Wall clock time and date at job start Mon Mar 30 2020 01:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46860 * 2 1 4 4 C 1.50698 * 109.47251 * 120.00166 * 2 1 3 5 5 H 1.07992 * 120.00010 * 120.00201 * 4 2 1 6 6 C 1.37882 * 120.00043 * 300.00222 * 4 2 1 7 7 N 1.31517 * 119.99663 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00071 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47102 * 90.00011 * 8 6 4 10 10 H 1.48500 * 109.47230 * 210.00244 * 8 6 4 11 11 H 1.48502 * 109.47232 * 329.99987 * 8 6 4 12 12 C 1.50700 * 109.47340 * 240.00524 * 2 1 3 13 13 O 1.21286 * 119.99699 * 264.37447 * 12 2 1 14 14 N 1.34776 * 120.00226 * 84.36777 * 12 2 1 15 15 C 1.46924 * 120.62901 * 175.34494 * 14 12 2 16 16 C 1.53188 * 108.77855 * 233.58942 * 15 14 12 17 17 C 1.53045 * 109.31222 * 305.36779 * 16 15 14 18 18 O 1.42895 * 109.45983 * 301.35582 * 17 16 15 19 19 C 1.53002 * 109.46020 * 181.38201 * 17 16 15 20 20 F 1.39903 * 109.47230 * 180.02562 * 19 17 16 21 21 F 1.39903 * 109.46944 * 300.00004 * 19 17 16 22 22 C 1.53045 * 109.53555 * 61.36429 * 17 16 15 23 23 C 1.46918 * 120.63094 * 355.32910 * 14 12 2 24 24 H 1.09004 * 109.47295 * 66.29964 * 1 2 3 25 25 H 1.09003 * 109.46916 * 186.29493 * 1 2 3 26 26 H 1.08997 * 109.47221 * 306.29967 * 1 2 3 27 27 H 0.97001 * 119.99841 * 180.02562 * 7 6 4 28 28 H 1.09006 * 109.58224 * 113.80311 * 15 14 12 29 29 H 1.08994 * 109.59025 * 353.38038 * 15 14 12 30 30 H 1.08998 * 109.50438 * 185.41867 * 16 15 14 31 31 H 1.09001 * 109.49929 * 65.31639 * 16 15 14 32 32 H 0.96704 * 113.99615 * 180.02562 * 18 17 16 33 33 H 1.08996 * 109.47020 * 60.00007 * 19 17 16 34 34 H 1.09000 * 109.49888 * 58.59041 * 22 17 16 35 35 H 1.08997 * 109.49615 * 178.68030 * 22 17 16 36 36 H 1.08999 * 109.59104 * 246.19996 * 23 14 12 37 37 H 1.09003 * 109.58949 * 6.62690 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2305 13 8 2.3316 -1.8843 -1.1733 14 7 2.1491 -0.0410 -2.3945 15 6 2.7322 -0.6907 -3.5763 16 6 3.8720 0.1840 -4.1078 17 6 3.3475 1.5989 -4.3629 18 8 2.2724 1.5458 -5.3028 19 6 4.4748 2.4665 -4.9264 20 9 3.9957 3.7602 -5.1592 21 9 5.5277 2.5181 -4.0067 22 6 2.8467 2.2037 -3.0493 23 6 1.6952 1.3518 -2.5059 24 1 -0.3634 0.4131 -0.9410 25 1 -0.3633 -1.0215 0.1127 26 1 -0.3633 0.6084 0.8282 27 1 0.7095 1.1617 3.4844 28 1 1.9683 -0.8028 -4.3458 29 1 3.1218 -1.6704 -3.2998 30 1 4.2501 -0.2373 -5.0393 31 1 4.6756 0.2210 -3.3722 32 1 1.8905 2.4091 -5.5126 33 1 4.8308 2.0366 -5.8626 34 1 3.6599 2.2217 -2.3237 35 1 2.4949 3.2199 -3.2274 36 1 0.8468 1.4064 -3.1881 37 1 1.4007 1.7199 -1.5231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347750497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:31 Heat of formation + Delta-G solvation = -216.639421 kcal Electronic energy + Delta-G solvation = -23007.581568 eV Core-core repulsion = 19226.339507 eV Total energy + Delta-G solvation = -3781.242062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.02217 -48.01673 -41.27666 -39.38099 -36.43114 -35.85581 -33.37839 -32.44563 -31.80828 -28.51621 -27.27525 -25.25316 -24.62956 -23.42208 -21.54950 -20.08065 -18.80995 -18.40475 -18.32078 -18.15571 -17.73883 -16.99431 -16.40919 -16.30680 -15.94201 -15.61216 -14.94371 -14.78959 -14.66684 -14.51883 -14.38702 -14.37385 -13.89705 -13.58194 -13.22478 -13.17062 -12.95462 -12.74065 -12.67868 -12.61645 -12.38426 -12.28717 -12.18277 -12.05130 -11.63544 -11.07819 -10.93755 -10.60951 -10.24049 -9.56283 -8.17193 -6.26964 1.39457 1.40566 1.52271 1.87774 2.16248 2.44982 2.62956 2.94945 3.12867 3.22500 3.28331 3.52104 3.88486 3.91192 4.11797 4.17322 4.29134 4.42454 4.48331 4.59709 4.68144 4.74549 4.80499 4.86586 4.94066 4.97807 5.02002 5.19692 5.43935 5.65971 5.73360 5.90897 6.16874 6.56361 6.62205 6.78918 7.37168 7.47934 8.89205 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.026403 B = 0.004861 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.231629 B = 5758.577669 C = 5933.573575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.029 3.971 3 H 0.044 0.956 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.521 3.479 13 O -0.590 6.590 14 N -0.618 5.618 15 C 0.116 3.884 16 C -0.116 4.116 17 C 0.104 3.896 18 O -0.537 6.537 19 C 0.238 3.762 20 F -0.207 7.207 21 F -0.212 7.212 22 C -0.163 4.163 23 C 0.114 3.886 24 H 0.045 0.955 25 H 0.018 0.982 26 H 0.073 0.927 27 H 0.266 0.734 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.398 0.602 33 H 0.151 0.849 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 7.232 -18.117 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.008 3.992 3 H 0.061 0.939 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.205 1.205 12 C 0.312 3.688 13 O -0.470 6.470 14 N -0.352 5.352 15 C -0.006 4.006 16 C -0.154 4.154 17 C 0.062 3.938 18 O -0.346 6.346 19 C 0.184 3.816 20 F -0.189 7.189 21 F -0.194 7.194 22 C -0.201 4.201 23 C -0.009 4.009 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.094 0.906 32 H 0.249 0.751 33 H 0.168 0.832 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.974 6.140 -17.919 19.355 hybrid contribution 0.253 0.258 1.193 1.247 sum 4.227 6.398 -16.726 18.400 Atomic orbital electron populations 1.21514 0.95275 0.99774 1.00682 1.18798 0.95026 0.95970 0.89424 0.93872 1.21215 1.31947 1.12404 0.91250 0.93942 1.25574 0.95109 0.95727 1.01330 1.69946 1.37002 1.23455 1.24399 0.85605 0.78505 0.78725 0.79125 1.19757 1.19849 1.20542 1.21660 0.75397 0.86666 0.85079 1.90491 1.52230 1.18591 1.85734 1.48290 1.62302 1.14264 1.10342 1.21442 0.95994 0.96306 0.86841 1.21890 0.97814 0.92357 1.03379 1.21931 0.87009 0.95839 0.89037 1.86600 1.49050 1.36829 1.62094 1.23031 0.84625 0.80240 0.93662 1.92961 1.88745 1.41998 1.95162 1.92979 1.59505 1.96550 1.70317 1.22581 0.99707 1.00697 0.97130 1.21757 0.96801 0.79500 1.02794 0.93595 0.96313 0.90871 0.92499 0.89866 0.91184 0.86754 0.90587 0.75131 0.83238 0.91474 0.87612 0.89106 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.44 8.62 71.98 0.62 -4.82 16 2 C 0.03 1.48 1.77 -12.29 -0.02 1.45 16 3 H 0.04 2.22 6.51 -2.39 -0.02 2.21 16 4 C -0.53 -31.10 8.33 25.60 0.21 -30.88 16 5 H 0.04 2.67 7.01 -2.91 -0.02 2.65 16 6 C 0.02 1.25 5.30 84.66 0.45 1.69 16 7 N -0.91 -51.02 11.39 21.45 0.24 -50.77 16 8 Si 0.95 45.15 29.54 68.60 2.03 47.17 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 12 C 0.52 24.73 6.80 87.66 0.60 25.32 16 13 O -0.59 -32.35 15.23 -3.05 -0.05 -32.39 16 14 N -0.62 -22.04 2.97 -818.93 -2.43 -24.48 16 15 C 0.12 3.40 6.18 86.36 0.53 3.94 16 16 C -0.12 -2.52 4.97 30.67 0.15 -2.37 16 17 C 0.10 1.92 0.67 -10.76 -0.01 1.91 16 18 O -0.54 -8.20 11.70 -148.98 -1.74 -9.95 16 19 C 0.24 3.75 4.54 71.98 0.33 4.08 16 20 F -0.21 -3.52 16.41 44.97 0.74 -2.78 16 21 F -0.21 -4.62 16.35 44.97 0.74 -3.88 16 22 C -0.16 -3.70 4.84 30.67 0.15 -3.56 16 23 C 0.11 3.22 5.53 86.36 0.48 3.70 16 24 H 0.05 1.81 7.39 -2.38 -0.02 1.79 16 25 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 3.73 6.27 -2.39 -0.01 3.71 16 27 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 28 H 0.08 2.20 7.81 -2.38 -0.02 2.18 16 29 H 0.07 2.37 7.03 -2.39 -0.02 2.35 16 30 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.88 7.84 -2.39 -0.02 1.87 16 32 H 0.40 3.42 8.69 -74.05 -0.64 2.78 16 33 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.84 7.85 -2.39 -0.02 1.82 16 35 H 0.11 1.92 7.76 -2.39 -0.02 1.91 16 36 H 0.09 2.17 7.81 -2.39 -0.02 2.15 16 37 H 0.08 2.72 5.15 -2.39 -0.01 2.71 16 Total: -1.00 -70.77 302.34 3.47 -67.30 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.46 Total: 9.30 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 3.49 Total: 0.47 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -2.19 Total: -75.25 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -1.79 Total: -42.34 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 1.47 Total: -6.67 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.77 3.47 -67.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347750497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.336 kcal (2) G-P(sol) polarization free energy of solvation -70.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds