.169 22 C -0.040 4.040 23 O -0.328 6.328 24 C -0.018 4.018 25 H 0.268 0.732 26 H 0.124 0.876 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.724 -3.023 -0.149 15.032 hybrid contribution 0.005 1.361 0.602 1.488 sum -14.719 -1.662 0.453 14.820 Atomic orbital electron populations 1.25641 0.96406 0.98758 0.99668 1.24404 0.95802 1.01637 1.01343 1.18139 0.84024 0.86920 0.98884 1.40618 1.73953 1.09190 0.99165 1.19243 1.17053 0.92090 1.12627 0.88201 1.25737 0.95110 1.01860 0.98243 1.70226 1.18476 1.33657 1.30273 0.85623 0.78049 0.80897 0.78496 1.17618 1.21456 1.22861 1.21399 0.84803 0.90547 0.85520 1.74850 1.18891 1.22406 1.00756 1.77773 1.12663 1.12039 1.05786 1.82040 0.97978 1.25269 1.07682 1.52764 1.11075 1.50416 1.05628 1.22182 0.74859 0.95876 1.05944 1.22850 0.99351 0.94451 0.98627 0.92019 1.22932 0.91755 1.02107 1.00139 1.23693 0.86151 0.97479 0.96642 1.89080 1.18311 1.34942 1.90490 1.23689 0.91122 0.89346 0.97675 0.73249 0.87599 0.90485 0.93883 0.86455 0.86876 0.89020 0.86938 0.87053 0.90848 0.89518 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.19 18.41 74.32 1.37 -2.82 16 2 C -0.23 -6.72 12.18 31.13 0.38 -6.34 16 3 C 0.24 8.44 6.14 84.57 0.52 8.96 16 4 N -0.51 -22.15 2.55 -532.67 -1.36 -23.51 16 5 C -0.28 -13.22 6.68 84.03 0.56 -12.66 16 6 H 0.10 4.48 7.84 -2.91 -0.02 4.46 16 7 C -0.01 -0.40 3.91 84.87 0.33 -0.07 16 8 N -0.89 -50.39 10.09 21.65 0.22 -50.17 16 9 Si 0.94 43.27 28.84 68.60 1.98 45.25 16 10 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 12 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 13 C 0.54 25.58 5.85 260.63 1.53 27.10 16 14 N -0.31 -16.72 10.25 -58.68 -0.60 -17.32 16 15 N -0.09 -4.47 13.38 37.02 0.50 -3.97 16 16 N -0.14 -6.71 13.93 37.02 0.52 -6.19 16 17 N -0.39 -16.78 3.60 -349.59 -1.26 -18.04 16 18 C 0.13 4.23 5.68 86.38 0.49 4.72 16 19 C -0.13 -4.26 3.35 -9.78 -0.03 -4.29 16 20 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 21 C -0.13 -2.77 6.74 31.61 0.21 -2.56 16 22 C 0.04 0.85 7.63 72.49 0.55 1.41 16 23 O -0.41 -14.84 11.65 -148.98 -1.74 -16.58 16 24 C 0.06 2.29 6.07 72.48 0.44 2.73 16 25 H 0.25 3.17 7.80 -4.41 -0.03 3.13 16 26 H 0.11 3.41 8.09 -2.39 -0.02 3.39 16 27 H 0.08 2.58 8.00 -2.39 -0.02 2.56 16 28 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.11 3.37 5.29 -2.39 -0.01 3.36 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.11 1.63 7.73 -2.39 -0.02 1.61 16 33 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 3.56 5.30 -2.39 -0.01 3.54 16 36 H 0.04 2.17 6.31 -2.38 -0.02 2.16 16 Total: -1.00 -68.39 303.64 5.70 -62.69 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 1.10 Total: 11.66 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.35 Total: 16.19 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -1.99 Total: -119.21 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.74 Total: -16.58 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.98 Total: 45.25 kcal Total: -68.39 5.70 -62.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340343951.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.870 kcal (2) G-P(sol) polarization free energy of solvation -68.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds