Wall clock time and date at job start Mon Mar 30 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47228 * 2 1 4 4 C 1.50696 * 109.47175 * 120.00040 * 2 1 3 5 5 H 1.07999 * 120.00444 * 119.99477 * 4 2 1 6 6 C 1.37884 * 119.99844 * 300.00580 * 4 2 1 7 7 N 1.31506 * 119.99907 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99639 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47205 * 89.99789 * 8 6 4 10 10 H 1.48507 * 109.46912 * 209.99227 * 8 6 4 11 11 H 1.48497 * 109.47417 * 329.99376 * 8 6 4 12 12 N 1.46905 * 109.47357 * 239.99976 * 2 1 3 13 13 C 1.46898 * 111.00136 * 183.95720 * 12 2 1 14 14 C 1.46904 * 110.99848 * 60.00284 * 12 2 1 15 15 C 1.50700 * 109.46891 * 190.00096 * 14 12 2 16 16 N 1.31263 * 126.20033 * 90.02529 * 15 14 12 17 17 N 1.28804 * 110.03646 * 179.97438 * 16 15 14 18 18 C 1.31381 * 109.25970 * 0.02562 * 17 16 15 19 19 C 1.46898 * 134.26323 * 180.02562 * 18 17 16 20 20 O 1.21747 * 120.78182 * 359.95446 * 19 18 17 21 21 N 1.35152 * 118.43153 * 179.97438 * 19 18 17 22 22 H 0.96993 * 119.85424 * 180.02562 * 21 19 18 23 23 C 1.38152 * 120.28630 * 0.04552 * 21 19 18 24 24 C 1.32811 * 121.84764 * 359.95743 * 23 21 19 25 25 N 1.34466 * 126.19801 * 269.99961 * 15 14 12 26 26 H 1.08999 * 109.47270 * 300.00421 * 1 2 3 27 27 H 1.09008 * 109.46662 * 59.99672 * 1 2 3 28 28 H 1.08996 * 109.47256 * 179.97438 * 1 2 3 29 29 H 0.97009 * 119.99750 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.47123 * 296.04725 * 13 12 2 31 31 H 1.08994 * 109.47404 * 56.04309 * 13 12 2 32 32 H 1.09001 * 109.47219 * 176.04765 * 13 12 2 33 33 H 1.09002 * 109.47189 * 70.00000 * 14 12 2 34 34 H 1.09004 * 109.46909 * 310.00328 * 14 12 2 35 35 H 1.08001 * 119.07296 * 179.97438 * 23 21 19 36 36 H 1.07997 * 119.45382 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3212 -1.1204 4.0079 9 1 3.6295 -0.5460 4.4124 10 1 1.3430 -0.9493 5.1121 11 1 2.4857 -2.5663 3.7119 12 7 2.0197 -0.6925 -1.1995 13 6 3.4851 -0.7946 -1.1870 14 6 1.5488 -0.0263 -2.4211 15 6 1.8581 -0.8911 -3.6159 16 7 1.0770 -1.8130 -4.1287 17 7 1.6490 -2.3610 -5.1444 18 6 2.8282 -1.8111 -5.3266 19 6 3.9131 -2.0096 -6.2968 20 8 3.8158 -2.8435 -7.1785 21 7 5.0222 -1.2449 -6.1873 22 1 5.7510 -1.3584 -6.8171 23 6 5.1223 -0.3026 -5.1820 24 6 4.1484 -0.1138 -4.2989 25 7 2.9841 -0.8578 -4.3501 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7093 1.1617 3.4844 30 1 3.9193 0.2043 -1.2299 31 1 3.8070 -1.2915 -0.2719 32 1 3.8164 -1.3722 -2.0500 33 1 2.0520 0.9346 -2.5280 34 1 0.4723 0.1325 -2.3564 35 1 6.0175 0.2975 -5.1125 36 1 4.2674 0.6340 -3.5289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349648430.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:05 Heat of formation + Delta-G solvation = 64.283794 kcal Electronic energy + Delta-G solvation = -21546.775082 eV Core-core repulsion = 18260.696703 eV Total energy + Delta-G solvation = -3286.078379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.81997 -41.26787 -38.96208 -38.55585 -35.62635 -34.87595 -32.71112 -31.14771 -30.98471 -28.97350 -26.78971 -26.11555 -25.36448 -24.93973 -22.45489 -21.23864 -20.11566 -19.83682 -18.93115 -18.34926 -18.12336 -17.13982 -16.87801 -16.21198 -16.06996 -15.87085 -15.36862 -15.08114 -14.70039 -14.19908 -14.05769 -13.87247 -13.65500 -12.99450 -12.94277 -12.91171 -12.65058 -12.58306 -12.42514 -12.10918 -12.04325 -11.96192 -11.84437 -11.78021 -10.94314 -10.69554 -10.46957 -9.31060 -9.02377 -8.09709 -6.20213 -0.27754 0.18708 1.11058 1.36252 1.43039 1.45514 1.47527 1.56014 2.05424 2.44297 2.75989 3.04016 3.19346 3.34387 3.45520 3.70391 3.99879 4.25404 4.40380 4.44842 4.51991 4.59970 4.67156 4.87597 4.94567 5.01125 5.07863 5.25400 5.28573 5.45730 5.49873 5.71580 5.78098 5.83510 6.26625 6.31899 6.50260 6.61723 6.91543 7.26232 7.48464 8.95853 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.031609 B = 0.004271 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.612860 B = 6554.948472 C = 6863.341262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.224 3.776 3 H -0.013 1.013 4 C -0.519 4.519 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.548 5.548 13 C 0.040 3.960 14 C 0.137 3.863 15 C 0.224 3.776 16 N -0.301 5.301 17 N -0.259 5.259 18 C 0.081 3.919 19 C 0.599 3.401 20 O -0.526 6.526 21 N -0.612 5.612 22 H 0.449 0.551 23 C 0.128 3.872 24 C -0.067 4.067 25 N -0.374 5.374 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.024 0.976 29 H 0.262 0.738 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.257 0.743 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.717 4.930 -14.083 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.118 3.882 3 H 0.005 0.995 4 C -0.558 4.558 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.274 5.274 13 C -0.108 4.108 14 C 0.007 3.993 15 C -0.043 4.043 16 N -0.145 5.145 17 N -0.105 5.105 18 C -0.183 4.183 19 C 0.385 3.615 20 O -0.399 6.399 21 N -0.256 5.256 22 H 0.293 0.707 23 C 0.007 3.993 24 C -0.184 4.184 25 N -0.060 5.060 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.272 0.728 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 12.063 3.199 -14.554 19.173 hybrid contribution 1.276 0.864 1.045 1.862 sum 13.339 4.062 -13.509 19.415 Atomic orbital electron populations 1.21748 0.97492 0.99216 1.00182 1.19040 0.92465 0.90944 0.85774 0.99525 1.21360 1.31270 1.12275 0.90850 0.92574 1.25574 0.95310 0.95697 1.01506 1.69983 1.37426 1.23970 1.24090 0.85619 0.78167 0.78881 0.79308 1.19794 1.21175 1.20068 1.61954 1.11150 1.53062 1.01187 1.22271 0.87120 0.99979 1.01409 1.20577 1.03586 0.91790 0.83396 1.24941 0.83253 0.99098 0.96966 1.74728 1.25711 1.08472 1.05593 1.74485 1.03783 1.21038 1.11192 1.24904 0.99141 0.96870 0.97345 1.16458 0.81150 0.81641 0.82265 1.90958 1.79559 1.34608 1.34751 1.43309 1.17860 1.33350 1.31116 0.70697 1.22415 1.00517 0.90985 0.85368 1.21856 0.84735 1.04101 1.07659 1.43796 1.14524 1.26537 1.21099 0.91726 0.94495 0.95653 0.92873 0.94307 0.91952 0.93061 0.90390 0.87449 0.72762 0.77739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.00 8.76 71.98 0.63 -5.37 16 2 C 0.22 10.45 2.06 44.17 0.09 10.54 16 3 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 4 C -0.52 -26.95 7.88 25.60 0.20 -26.75 16 5 H 0.06 2.95 6.41 -2.91 -0.02 2.93 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.92 -49.86 11.32 21.45 0.24 -49.61 16 8 Si 0.95 42.07 29.54 68.60 2.03 44.09 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 12 N -0.55 -21.63 4.61 -906.03 -4.18 -25.82 16 13 C 0.04 1.35 8.52 127.69 1.09 2.43 16 14 C 0.14 4.46 5.31 85.56 0.45 4.91 16 15 C 0.22 7.45 6.72 138.09 0.93 8.38 16 16 N -0.30 -12.13 12.23 -50.37 -0.62 -12.74 16 17 N -0.26 -10.27 12.28 -51.58 -0.63 -10.91 16 18 C 0.08 2.54 8.12 135.97 1.10 3.65 16 19 C 0.60 14.82 7.97 86.45 0.69 15.50 16 20 O -0.53 -16.68 17.99 -4.50 -0.08 -16.76 16 21 N -0.61 -6.43 5.38 -313.49 -1.69 -8.12 16 22 H 0.45 1.44 8.92 -92.71 -0.83 0.62 16 23 C 0.13 0.65 11.09 82.52 0.92 1.56 16 24 C -0.07 -0.91 9.51 82.50 0.78 -0.13 16 25 N -0.37 -9.82 2.56 -338.65 -0.87 -10.69 16 26 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 27 H 0.04 1.48 6.20 -2.38 -0.01 1.47 16 28 H 0.02 1.20 8.14 -2.39 -0.02 1.19 16 29 H 0.26 13.66 8.31 -92.70 -0.77 12.89 16 30 H 0.04 1.10 8.01 -2.38 -0.02 1.08 16 31 H 0.06 2.37 6.10 -2.39 -0.01 2.36 16 32 H 0.05 1.53 5.97 -2.39 -0.01 1.52 16 33 H 0.08 2.06 8.12 -2.39 -0.02 2.04 16 34 H 0.11 3.69 5.83 -2.39 -0.01 3.68 16 35 H 0.26 -2.06 8.06 -2.91 -0.02 -2.09 16 36 H 0.21 1.77 7.76 -2.91 -0.02 1.74 16 Total: -1.00 -78.27 300.52 1.85 -76.42 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: 0.31 Total: -2.02 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 7.34 Total: 16.15 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -7.74 Total: -117.89 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.08 Total: -16.76 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -78.27 1.85 -76.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349648430.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.703 kcal (2) G-P(sol) polarization free energy of solvation -78.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds