Wall clock time and date at job start Mon Mar 30 2020 01:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.47167 * 2 1 4 4 C 1.50702 * 109.47656 * 239.99999 * 2 1 3 5 5 H 1.07989 * 120.00305 * 240.00260 * 4 2 1 6 6 C 1.37878 * 119.99586 * 59.99626 * 4 2 1 7 7 N 1.31517 * 120.00408 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00014 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47399 * 89.99834 * 8 6 4 10 10 H 1.48505 * 109.47437 * 210.00240 * 8 6 4 11 11 H 1.48508 * 109.47070 * 330.00269 * 8 6 4 12 12 C 1.50699 * 109.47253 * 120.00068 * 2 1 3 13 13 O 1.21284 * 120.00417 * 120.00357 * 12 2 1 14 14 N 1.34780 * 119.99668 * 300.00043 * 12 2 1 15 15 C 1.47583 * 134.48847 * 179.97438 * 14 12 2 16 16 C 1.53947 * 86.11463 * 155.36171 * 15 14 12 17 17 C 1.50700 * 113.74156 * 137.95167 * 16 15 14 18 18 C 1.38244 * 119.97499 * 299.73049 * 17 16 15 19 19 C 1.38199 * 120.02733 * 179.72621 * 18 17 16 20 20 C 1.38467 * 119.97284 * 0.56721 * 19 18 17 21 21 F 1.35098 * 120.02629 * 179.68277 * 20 19 18 22 22 C 1.38459 * 119.94568 * 359.70328 * 20 19 18 23 23 C 1.38203 * 119.97756 * 0.02562 * 22 20 19 24 24 C 1.47573 * 134.49478 * 0.02562 * 14 12 2 25 25 H 1.08999 * 109.46629 * 59.99807 * 1 2 3 26 26 H 1.09005 * 109.46814 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47222 * 299.99635 * 1 2 3 28 28 H 0.96994 * 119.99980 * 179.97438 * 7 6 4 29 29 H 1.08996 * 113.77114 * 41.06515 * 15 14 12 30 30 H 1.08993 * 113.87279 * 269.67669 * 15 14 12 31 31 H 1.08999 * 113.74208 * 269.26384 * 16 15 14 32 32 H 1.08005 * 119.98753 * 359.97436 * 18 17 16 33 33 H 1.08000 * 120.01901 * 180.25157 * 19 18 17 34 34 H 1.07996 * 120.01473 * 179.97438 * 22 20 19 35 35 H 1.07997 * 119.98846 * 180.02562 * 23 22 20 36 36 H 1.09003 * 113.77162 * 90.33892 * 24 14 12 37 37 H 1.09004 * 113.77283 * 318.93865 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.3430 -2.1617 -4.4119 10 1 2.4867 -0.1412 -5.1123 11 1 3.6295 -1.7582 -3.7122 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4545 15 6 2.0086 -0.6776 3.8344 16 6 1.7569 0.7882 4.2322 17 6 0.9626 0.9441 5.5034 18 6 -0.3150 0.4229 5.5878 19 6 -1.0422 0.5604 6.7549 20 6 -0.4951 1.2306 7.8360 21 9 -1.2075 1.3712 8.9752 22 6 0.7825 1.7571 7.7483 23 6 1.5099 1.6135 6.5820 24 6 0.9045 0.8838 2.9534 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.7095 1.1617 -3.4844 29 1 3.0394 -1.0010 3.9786 30 1 1.2817 -1.3762 4.2487 31 1 2.6527 1.4088 4.2105 32 1 -0.7436 -0.0954 4.7427 33 1 -2.0388 0.1496 6.8221 34 1 1.2101 2.2804 8.5907 35 1 2.5066 2.0237 6.5136 36 1 -0.1475 0.6435 3.1077 37 1 1.0534 1.8074 2.3939 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347794552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:28 Heat of formation + Delta-G solvation = -44.382320 kcal Electronic energy + Delta-G solvation = -20663.273416 eV Core-core repulsion = 17320.270208 eV Total energy + Delta-G solvation = -3343.003208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.84985 -41.58150 -39.88985 -38.34245 -35.78672 -33.06369 -32.13316 -32.03692 -29.01442 -27.38892 -26.95973 -25.00409 -24.01962 -23.33087 -21.24554 -19.85981 -18.66121 -18.37728 -17.64869 -17.51611 -17.12488 -16.81661 -16.54576 -16.00885 -15.71036 -15.27045 -14.64806 -14.56539 -14.42993 -14.35513 -13.89548 -13.63381 -13.61851 -13.25104 -12.96218 -12.95075 -12.66470 -12.56733 -12.30824 -12.19997 -12.03174 -11.92264 -11.81324 -11.04880 -10.60689 -10.28171 -10.00294 -9.57991 -9.47006 -8.16651 -6.27500 0.15080 0.33897 1.39828 1.40262 1.52294 1.85883 2.03682 2.44159 2.57732 3.12503 3.34665 3.58590 3.70399 3.79564 3.89006 4.03660 4.19583 4.24052 4.38474 4.51852 4.57243 4.62393 4.68821 4.74906 4.89947 4.96236 5.04092 5.05501 5.17159 5.19401 5.23252 5.34033 5.49793 5.62233 5.71696 5.95206 5.96800 6.21965 6.73998 6.86079 7.38731 7.47595 8.89174 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.045277 B = 0.003290 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.270307 B = 8507.826096 C = 8750.189403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.032 3.968 3 H 0.038 0.962 4 C -0.533 4.533 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.272 1.272 11 H -0.279 1.279 12 C 0.539 3.461 13 O -0.594 6.594 14 N -0.657 5.657 15 C 0.106 3.894 16 C -0.059 4.059 17 C -0.083 4.083 18 C -0.089 4.089 19 C -0.155 4.155 20 C 0.075 3.925 21 F -0.151 7.151 22 C -0.153 4.153 23 C -0.078 4.078 24 C 0.107 3.893 25 H 0.070 0.930 26 H 0.018 0.982 27 H 0.053 0.947 28 H 0.266 0.734 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.102 0.898 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.672 5.198 20.964 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.011 3.989 3 H 0.056 0.944 4 C -0.572 4.572 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.197 1.197 11 H -0.204 1.204 12 C 0.332 3.668 13 O -0.474 6.474 14 N -0.392 5.392 15 C -0.016 4.016 16 C -0.078 4.078 17 C -0.083 4.083 18 C -0.107 4.107 19 C -0.173 4.173 20 C 0.056 3.944 21 F -0.130 7.130 22 C -0.172 4.172 23 C -0.096 4.096 24 C -0.015 4.015 25 H 0.089 0.911 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.174 0.826 36 H 0.120 0.880 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.358 4.728 20.600 21.401 hybrid contribution 0.096 -0.585 -0.813 1.006 sum -3.262 4.143 19.787 20.477 Atomic orbital electron populations 1.21552 0.94989 0.99169 1.01774 1.18716 0.95353 0.95660 0.89147 0.94447 1.21305 1.31791 1.12798 0.91279 0.93586 1.25590 0.95130 0.95723 1.01366 1.69942 1.37125 1.23449 1.24384 0.85596 0.78637 0.78593 0.79068 1.19906 1.19737 1.20440 1.21365 0.78127 0.83053 0.84284 1.90504 1.41000 1.29065 1.86857 1.50214 1.52614 1.32127 1.04290 1.23377 1.02178 0.96818 0.79203 1.21989 0.99119 0.96292 0.90423 1.19649 0.94573 0.99167 0.94958 1.21084 0.93763 0.98402 0.97486 1.21295 1.02118 1.01309 0.92613 1.18033 0.91694 1.01737 0.82971 1.91473 1.78286 1.94281 1.48988 1.21365 0.93043 1.02255 1.00541 1.21173 1.00725 0.96726 0.90946 1.23581 0.96603 0.89754 0.91552 0.91077 0.96232 0.92800 0.92502 0.90669 0.88937 0.85723 0.84121 0.83655 0.83068 0.82582 0.87975 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.85 71.98 0.64 -4.74 16 2 C 0.03 1.66 2.47 -12.29 -0.03 1.63 16 3 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 4 C -0.53 -31.55 8.37 25.60 0.21 -31.33 16 5 H 0.05 2.92 6.75 -2.92 -0.02 2.90 16 6 C 0.02 1.20 5.30 84.65 0.45 1.65 16 7 N -0.91 -51.21 11.32 21.45 0.24 -50.97 16 8 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 9 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 12 C 0.54 25.68 7.38 87.66 0.65 26.33 16 13 O -0.59 -33.19 16.19 -3.04 -0.05 -33.23 16 14 N -0.66 -22.48 3.57 -836.76 -2.98 -25.47 16 15 C 0.11 2.67 8.30 86.48 0.72 3.38 16 16 C -0.06 -1.10 4.17 -10.87 -0.05 -1.14 16 17 C -0.08 -1.28 5.30 -19.86 -0.11 -1.39 16 18 C -0.09 -1.41 8.64 22.26 0.19 -1.22 16 19 C -0.15 -2.47 10.03 22.32 0.22 -2.25 16 20 C 0.07 1.29 7.30 22.38 0.16 1.45 16 21 F -0.15 -2.95 17.27 44.97 0.78 -2.17 16 22 C -0.15 -2.16 10.03 22.31 0.22 -1.94 16 23 C -0.08 -1.02 9.71 22.26 0.22 -0.81 16 24 C 0.11 2.55 6.25 86.49 0.54 3.09 16 25 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 26 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.05 1.98 6.13 -2.39 -0.01 1.97 16 28 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.09 2.07 7.75 -2.39 -0.02 2.06 16 31 H 0.12 2.02 8.10 -2.39 -0.02 2.00 16 32 H 0.14 2.04 6.62 -2.91 -0.02 2.02 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 35 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.10 2.07 6.11 -2.39 -0.01 2.06 16 37 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -71.55 313.88 5.14 -66.41 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.08 Total: 5.45 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 4.04 Total: -7.28 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -2.74 Total: -76.44 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.05 Total: -33.23 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -71.55 5.14 -66.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347794552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.030 kcal (2) G-P(sol) polarization free energy of solvation -71.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds