Wall clock time and date at job start Mon Mar 30 2020 01:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47199 * 2 1 4 4 C 1.50705 * 109.47062 * 239.99999 * 2 1 3 5 5 H 1.07996 * 120.00297 * 240.00731 * 4 2 1 6 6 C 1.37884 * 119.99673 * 59.99627 * 4 2 1 7 7 N 1.31507 * 119.99997 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99739 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46923 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46882 * 120.00421 * 8 6 4 11 11 H 1.48489 * 109.47206 * 240.00328 * 8 6 4 12 12 C 1.50697 * 109.47112 * 120.00424 * 2 1 3 13 13 O 1.21278 * 120.00538 * 95.25205 * 12 2 1 14 14 N 1.34781 * 120.00014 * 275.24972 * 12 2 1 15 15 C 1.46919 * 120.63429 * 175.28565 * 14 12 2 16 16 C 1.53189 * 108.77568 * 233.63182 * 15 14 12 17 17 C 1.53039 * 109.31116 * 305.36128 * 16 15 14 18 18 O 1.42904 * 109.46409 * 301.34422 * 17 16 15 19 19 C 1.53002 * 109.46349 * 181.38432 * 17 16 15 20 20 F 1.39897 * 109.47251 * 180.02562 * 19 17 16 21 21 F 1.39894 * 109.47223 * 300.00105 * 19 17 16 22 22 C 1.53046 * 109.53940 * 61.36798 * 17 16 15 23 23 C 1.46928 * 120.62752 * 355.30303 * 14 12 2 24 24 H 1.08996 * 109.47235 * 184.89225 * 1 2 3 25 25 H 1.09004 * 109.46401 * 304.88824 * 1 2 3 26 26 H 1.08995 * 109.47231 * 64.88553 * 1 2 3 27 27 H 0.97005 * 119.99995 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.58890 * 113.83823 * 15 14 12 29 29 H 1.09004 * 109.58350 * 353.41204 * 15 14 12 30 30 H 1.08999 * 109.50008 * 65.31101 * 16 15 14 31 31 H 1.09003 * 109.50152 * 185.41522 * 16 15 14 32 32 H 0.96696 * 114.00229 * 179.97438 * 18 17 16 33 33 H 1.09007 * 109.46828 * 60.00066 * 19 17 16 34 34 H 1.08993 * 109.49748 * 58.58533 * 22 17 16 35 35 H 1.09004 * 109.49818 * 178.68793 * 22 17 16 36 36 H 1.09001 * 109.58851 * 6.58433 * 23 14 12 37 37 H 1.08995 * 109.58952 * 246.16120 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1473 -2.2862 -3.6038 10 1 1.1676 -1.5865 -4.8166 11 1 3.1470 -0.1858 -4.8161 12 6 2.0323 -0.7105 1.2304 13 8 2.3251 -1.8861 1.1748 14 7 2.1563 -0.0394 2.3927 15 6 2.5456 -0.7402 3.6239 16 6 1.5086 -0.4404 4.7108 17 6 1.3648 1.0750 4.8689 18 8 2.6318 1.6404 5.2114 19 6 0.3551 1.3784 5.9777 20 9 0.2231 2.7636 6.1219 21 9 -0.8852 0.8245 5.6433 22 6 0.8743 1.6827 3.5526 23 6 1.9042 1.4068 2.4526 24 1 -0.3633 -1.0239 0.0876 25 1 -0.3632 0.5878 0.8430 26 1 -0.3633 0.4361 -0.9305 27 1 0.7093 1.1618 -3.4844 28 1 3.5262 -0.3918 3.9482 29 1 2.5800 -1.8137 3.4380 30 1 0.5480 -0.8692 4.4254 31 1 1.8355 -0.8752 5.6554 32 1 2.6157 2.6003 5.3272 33 1 0.7048 0.9467 6.9156 34 1 -0.0802 1.2339 3.2782 35 1 0.7498 2.7589 3.6728 36 1 1.5155 1.7500 1.4938 37 1 2.8324 1.9304 2.6813 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347750496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:29 Heat of formation + Delta-G solvation = -215.913630 kcal Electronic energy + Delta-G solvation = -23035.580015 eV Core-core repulsion = 19254.369426 eV Total energy + Delta-G solvation = -3781.210589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.01645 -48.00912 -41.28033 -39.37725 -36.43352 -35.87154 -33.35521 -32.46998 -31.79892 -28.52100 -27.28388 -25.23146 -24.64814 -23.40619 -21.61897 -20.00654 -18.83143 -18.36078 -18.29035 -18.14589 -17.77108 -17.04303 -16.43612 -16.19195 -16.03182 -15.63728 -14.84710 -14.77663 -14.71063 -14.66388 -14.42045 -14.29325 -13.80581 -13.52381 -13.24697 -13.21856 -12.97892 -12.72352 -12.69600 -12.58994 -12.34702 -12.27064 -12.23444 -12.03451 -11.63414 -11.09807 -10.91561 -10.61083 -10.23075 -9.56601 -8.16631 -6.27405 1.38959 1.41136 1.54161 1.87447 2.16058 2.45322 2.63355 2.95623 3.12488 3.23166 3.28877 3.52466 3.88555 3.91567 4.11926 4.18206 4.28979 4.43586 4.48065 4.58289 4.67668 4.74306 4.80631 4.86035 4.93160 5.00653 5.02286 5.19455 5.41720 5.65644 5.71834 5.93399 6.18209 6.56311 6.62251 6.79027 7.36966 7.47730 8.89105 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.033205 B = 0.004670 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.043759 B = 5994.851959 C = 6273.518358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.028 3.972 3 H 0.045 0.955 4 C -0.528 4.528 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.271 1.271 12 C 0.521 3.479 13 O -0.590 6.590 14 N -0.618 5.618 15 C 0.116 3.884 16 C -0.115 4.115 17 C 0.103 3.897 18 O -0.539 6.539 19 C 0.239 3.761 20 F -0.208 7.208 21 F -0.211 7.211 22 C -0.160 4.160 23 C 0.113 3.887 24 H 0.017 0.983 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.266 0.734 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.397 0.603 33 H 0.150 0.850 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 6.053 19.120 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.007 3.993 3 H 0.063 0.937 4 C -0.566 4.566 5 H 0.060 0.940 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.196 1.196 12 C 0.312 3.688 13 O -0.470 6.470 14 N -0.352 5.352 15 C -0.006 4.006 16 C -0.153 4.153 17 C 0.060 3.940 18 O -0.347 6.347 19 C 0.185 3.815 20 F -0.189 7.189 21 F -0.192 7.192 22 C -0.199 4.199 23 C -0.009 4.009 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.248 0.752 33 H 0.167 0.833 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.405 4.966 18.920 19.566 hybrid contribution -0.131 0.160 -1.061 1.081 sum -0.536 5.127 17.859 18.589 Atomic orbital electron populations 1.21511 0.95398 0.98634 1.01926 1.18820 0.94898 0.96176 0.89450 0.93681 1.21257 1.31749 1.12380 0.91247 0.93955 1.25576 0.95132 0.95726 1.01349 1.69932 1.37051 1.23474 1.24363 0.85540 0.78370 0.78597 0.79366 1.20541 1.20015 1.19643 1.21656 0.75069 0.86749 0.85294 1.90489 1.52007 1.18934 1.85615 1.48288 1.69030 1.09680 1.08182 1.21438 0.98299 0.97672 0.83223 1.21885 1.00626 0.92080 1.00713 1.21962 0.84303 0.95714 0.91975 1.86604 1.27993 1.28294 1.91851 1.23008 0.81087 0.75300 1.02080 1.92961 1.96201 1.32739 1.96983 1.92975 1.46547 1.85268 1.94433 1.22576 0.99494 1.03237 0.94570 1.21748 0.99516 0.79662 1.00001 0.96393 0.93792 0.90596 0.92469 0.90224 0.91119 0.90256 0.86831 0.75165 0.83315 0.90960 0.87656 0.89784 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.92 71.98 0.64 -4.95 16 2 C 0.03 1.41 1.80 -12.28 -0.02 1.39 16 3 H 0.05 2.31 6.28 -2.39 -0.02 2.29 16 4 C -0.53 -30.94 8.33 25.60 0.21 -30.72 16 5 H 0.04 2.66 7.02 -2.91 -0.02 2.64 16 6 C 0.02 1.21 5.29 84.66 0.45 1.65 16 7 N -0.91 -50.86 11.29 21.45 0.24 -50.62 16 8 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 9 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 C 0.52 24.78 6.80 87.66 0.60 25.38 16 13 O -0.59 -32.38 15.24 -3.02 -0.05 -32.42 16 14 N -0.62 -22.11 2.97 -818.92 -2.43 -24.55 16 15 C 0.12 3.40 6.18 86.36 0.53 3.93 16 16 C -0.12 -2.42 4.97 30.67 0.15 -2.27 16 17 C 0.10 1.85 0.67 -10.76 -0.01 1.84 16 18 O -0.54 -8.38 11.71 -148.98 -1.74 -10.12 16 19 C 0.24 3.61 4.54 71.98 0.33 3.94 16 20 F -0.21 -3.42 16.41 44.97 0.74 -2.69 16 21 F -0.21 -4.34 16.35 44.97 0.74 -3.60 16 22 C -0.16 -3.53 4.84 30.68 0.15 -3.38 16 23 C 0.11 3.23 6.02 86.36 0.52 3.75 16 24 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.04 1.77 7.86 -2.38 -0.02 1.75 16 26 H 0.08 3.96 5.96 -2.39 -0.01 3.94 16 27 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 28 H 0.08 2.17 7.81 -2.39 -0.02 2.15 16 29 H 0.07 2.38 7.03 -2.39 -0.02 2.37 16 30 H 0.08 1.86 7.84 -2.39 -0.02 1.84 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.40 3.56 8.69 -74.06 -0.64 2.91 16 33 H 0.15 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.07 1.84 7.85 -2.39 -0.02 1.82 16 35 H 0.11 1.86 7.76 -2.38 -0.02 1.84 16 36 H 0.08 2.75 5.15 -2.39 -0.01 2.74 16 37 H 0.09 2.15 7.81 -2.39 -0.02 2.13 16 Total: -1.00 -70.49 303.01 3.53 -66.96 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.46 Total: 9.45 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 3.55 Total: 0.56 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -2.19 Total: -75.16 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -1.79 Total: -42.54 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 1.47 Total: -6.29 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -70.49 3.53 -66.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347750496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.953 kcal (2) G-P(sol) polarization free energy of solvation -70.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds