Wall clock time and date at job start Mon Mar 30 2020 01:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47065 * 2 1 4 4 C 1.50704 * 109.47064 * 119.99364 * 2 1 3 5 5 H 1.08003 * 119.99564 * 114.37125 * 4 2 1 6 6 C 1.37876 * 120.00516 * 294.37680 * 4 2 1 7 7 N 1.31513 * 120.00131 * 156.77937 * 6 4 2 8 8 Si 1.86808 * 119.99686 * 336.78286 * 6 4 2 9 9 H 1.48500 * 109.46877 * 180.02562 * 8 6 4 10 10 H 1.48494 * 109.46836 * 299.99936 * 8 6 4 11 11 H 1.48495 * 109.46999 * 59.99829 * 8 6 4 12 12 C 1.50693 * 109.47327 * 239.99850 * 2 1 3 13 13 O 1.21280 * 119.99894 * 239.99745 * 12 2 1 14 14 N 1.34778 * 119.99983 * 59.99888 * 12 2 1 15 15 C 1.47060 * 136.05762 * 359.63027 * 14 12 2 16 16 C 1.53753 * 87.88831 * 152.96383 * 15 14 12 17 17 C 1.50702 * 114.09015 * 139.77948 * 16 15 14 18 18 C 1.38243 * 119.97240 * 326.29216 * 17 16 15 19 19 C 1.38201 * 120.02282 * 179.72571 * 18 17 16 20 20 C 1.38454 * 119.97746 * 0.56315 * 19 18 17 21 21 F 1.35100 * 120.03055 * 179.68550 * 20 19 18 22 22 C 1.38463 * 119.94613 * 359.70742 * 20 19 18 23 23 C 1.38200 * 119.97478 * 0.02562 * 22 20 19 24 24 C 1.47070 * 136.05631 * 180.02562 * 14 12 2 25 25 H 1.08999 * 109.46572 * 172.87910 * 1 2 3 26 26 H 1.08999 * 109.47370 * 292.88062 * 1 2 3 27 27 H 1.09002 * 109.46773 * 52.88137 * 1 2 3 28 28 H 0.96995 * 119.99733 * 354.93593 * 7 6 4 29 29 H 1.09005 * 113.46869 * 267.69625 * 15 14 12 30 30 H 1.09003 * 113.46998 * 38.13381 * 15 14 12 31 31 H 1.08999 * 114.57791 * 272.66307 * 16 15 14 32 32 H 1.08004 * 119.98989 * 359.97167 * 18 17 16 33 33 H 1.08002 * 120.01155 * 180.25229 * 19 18 17 34 34 H 1.08001 * 120.01172 * 179.97438 * 22 20 19 35 35 H 1.07996 * 119.98855 * 180.02562 * 23 22 20 36 36 H 1.09003 * 113.46222 * 321.86152 * 24 14 12 37 37 H 1.08995 * 113.46491 * 92.30243 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.5763 -1.6384 1.1341 6 6 1.7976 -0.1755 2.4795 7 7 1.8058 -0.9532 3.5400 8 14 1.4677 1.6539 2.6652 9 1 1.2484 1.9742 4.0985 10 1 2.6345 2.4209 2.1600 11 1 0.2588 2.0205 1.8848 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6964 -1.1190 14 7 1.7068 -0.2500 -2.4545 15 6 0.9105 0.8647 -2.9893 16 6 1.8016 0.8257 -4.2417 17 6 1.0542 1.0264 -5.5349 18 6 -0.2364 0.5493 -5.6679 19 6 -0.9248 0.7378 -6.8513 20 6 -0.3172 1.3945 -7.9080 21 9 -0.9869 1.5737 -9.0676 22 6 0.9776 1.8670 -7.7755 23 6 1.6620 1.6822 -6.5892 24 6 1.9858 -0.6453 -3.8433 25 1 -0.3632 -1.0198 -0.1274 26 1 -0.3634 0.3996 0.9468 27 1 -0.3633 0.6202 -0.8195 28 1 1.9037 -1.9127 3.4370 29 1 -0.1283 0.6003 -3.1873 30 1 1.0093 1.7846 -2.4129 31 1 2.7092 1.4252 -4.1712 32 1 -0.7085 0.0326 -4.8452 33 1 -1.9346 0.3686 -6.9536 34 1 1.4527 2.3790 -8.5993 35 1 2.6717 2.0510 -6.4855 36 1 3.0011 -1.0122 -3.9945 37 1 1.2304 -1.3075 -4.2662 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347794549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:26 Heat of formation + Delta-G solvation = -21.300767 kcal Electronic energy + Delta-G solvation = -20707.477313 eV Core-core repulsion = 17365.474996 eV Total energy + Delta-G solvation = -3342.002317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.15854 -40.67614 -38.85532 -37.16614 -33.79207 -31.91107 -31.47171 -31.02597 -28.02390 -25.97564 -24.86329 -23.99022 -23.24983 -21.85724 -20.27769 -18.55431 -17.95094 -17.37357 -16.75394 -16.30222 -16.09801 -15.86293 -15.21875 -14.97097 -14.04846 -13.93670 -13.81693 -13.71918 -13.42261 -13.01318 -12.71339 -12.67221 -12.38933 -12.28028 -11.76415 -11.55253 -11.47479 -11.25057 -11.01940 -10.78961 -10.51712 -10.23181 -9.86847 -9.42452 -8.96429 -8.79633 -8.78397 -8.30539 -8.16961 -6.48315 -4.03837 0.79644 0.91645 3.20464 3.24024 3.34385 3.40826 3.49540 3.59858 3.96735 4.34072 4.44989 4.49151 4.50719 4.58551 4.82593 4.93978 4.95764 5.18983 5.22054 5.35356 5.47133 5.52241 5.61341 5.69562 5.75124 5.80829 5.90818 6.01163 6.17387 6.23773 6.27263 6.43789 6.55829 6.57128 6.92175 7.21297 7.86994 8.27949 8.46829 9.02547 9.05452 9.62139 10.91295 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035447 B = 0.003556 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.716830 B = 7871.230097 C = 8121.960348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.013 3.987 3 H 0.043 0.957 4 C -0.598 4.598 5 H 0.075 0.925 6 C 0.037 3.963 7 N -0.896 5.896 8 Si 1.034 2.966 9 H -0.283 1.283 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.557 3.443 13 O -0.532 6.532 14 N -0.657 5.657 15 C 0.110 3.890 16 C -0.092 4.092 17 C -0.076 4.076 18 C -0.087 4.087 19 C -0.149 4.149 20 C 0.091 3.909 21 F -0.143 7.143 22 C -0.152 4.152 23 C -0.082 4.082 24 C 0.110 3.890 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.271 0.729 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.076 0.924 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 8.234 -22.628 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.009 4.009 3 H 0.060 0.940 4 C -0.636 4.636 5 H 0.093 0.907 6 C -0.169 4.169 7 N -0.529 5.529 8 Si 0.862 3.138 9 H -0.209 1.209 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.349 3.651 13 O -0.406 6.406 14 N -0.396 5.396 15 C -0.013 4.013 16 C -0.111 4.111 17 C -0.076 4.076 18 C -0.105 4.105 19 C -0.168 4.168 20 C 0.072 3.928 21 F -0.121 7.121 22 C -0.171 4.171 23 C -0.100 4.100 24 C -0.013 4.013 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.094 0.906 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.803 8.759 -21.180 23.417 hybrid contribution 0.044 -1.177 -1.479 1.890 sum -4.758 7.582 -22.659 24.363 Atomic orbital electron populations 1.22115 0.97042 1.00238 1.00301 1.19115 0.93603 0.96728 0.91419 0.93964 1.21907 1.40614 1.11503 0.89566 0.90679 1.25700 0.93538 1.05672 0.91972 1.70817 1.43753 1.06560 1.31793 0.84192 0.77059 0.76208 0.76386 1.20868 1.20935 1.20304 1.21266 0.78367 0.83642 0.81803 1.90579 1.38086 1.26633 1.85268 1.49980 1.53168 1.31976 1.04505 1.23059 0.95482 0.91580 0.91209 1.22087 0.99550 0.98609 0.90820 1.19682 0.94380 0.98386 0.95193 1.20995 0.93956 0.98459 0.97060 1.21147 1.01357 1.01354 0.92963 1.17757 0.91459 1.01090 0.82517 1.91497 1.80270 1.93618 1.46753 1.21142 0.93543 1.02818 0.99607 1.20935 0.99989 0.97474 0.91632 1.22880 1.02060 0.94417 0.81983 0.93594 0.92032 0.95405 0.91883 0.89938 0.89983 0.86734 0.84614 0.84683 0.84771 0.84779 0.90574 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.71 37.16 0.32 -2.59 16 2 C 0.01 0.31 2.11 -92.92 -0.20 0.12 16 3 H 0.04 0.97 6.72 -51.93 -0.35 0.62 16 4 C -0.60 -17.44 8.57 -34.44 -0.30 -17.74 16 5 H 0.08 2.49 7.02 -52.48 -0.37 2.12 16 6 C 0.04 1.07 5.19 -17.82 -0.09 0.98 16 7 N -0.90 -27.69 13.70 55.43 0.76 -26.93 16 8 Si 1.03 24.37 26.45 -169.99 -4.50 19.88 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -5.86 6.16 56.52 0.35 -5.51 16 12 C 0.56 12.77 7.39 -10.99 -0.08 12.69 16 13 O -0.53 -14.46 16.24 5.56 0.09 -14.37 16 14 N -0.66 -11.13 3.64 -185.06 -0.67 -11.81 16 15 C 0.11 1.33 6.21 -8.38 -0.05 1.28 16 16 C -0.09 -0.91 4.35 -91.11 -0.40 -1.31 16 17 C -0.08 -0.65 5.35 -104.62 -0.56 -1.21 16 18 C -0.09 -0.73 8.68 -39.59 -0.34 -1.08 16 19 C -0.15 -1.26 10.03 -39.52 -0.40 -1.66 16 20 C 0.09 0.83 7.30 -39.42 -0.29 0.54 16 21 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 22 C -0.15 -1.22 10.03 -39.51 -0.40 -1.61 16 23 C -0.08 -0.64 9.71 -39.59 -0.38 -1.02 16 24 C 0.11 1.42 8.09 -8.50 -0.07 1.35 16 25 H 0.04 0.98 8.13 -51.93 -0.42 0.56 16 26 H 0.06 1.34 5.49 -51.93 -0.28 1.06 16 27 H 0.03 0.46 6.60 -51.93 -0.34 0.12 16 28 H 0.27 8.44 8.73 -40.82 -0.36 8.09 16 29 H 0.08 0.85 6.17 -51.93 -0.32 0.53 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.11 1.05 8.11 -51.93 -0.42 0.63 16 32 H 0.14 1.04 6.46 -52.48 -0.34 0.70 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.91 7.74 -51.93 -0.40 0.50 16 LS Contribution 311.02 15.07 4.69 4.69 Total: -1.00 -34.28 311.02 -7.39 -41.67 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.57 Total: -0.48 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -3.23 Total: -11.25 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.09 Total: -38.73 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.09 Total: -14.37 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.50 Total: 19.88 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.28 -7.39 -41.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347794549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.368 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds