Wall clock time and date at job start Mon Mar 30 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47228 * 2 1 4 4 C 1.50696 * 109.47175 * 120.00040 * 2 1 3 5 5 H 1.07999 * 120.00444 * 119.99477 * 4 2 1 6 6 C 1.37884 * 119.99844 * 300.00580 * 4 2 1 7 7 N 1.31506 * 119.99907 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99639 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47205 * 89.99789 * 8 6 4 10 10 H 1.48507 * 109.46912 * 209.99227 * 8 6 4 11 11 H 1.48497 * 109.47417 * 329.99376 * 8 6 4 12 12 N 1.46905 * 109.47357 * 239.99976 * 2 1 3 13 13 C 1.46898 * 111.00136 * 183.95720 * 12 2 1 14 14 C 1.46904 * 110.99848 * 60.00284 * 12 2 1 15 15 C 1.50700 * 109.46891 * 190.00096 * 14 12 2 16 16 N 1.31263 * 126.20033 * 90.02529 * 15 14 12 17 17 N 1.28804 * 110.03646 * 179.97438 * 16 15 14 18 18 C 1.31381 * 109.25970 * 0.02562 * 17 16 15 19 19 C 1.46898 * 134.26323 * 180.02562 * 18 17 16 20 20 O 1.21747 * 120.78182 * 359.95446 * 19 18 17 21 21 N 1.35152 * 118.43153 * 179.97438 * 19 18 17 22 22 H 0.96993 * 119.85424 * 180.02562 * 21 19 18 23 23 C 1.38152 * 120.28630 * 0.04552 * 21 19 18 24 24 C 1.32811 * 121.84764 * 359.95743 * 23 21 19 25 25 N 1.34466 * 126.19801 * 269.99961 * 15 14 12 26 26 H 1.08999 * 109.47270 * 300.00421 * 1 2 3 27 27 H 1.09008 * 109.46662 * 59.99672 * 1 2 3 28 28 H 1.08996 * 109.47256 * 179.97438 * 1 2 3 29 29 H 0.97009 * 119.99750 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.47123 * 296.04725 * 13 12 2 31 31 H 1.08994 * 109.47404 * 56.04309 * 13 12 2 32 32 H 1.09001 * 109.47219 * 176.04765 * 13 12 2 33 33 H 1.09002 * 109.47189 * 70.00000 * 14 12 2 34 34 H 1.09004 * 109.46909 * 310.00328 * 14 12 2 35 35 H 1.08001 * 119.07296 * 179.97438 * 23 21 19 36 36 H 1.07997 * 119.45382 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3212 -1.1204 4.0079 9 1 3.6295 -0.5460 4.4124 10 1 1.3430 -0.9493 5.1121 11 1 2.4857 -2.5663 3.7119 12 7 2.0197 -0.6925 -1.1995 13 6 3.4851 -0.7946 -1.1870 14 6 1.5488 -0.0263 -2.4211 15 6 1.8581 -0.8911 -3.6159 16 7 1.0770 -1.8130 -4.1287 17 7 1.6490 -2.3610 -5.1444 18 6 2.8282 -1.8111 -5.3266 19 6 3.9131 -2.0096 -6.2968 20 8 3.8158 -2.8435 -7.1785 21 7 5.0222 -1.2449 -6.1873 22 1 5.7510 -1.3584 -6.8171 23 6 5.1223 -0.3026 -5.1820 24 6 4.1484 -0.1138 -4.2989 25 7 2.9841 -0.8578 -4.3501 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7093 1.1617 3.4844 30 1 3.9193 0.2043 -1.2299 31 1 3.8070 -1.2915 -0.2719 32 1 3.8164 -1.3722 -2.0500 33 1 2.0520 0.9346 -2.5280 34 1 0.4723 0.1325 -2.3564 35 1 6.0175 0.2975 -5.1125 36 1 4.2674 0.6340 -3.5289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349648430.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:05 Heat of formation + Delta-G solvation = 89.469662 kcal Electronic energy + Delta-G solvation = -21545.682941 eV Core-core repulsion = 18260.696703 eV Total energy + Delta-G solvation = -3284.986238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.67672 -40.28915 -37.70219 -37.26928 -34.54360 -33.10925 -31.31388 -30.31055 -29.25752 -27.58081 -25.11988 -24.85994 -24.07652 -23.73911 -21.15504 -19.67662 -19.15367 -18.82177 -18.03074 -16.97969 -16.51880 -15.87923 -15.47907 -15.01562 -14.77734 -14.35824 -14.17501 -13.90483 -13.56140 -12.92244 -12.63531 -12.60209 -12.14334 -11.72439 -11.48426 -11.37566 -11.11481 -10.97539 -10.82524 -10.75101 -10.60143 -10.26335 -10.19956 -10.03914 -9.42357 -9.00708 -8.56183 -8.49106 -7.47900 -6.11365 -4.16444 0.72317 1.09635 2.13720 2.21556 2.60989 3.07394 3.24550 3.32559 3.36881 3.65126 4.05056 4.32121 4.42235 4.50897 4.76903 4.90034 5.11342 5.21646 5.42556 5.70692 5.75062 5.82986 5.88232 6.02892 6.08461 6.24446 6.51214 6.70178 6.77849 6.93893 6.97214 7.33146 7.34790 7.50956 7.71395 7.99806 8.16093 8.38360 8.49165 8.88272 9.49025 10.95319 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.031609 B = 0.004271 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.612860 B = 6554.948472 C = 6863.341262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.528 5.528 13 C 0.033 3.967 14 C 0.127 3.873 15 C 0.237 3.763 16 N -0.263 5.263 17 N -0.206 5.206 18 C 0.088 3.912 19 C 0.602 3.398 20 O -0.488 6.488 21 N -0.640 5.640 22 H 0.427 0.573 23 C 0.080 3.920 24 C -0.015 4.015 25 N -0.392 5.392 26 H 0.088 0.912 27 H 0.010 0.990 28 H 0.040 0.960 29 H 0.262 0.738 30 H 0.015 0.985 31 H 0.086 0.914 32 H 0.035 0.965 33 H 0.048 0.952 34 H 0.118 0.882 35 H 0.188 0.812 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.535 3.601 -13.324 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.111 3.889 3 H 0.021 0.979 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.253 5.253 13 C -0.116 4.116 14 C -0.003 4.003 15 C -0.027 4.027 16 N -0.106 5.106 17 N -0.052 5.052 18 C -0.174 4.174 19 C 0.388 3.612 20 O -0.358 6.358 21 N -0.284 5.284 22 H 0.267 0.733 23 C -0.041 4.041 24 C -0.134 4.134 25 N -0.079 5.079 26 H 0.107 0.893 27 H 0.029 0.971 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.136 0.864 35 H 0.205 0.795 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.814 1.838 -13.780 16.461 hybrid contribution 2.106 1.225 0.929 2.608 sum 10.920 3.063 -12.852 17.141 Atomic orbital electron populations 1.21905 0.97222 1.00310 1.00093 1.19317 0.92719 0.91951 0.84931 0.97906 1.21085 1.31480 1.12473 0.89510 0.91787 1.24904 0.95031 0.95034 0.99021 1.69876 1.36555 1.22914 1.23646 0.86503 0.78423 0.80147 0.82400 1.20790 1.21145 1.19788 1.62156 1.09470 1.52583 1.01135 1.22359 0.88552 0.98683 1.01996 1.20702 1.03951 0.90863 0.84809 1.25232 0.82155 0.98914 0.96447 1.74883 1.23888 1.07119 1.04734 1.74626 1.01624 1.18932 1.10067 1.24446 0.99252 0.97068 0.96642 1.16491 0.80412 0.81162 0.83133 1.90974 1.78708 1.32666 1.33467 1.43343 1.19370 1.34904 1.30793 0.73301 1.21327 1.00076 0.93711 0.89008 1.21061 0.85435 1.02360 1.04558 1.43706 1.14077 1.27295 1.22858 0.89326 0.97096 0.94106 0.92824 0.96682 0.89575 0.94588 0.93388 0.86378 0.79527 0.80159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.76 37.16 0.33 -2.83 16 2 C 0.22 5.02 2.06 -68.86 -0.14 4.88 16 3 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 4 C -0.51 -13.07 7.88 -34.44 -0.27 -13.35 16 5 H 0.06 1.66 6.41 -52.49 -0.34 1.33 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -24.08 11.32 55.43 0.63 -23.46 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.53 -10.55 4.61 -237.73 -1.10 -11.65 16 13 C 0.03 0.57 8.52 60.06 0.51 1.08 16 14 C 0.13 2.13 5.31 -4.97 -0.03 2.11 16 15 C 0.24 4.00 6.72 -155.30 -1.04 2.95 16 16 N -0.26 -5.13 12.23 32.73 0.40 -4.73 16 17 N -0.21 -3.96 12.28 32.34 0.40 -3.57 16 18 C 0.09 1.40 8.12 -154.30 -1.25 0.15 16 19 C 0.60 7.99 7.97 -12.59 -0.10 7.89 16 20 O -0.49 -7.89 17.99 5.15 0.09 -7.80 16 21 N -0.64 -4.83 5.38 -13.15 -0.07 -4.90 16 22 H 0.43 1.81 8.92 -40.82 -0.36 1.45 16 23 C 0.08 0.45 11.09 -16.57 -0.18 0.27 16 24 C -0.02 -0.14 9.51 -16.51 -0.16 -0.29 16 25 N -0.39 -5.50 2.56 -58.39 -0.15 -5.65 16 26 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 27 H 0.01 0.21 6.20 -51.92 -0.32 -0.11 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 31 H 0.09 1.67 6.10 -51.93 -0.32 1.35 16 32 H 0.04 0.57 5.97 -51.93 -0.31 0.26 16 33 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.12 2.03 5.83 -51.93 -0.30 1.73 16 35 H 0.19 0.10 8.06 -52.49 -0.42 -0.32 16 36 H 0.18 1.25 7.76 -52.49 -0.41 0.85 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -33.47 300.52 -6.64 -40.11 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -3.92 Total: -2.74 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -2.43 Total: 4.38 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.11 Total: -53.95 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.47 -6.64 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349648430.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.577 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds