Wall clock time and date at job start Mon Mar 30 2020 01:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47034 * 2 1 4 4 C 1.50699 * 109.47285 * 239.99959 * 2 1 3 5 5 H 1.07999 * 120.00132 * 245.53360 * 4 2 1 6 6 C 1.37880 * 119.99991 * 65.52837 * 4 2 1 7 7 N 1.31522 * 119.99690 * 8.92225 * 6 4 2 8 8 Si 1.86795 * 120.00315 * 188.92246 * 6 4 2 9 9 H 1.48493 * 109.47040 * 84.99550 * 8 6 4 10 10 H 1.48501 * 109.47351 * 204.99971 * 8 6 4 11 11 H 1.48502 * 109.46716 * 324.99657 * 8 6 4 12 12 N 1.46901 * 109.47033 * 119.99790 * 2 1 3 13 13 C 1.46902 * 111.00013 * 176.04193 * 12 2 1 14 14 C 1.46898 * 111.00431 * 300.00304 * 12 2 1 15 15 C 1.50695 * 109.47339 * 169.99756 * 14 12 2 16 16 N 1.31267 * 126.19865 * 90.02222 * 15 14 12 17 17 N 1.28810 * 110.03932 * 179.97438 * 16 15 14 18 18 C 1.31388 * 109.25889 * 0.02562 * 17 16 15 19 19 C 1.46891 * 134.26808 * 179.97438 * 18 17 16 20 20 O 1.21742 * 120.78250 * 359.97438 * 19 18 17 21 21 N 1.35158 * 118.43074 * 179.29322 * 19 18 17 22 22 H 0.96997 * 119.85473 * 180.22423 * 21 19 18 23 23 C 1.38154 * 120.28656 * 0.61986 * 21 19 18 24 24 C 1.32807 * 121.84566 * 359.56374 * 23 21 19 25 25 N 1.34473 * 126.20405 * 269.71243 * 15 14 12 26 26 H 1.09007 * 109.47223 * 306.09966 * 1 2 3 27 27 H 1.09003 * 109.47191 * 66.09516 * 1 2 3 28 28 H 1.08997 * 109.47299 * 186.09902 * 1 2 3 29 29 H 0.97002 * 119.99764 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.47244 * 183.95542 * 13 12 2 31 31 H 1.08997 * 109.47086 * 303.95906 * 13 12 2 32 32 H 1.08999 * 109.46637 * 63.95817 * 13 12 2 33 33 H 1.09006 * 109.46559 * 289.99905 * 14 12 2 34 34 H 1.08995 * 109.47130 * 49.99358 * 14 12 2 35 35 H 1.08003 * 119.07648 * 179.58474 * 23 21 19 36 36 H 1.08001 * 119.45810 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5775 -1.6376 -1.1339 6 6 1.7958 -0.1766 -2.4795 7 7 1.2900 1.0321 -2.5931 8 14 2.1937 -1.1702 -4.0105 9 1 1.0514 -2.0627 -4.3321 10 1 2.4377 -0.2486 -5.1491 11 1 3.4085 -1.9889 -3.7673 12 7 2.0196 -0.6925 1.1995 13 6 3.4850 -0.7946 1.1871 14 6 1.5486 -0.0264 2.4211 15 6 1.8578 -0.8912 3.6159 16 7 2.9568 -0.8584 4.3330 17 7 2.8924 -1.7296 5.2796 18 6 1.7429 -2.3621 5.2089 19 6 1.1119 -3.4327 5.9920 20 8 1.6843 -3.9271 6.9460 21 7 -0.1249 -3.8463 5.6370 22 1 -0.5622 -4.5497 6.1418 23 6 -0.7655 -3.2772 4.5533 24 6 -0.2039 -2.3115 3.8351 25 7 1.0556 -1.8322 4.1442 26 1 -0.3634 0.6055 0.8304 27 1 -0.3634 0.4164 -0.9395 28 1 -0.3634 -1.0218 0.1092 29 1 1.1239 1.4078 -3.4718 30 1 3.8163 -1.3722 2.0501 31 1 3.8068 -1.2916 0.2719 32 1 3.9191 0.2043 1.2301 33 1 2.0519 0.9346 2.5280 34 1 0.4722 0.1324 2.3564 35 1 -1.7508 -3.6273 4.2828 36 1 -0.7398 -1.8938 2.9956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349648429.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:03 Heat of formation + Delta-G solvation = 84.724786 kcal Electronic energy + Delta-G solvation = -21518.265970 eV Core-core repulsion = 18233.073979 eV Total energy + Delta-G solvation = -3285.191992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.63927 -40.25401 -37.59426 -37.23553 -34.49683 -33.11234 -31.28850 -30.23917 -29.32630 -27.50780 -25.13211 -24.86850 -24.17957 -23.40001 -21.17701 -19.72331 -19.10441 -18.78028 -17.96750 -16.92209 -16.45375 -15.87994 -15.43168 -14.96919 -14.62883 -14.29828 -14.13341 -13.88074 -13.55900 -12.84672 -12.67384 -12.49405 -12.02436 -11.78231 -11.40056 -11.34594 -11.18375 -10.98224 -10.87539 -10.74832 -10.57151 -10.37945 -10.25515 -10.03788 -9.42055 -9.03620 -8.55362 -8.45150 -7.46420 -6.14850 -4.16308 0.76962 1.15582 2.18779 2.26795 2.61526 3.09830 3.25201 3.32177 3.35176 3.70519 4.09911 4.33198 4.49821 4.57756 4.79561 5.01077 5.19304 5.21229 5.42779 5.74928 5.81045 5.88224 6.11237 6.16519 6.29918 6.38186 6.53527 6.72961 6.76996 6.80138 6.93847 7.23763 7.39025 7.45244 7.69013 7.90115 8.06713 8.38692 8.46618 8.89700 9.48178 10.94171 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.028873 B = 0.004371 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.538553 B = 6403.632673 C = 6662.763684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.211 3.789 3 H 0.013 0.987 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.533 5.533 13 C 0.036 3.964 14 C 0.124 3.876 15 C 0.238 3.762 16 N -0.278 5.278 17 N -0.208 5.208 18 C 0.088 3.912 19 C 0.602 3.398 20 O -0.491 6.491 21 N -0.640 5.640 22 H 0.427 0.573 23 C 0.074 3.926 24 C -0.005 4.005 25 N -0.383 5.383 26 H 0.012 0.988 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.262 0.738 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.188 0.812 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.785 -6.283 11.411 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.106 3.894 3 H 0.030 0.970 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.260 5.260 13 C -0.113 4.113 14 C -0.006 4.006 15 C -0.027 4.027 16 N -0.122 5.122 17 N -0.054 5.054 18 C -0.174 4.174 19 C 0.388 3.612 20 O -0.361 6.361 21 N -0.284 5.284 22 H 0.267 0.733 23 C -0.046 4.046 24 C -0.124 4.124 25 N -0.069 5.069 26 H 0.031 0.969 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.205 0.795 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.199 -6.352 12.227 15.546 hybrid contribution -1.004 -0.314 -1.301 1.673 sum -8.203 -6.666 10.925 15.202 Atomic orbital electron populations 1.21829 0.98077 0.98695 1.00200 1.19323 0.91845 0.92991 0.85268 0.96955 1.21029 1.35863 1.08142 0.89601 0.91779 1.24911 0.95291 0.94663 0.99024 1.69959 1.44767 1.14134 1.23991 0.86564 0.78824 0.79952 0.82408 1.20551 1.21350 1.19921 1.62240 1.10872 1.52007 1.00835 1.22266 0.87348 0.99742 1.01897 1.20656 1.02231 0.92599 0.85135 1.25183 0.87184 0.91908 0.98424 1.74864 1.17730 1.16451 1.03141 1.74578 1.12848 1.03085 1.14903 1.24453 0.94388 1.03666 0.94885 1.16478 0.80633 0.80912 0.83206 1.90968 1.62415 1.56079 1.26625 1.43337 1.16319 1.38755 1.29959 0.73343 1.21345 0.99290 0.95267 0.88727 1.21127 0.85504 1.01200 1.04584 1.43545 1.14216 1.26628 1.22509 0.96936 0.90879 0.94387 0.92816 0.93479 0.90090 0.96096 0.91288 0.88456 0.79497 0.79679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 8.70 37.16 0.32 -2.35 16 2 C 0.21 4.82 1.92 -68.87 -0.13 4.68 16 3 H 0.01 0.33 8.09 -51.93 -0.42 -0.09 16 4 C -0.51 -12.97 7.66 -34.44 -0.26 -13.23 16 5 H 0.06 1.66 6.66 -52.49 -0.35 1.31 16 6 C 0.06 1.65 5.16 -17.82 -0.09 1.56 16 7 N -0.89 -24.05 12.14 55.43 0.67 -23.38 16 8 Si 0.89 20.37 29.55 -169.99 -5.02 15.35 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.53 -10.56 4.61 -237.73 -1.10 -11.66 16 13 C 0.04 0.72 9.09 60.07 0.55 1.26 16 14 C 0.12 2.06 5.31 -4.98 -0.03 2.03 16 15 C 0.24 3.96 6.73 -155.29 -1.05 2.92 16 16 N -0.28 -5.22 11.52 32.73 0.38 -4.85 16 17 N -0.21 -3.93 12.29 32.34 0.40 -3.54 16 18 C 0.09 1.42 8.12 -154.29 -1.25 0.16 16 19 C 0.60 8.14 7.97 -12.59 -0.10 8.04 16 20 O -0.49 -8.01 17.99 5.15 0.09 -7.92 16 21 N -0.64 -5.10 5.38 -13.15 -0.07 -5.17 16 22 H 0.43 1.98 8.92 -40.82 -0.36 1.62 16 23 C 0.07 0.46 11.09 -16.57 -0.18 0.28 16 24 C -0.01 -0.05 10.87 -16.51 -0.18 -0.23 16 25 N -0.38 -5.49 2.97 -58.39 -0.17 -5.67 16 26 H 0.01 0.21 6.53 -51.92 -0.34 -0.13 16 27 H 0.07 1.70 6.77 -51.93 -0.35 1.35 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.05 0.92 6.74 -51.93 -0.35 0.57 16 31 H 0.08 1.72 6.20 -51.93 -0.32 1.40 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 34 H 0.10 1.42 5.96 -51.93 -0.31 1.11 16 35 H 0.19 0.23 8.06 -52.48 -0.42 -0.20 16 36 H 0.19 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 305.09 15.07 4.60 4.60 Total: -1.00 -32.88 305.09 -6.69 -39.57 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -4.05 Total: -2.46 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -2.41 Total: 5.12 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.11 Total: -54.25 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.88 -6.69 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349648429.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.294 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds