Wall clock time and date at job start Mon Mar 30 2020 01:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.47167 * 2 1 4 4 C 1.50702 * 109.47656 * 239.99999 * 2 1 3 5 5 H 1.07989 * 120.00305 * 240.00260 * 4 2 1 6 6 C 1.37878 * 119.99586 * 59.99626 * 4 2 1 7 7 N 1.31517 * 120.00408 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00014 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47399 * 89.99834 * 8 6 4 10 10 H 1.48505 * 109.47437 * 210.00240 * 8 6 4 11 11 H 1.48508 * 109.47070 * 330.00269 * 8 6 4 12 12 C 1.50699 * 109.47253 * 120.00068 * 2 1 3 13 13 O 1.21284 * 120.00417 * 120.00357 * 12 2 1 14 14 N 1.34780 * 119.99668 * 300.00043 * 12 2 1 15 15 C 1.47583 * 134.48847 * 179.97438 * 14 12 2 16 16 C 1.53947 * 86.11463 * 155.36171 * 15 14 12 17 17 C 1.50700 * 113.74156 * 137.95167 * 16 15 14 18 18 C 1.38244 * 119.97499 * 299.73049 * 17 16 15 19 19 C 1.38199 * 120.02733 * 179.72621 * 18 17 16 20 20 C 1.38467 * 119.97284 * 0.56721 * 19 18 17 21 21 F 1.35098 * 120.02629 * 179.68277 * 20 19 18 22 22 C 1.38459 * 119.94568 * 359.70328 * 20 19 18 23 23 C 1.38203 * 119.97756 * 0.02562 * 22 20 19 24 24 C 1.47573 * 134.49478 * 0.02562 * 14 12 2 25 25 H 1.08999 * 109.46629 * 59.99807 * 1 2 3 26 26 H 1.09005 * 109.46814 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47222 * 299.99635 * 1 2 3 28 28 H 0.96994 * 119.99980 * 179.97438 * 7 6 4 29 29 H 1.08996 * 113.77114 * 41.06515 * 15 14 12 30 30 H 1.08993 * 113.87279 * 269.67669 * 15 14 12 31 31 H 1.08999 * 113.74208 * 269.26384 * 16 15 14 32 32 H 1.08005 * 119.98753 * 359.97436 * 18 17 16 33 33 H 1.08000 * 120.01901 * 180.25157 * 19 18 17 34 34 H 1.07996 * 120.01473 * 179.97438 * 22 20 19 35 35 H 1.07997 * 119.98846 * 180.02562 * 23 22 20 36 36 H 1.09003 * 113.77162 * 90.33892 * 24 14 12 37 37 H 1.09004 * 113.77283 * 318.93865 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.3430 -2.1617 -4.4119 10 1 2.4867 -0.1412 -5.1123 11 1 3.6295 -1.7582 -3.7122 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4545 15 6 2.0086 -0.6776 3.8344 16 6 1.7569 0.7882 4.2322 17 6 0.9626 0.9441 5.5034 18 6 -0.3150 0.4229 5.5878 19 6 -1.0422 0.5604 6.7549 20 6 -0.4951 1.2306 7.8360 21 9 -1.2075 1.3712 8.9752 22 6 0.7825 1.7571 7.7483 23 6 1.5099 1.6135 6.5820 24 6 0.9045 0.8838 2.9534 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.7095 1.1617 -3.4844 29 1 3.0394 -1.0010 3.9786 30 1 1.2817 -1.3762 4.2487 31 1 2.6527 1.4088 4.2105 32 1 -0.7436 -0.0954 4.7427 33 1 -2.0388 0.1496 6.8221 34 1 1.2101 2.2804 8.5907 35 1 2.5066 2.0237 6.5136 36 1 -0.1475 0.6435 3.1077 37 1 1.0534 1.8074 2.3939 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347794552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:28 Heat of formation + Delta-G solvation = -25.688358 kcal Electronic energy + Delta-G solvation = -20662.462785 eV Core-core repulsion = 17320.270208 eV Total energy + Delta-G solvation = -3342.192577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.09892 -40.45751 -38.71727 -36.93842 -33.73987 -31.73442 -31.39318 -30.47384 -27.77883 -26.04995 -25.10399 -23.86342 -23.16759 -21.93585 -20.17017 -18.51217 -17.88802 -16.73557 -16.29991 -16.13992 -15.88463 -15.78598 -15.15042 -14.86807 -14.23109 -13.83437 -13.80910 -13.65514 -13.23691 -12.90337 -12.66040 -12.41120 -12.28456 -12.09713 -11.46345 -11.35868 -11.13003 -11.04695 -10.93249 -10.69799 -10.58225 -10.27600 -9.96447 -9.35299 -8.97428 -8.72985 -8.61687 -8.34518 -8.13807 -6.03895 -4.07176 0.87217 0.98772 3.28916 3.33400 3.33748 3.39277 3.47948 3.67617 4.03422 4.43500 4.45696 4.58690 4.59432 4.65329 4.93855 5.02179 5.07550 5.28278 5.31770 5.49769 5.60887 5.64192 5.73509 5.77454 5.87394 5.87892 5.98920 6.12776 6.36361 6.49868 6.64080 6.67220 6.85183 6.95337 7.48380 7.75127 8.01214 8.18456 8.44137 9.01611 9.20048 9.58345 11.03718 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.045277 B = 0.003290 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.270307 B = 8507.826096 C = 8750.189403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.036 3.964 3 H 0.051 0.949 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.543 3.457 13 O -0.543 6.543 14 N -0.654 5.654 15 C 0.112 3.888 16 C -0.090 4.090 17 C -0.077 4.077 18 C -0.086 4.086 19 C -0.150 4.150 20 C 0.090 3.910 21 F -0.143 7.143 22 C -0.153 4.153 23 C -0.083 4.083 24 C 0.116 3.884 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.014 0.986 28 H 0.261 0.739 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.264 4.278 19.632 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.015 3.985 3 H 0.069 0.931 4 C -0.541 4.541 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.336 3.664 13 O -0.419 6.419 14 N -0.393 5.393 15 C -0.011 4.011 16 C -0.108 4.108 17 C -0.078 4.078 18 C -0.104 4.104 19 C -0.168 4.168 20 C 0.071 3.929 21 F -0.122 7.122 22 C -0.172 4.172 23 C -0.101 4.101 24 C -0.007 4.007 25 H 0.111 0.889 26 H 0.048 0.952 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.100 0.900 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.914 3.760 19.213 19.793 hybrid contribution 0.005 -0.354 -0.521 0.630 sum -2.909 3.406 18.693 19.222 Atomic orbital electron populations 1.21759 0.96528 0.99720 1.01012 1.18818 0.94152 0.96744 0.88744 0.93100 1.21164 1.31045 1.12841 0.89022 0.90826 1.24945 0.95104 0.95051 0.99091 1.69870 1.37148 1.23049 1.23549 0.86448 0.79484 0.79254 0.82014 1.20649 1.21258 1.19723 1.21864 0.78153 0.83646 0.82725 1.90545 1.38621 1.27014 1.85674 1.50291 1.53214 1.31297 1.04465 1.23045 1.01733 0.94294 0.82031 1.22264 0.99128 0.98545 0.90909 1.19790 0.94575 0.98102 0.95354 1.21000 0.93682 0.98395 0.97274 1.21150 1.01509 1.01387 0.92793 1.17755 0.91059 1.01108 0.83007 1.91492 1.78007 1.94163 1.48539 1.21130 0.93539 1.02658 0.99843 1.20946 0.99888 0.97630 0.91668 1.23187 0.95484 0.91290 0.90764 0.88868 0.95190 0.96693 0.92947 0.90379 0.90505 0.87126 0.84591 0.84717 0.84841 0.84830 0.89999 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.85 37.16 0.33 -2.72 16 2 C 0.04 0.92 2.47 -92.92 -0.23 0.69 16 3 H 0.05 1.33 8.14 -51.92 -0.42 0.90 16 4 C -0.50 -14.41 8.37 -34.44 -0.29 -14.70 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.54 12.72 7.38 -10.98 -0.08 12.64 16 13 O -0.54 -14.66 16.19 5.55 0.09 -14.57 16 14 N -0.65 -11.53 3.57 -178.41 -0.64 -12.16 16 15 C 0.11 1.51 8.30 -2.97 -0.02 1.49 16 16 C -0.09 -0.96 4.17 -90.83 -0.38 -1.34 16 17 C -0.08 -0.73 5.30 -104.62 -0.55 -1.28 16 18 C -0.09 -0.79 8.64 -39.59 -0.34 -1.13 16 19 C -0.15 -1.36 10.03 -39.51 -0.40 -1.76 16 20 C 0.09 0.87 7.30 -39.42 -0.29 0.59 16 21 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 22 C -0.15 -1.31 10.03 -39.51 -0.40 -1.70 16 23 C -0.08 -0.69 9.71 -39.59 -0.38 -1.08 16 24 C 0.12 1.53 6.25 -2.96 -0.02 1.51 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.01 0.28 6.13 -51.93 -0.32 -0.04 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 31 H 0.11 1.09 8.10 -51.93 -0.42 0.67 16 32 H 0.14 1.18 6.62 -52.48 -0.35 0.84 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.08 0.96 6.11 -51.93 -0.32 0.64 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 313.88 15.07 4.73 4.73 Total: -1.00 -32.29 313.88 -7.89 -40.18 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.57 Total: -1.77 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -3.15 Total: -7.25 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.01 Total: -36.71 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.09 Total: -14.57 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.29 -7.89 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347794552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.491 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds