Wall clock time and date at job start Mon Mar 30 2020 01:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47308 * 2 1 4 4 C 1.50702 * 109.47078 * 239.99618 * 2 1 3 5 5 H 1.08003 * 119.99818 * 245.28661 * 4 2 1 6 6 C 1.37870 * 119.99743 * 65.28818 * 4 2 1 7 7 N 1.31511 * 120.00306 * 5.43090 * 6 4 2 8 8 Si 1.86804 * 119.99831 * 185.42804 * 6 4 2 9 9 H 1.48504 * 109.46909 * 95.00079 * 8 6 4 10 10 H 1.48497 * 109.46990 * 214.99699 * 8 6 4 11 11 H 1.48495 * 109.47226 * 334.99797 * 8 6 4 12 12 C 1.50710 * 109.46865 * 119.99967 * 2 1 3 13 13 O 1.21272 * 119.99872 * 113.00489 * 12 2 1 14 14 N 1.34775 * 119.99578 * 292.72959 * 12 2 1 15 15 C 1.46924 * 120.62776 * 176.78754 * 14 12 2 16 16 C 1.53192 * 108.77757 * 126.36865 * 15 14 12 17 17 C 1.53033 * 109.31466 * 54.63394 * 16 15 14 18 18 F 1.39897 * 109.46006 * 58.65433 * 17 16 15 19 19 F 1.39894 * 109.46526 * 178.61486 * 17 16 15 20 20 C 1.53046 * 109.53791 * 298.63872 * 17 16 15 21 21 H 1.09005 * 109.49468 * 301.41074 * 20 17 16 22 22 C 1.52999 * 109.49600 * 181.31457 * 20 17 16 23 23 O 1.42905 * 109.47217 * 65.00099 * 22 20 17 24 24 C 1.46925 * 120.63667 * 356.50544 * 14 12 2 25 25 H 1.09003 * 109.47480 * 294.52023 * 1 2 3 26 26 H 1.09004 * 109.47059 * 54.51560 * 1 2 3 27 27 H 1.08997 * 109.47576 * 174.51759 * 1 2 3 28 28 H 0.96999 * 120.00115 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.58882 * 246.15672 * 15 14 12 30 30 H 1.08999 * 109.58801 * 6.43815 * 15 14 12 31 31 H 1.09002 * 109.50044 * 174.58699 * 16 15 14 32 32 H 1.09001 * 109.49594 * 294.68094 * 16 15 14 33 33 H 1.09007 * 109.47042 * 184.99762 * 22 20 17 34 34 H 1.08992 * 109.47399 * 304.99723 * 22 20 17 35 35 H 0.96699 * 113.99882 * 179.97438 * 23 22 20 36 36 H 1.09006 * 109.58347 * 353.41771 * 24 14 12 37 37 H 1.08996 * 109.58599 * 113.83932 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5810 -1.6357 -1.1335 6 6 1.7914 -0.1794 -2.4797 7 7 1.2182 0.9987 -2.5941 8 14 2.2795 -1.1331 -4.0100 9 1 1.1125 -1.9073 -4.5039 10 1 2.7260 -0.1853 -5.0624 11 1 3.3879 -2.0646 -3.6802 12 6 2.0323 -0.7105 1.2306 13 8 2.6213 -1.7651 1.1238 14 7 1.8316 -0.1709 2.4492 15 6 2.2528 -0.8846 3.6624 16 6 3.1442 0.0420 4.4952 17 6 2.4012 1.3527 4.7632 18 9 1.2057 1.0814 5.4371 19 9 3.2002 2.1890 5.5502 20 6 2.0914 2.0463 3.4345 21 1 3.0210 2.2358 2.8976 22 6 1.3777 3.3723 3.7050 23 8 2.2621 4.2571 4.3957 24 6 1.1931 1.1449 2.5895 25 1 -0.3634 0.4265 0.9350 26 1 -0.3633 0.5966 -0.8368 27 1 -0.3634 -1.0229 -0.0982 28 1 1.0491 1.3725 -3.4730 29 1 1.3750 -1.1668 4.2438 30 1 2.8104 -1.7792 3.3851 31 1 3.3852 -0.4399 5.4428 32 1 4.0638 0.2503 3.9483 33 1 1.0783 3.8234 2.7588 34 1 0.4940 3.1912 4.3167 35 1 1.8752 5.1195 4.6001 36 1 1.0539 1.5904 1.6044 37 1 0.2271 1.0317 3.0815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351013565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:33 Heat of formation + Delta-G solvation = -213.293988 kcal Electronic energy + Delta-G solvation = -23181.249287 eV Core-core repulsion = 19400.152294 eV Total energy + Delta-G solvation = -3781.096993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.96872 -47.91494 -41.13455 -38.58562 -37.25576 -35.85731 -33.57045 -33.30887 -31.87816 -27.24900 -26.93392 -26.44472 -24.49413 -23.17464 -21.63656 -20.25755 -18.72447 -18.31598 -18.26232 -17.83771 -17.70342 -17.09707 -16.83803 -16.29147 -16.14214 -15.30818 -14.99416 -14.90665 -14.73524 -14.53176 -14.25939 -13.93930 -13.83851 -13.77017 -13.55411 -13.15518 -13.06135 -12.92348 -12.75660 -12.61873 -12.32178 -12.24326 -12.23155 -11.98858 -11.41583 -11.04904 -10.89245 -10.56531 -10.31808 -9.76118 -8.18237 -6.24148 1.40497 1.42364 1.53455 1.81155 1.96644 2.45111 2.70941 2.92720 3.13749 3.17083 3.24927 3.44311 3.89279 3.95290 4.01125 4.20035 4.26991 4.34113 4.48414 4.56190 4.58011 4.67088 4.73392 4.74117 4.80913 4.91809 4.99628 5.00748 5.43353 5.53200 5.73090 5.86349 6.13417 6.47638 6.83662 6.90704 7.35831 7.45616 8.90778 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.005211 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.865505 B = 5371.767841 C = 5889.205303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.027 3.973 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.047 0.953 6 C 0.024 3.976 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.280 1.280 12 C 0.526 3.474 13 O -0.580 6.580 14 N -0.621 5.621 15 C 0.110 3.890 16 C -0.167 4.167 17 C 0.299 3.701 18 F -0.200 7.200 19 F -0.197 7.197 20 C -0.142 4.142 21 H 0.097 0.903 22 C 0.081 3.919 23 O -0.583 6.583 24 C 0.117 3.883 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.265 0.735 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.106 0.894 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 6.135 15.171 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.006 3.994 3 H 0.066 0.934 4 C -0.569 4.569 5 H 0.065 0.935 6 C -0.175 4.175 7 N -0.549 5.549 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.205 1.205 12 C 0.317 3.683 13 O -0.459 6.459 14 N -0.354 5.354 15 C -0.013 4.013 16 C -0.206 4.206 17 C 0.263 3.737 18 F -0.181 7.181 19 F -0.177 7.177 20 C -0.162 4.162 21 H 0.116 0.884 22 C 0.003 3.997 23 O -0.392 6.392 24 C -0.006 4.006 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.250 0.750 36 H 0.124 0.876 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.741 5.204 14.958 15.933 hybrid contribution 0.035 0.048 -0.804 0.806 sum -1.706 5.252 14.154 15.193 Atomic orbital electron populations 1.21611 0.94929 0.99977 1.01035 1.18796 0.95202 0.96224 0.89188 0.93369 1.21267 1.35803 1.08502 0.91288 0.93479 1.25520 0.95153 0.95606 1.01251 1.69970 1.43724 1.16588 1.24586 0.85662 0.78495 0.78722 0.79502 1.19872 1.20166 1.20539 1.21685 0.76709 0.84798 0.85079 1.90506 1.43146 1.25549 1.86691 1.48247 1.61483 1.20112 1.05608 1.21571 0.99241 0.95558 0.84890 1.22906 0.99926 0.93956 1.03778 1.20915 0.77011 0.90021 0.85758 1.92963 1.48163 1.94453 1.82507 1.93026 1.73996 1.73897 1.76822 1.22488 1.03067 0.96277 0.94405 0.88420 1.22027 0.91659 0.88242 0.97773 1.86503 1.43296 1.30071 1.79304 1.21709 0.95465 0.81484 1.01969 0.92199 0.92148 0.95605 0.92567 0.89158 0.89204 0.86194 0.88939 0.90466 0.91379 0.75011 0.87589 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 8.57 71.98 0.62 -4.42 16 2 C 0.03 1.30 1.66 -12.28 -0.02 1.28 16 3 H 0.05 2.39 7.12 -2.39 -0.02 2.37 16 4 C -0.53 -29.98 8.30 25.60 0.21 -29.77 16 5 H 0.05 2.87 6.78 -2.91 -0.02 2.85 16 6 C 0.02 1.34 5.28 84.65 0.45 1.78 16 7 N -0.91 -49.71 12.00 21.44 0.26 -49.45 16 8 Si 0.95 44.16 29.54 68.60 2.03 46.19 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 12 C 0.53 23.36 6.99 87.66 0.61 23.97 16 13 O -0.58 -30.03 14.90 -3.00 -0.04 -30.07 16 14 N -0.62 -20.59 2.98 -819.74 -2.44 -23.03 16 15 C 0.11 3.02 6.24 86.36 0.54 3.56 16 16 C -0.17 -3.91 5.62 30.67 0.17 -3.74 16 17 C 0.30 7.37 1.63 30.62 0.05 7.42 16 18 F -0.20 -4.85 15.56 44.97 0.70 -4.15 16 19 F -0.20 -5.43 15.44 44.97 0.69 -4.74 16 20 C -0.14 -3.48 2.29 -10.86 -0.02 -3.50 16 21 H 0.10 2.68 8.14 -2.38 -0.02 2.67 16 22 C 0.08 1.59 6.37 71.98 0.46 2.05 16 23 O -0.58 -12.07 12.08 -148.98 -1.80 -13.87 16 24 C 0.12 3.10 3.99 86.22 0.34 3.44 16 25 H 0.06 2.02 5.97 -2.39 -0.01 2.01 16 26 H 0.06 2.81 6.86 -2.38 -0.02 2.79 16 27 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.27 13.75 8.31 -92.71 -0.77 12.97 16 29 H 0.09 2.15 7.92 -2.38 -0.02 2.13 16 30 H 0.09 2.78 7.00 -2.39 -0.02 2.76 16 31 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.07 1.16 7.70 -2.39 -0.02 1.14 16 35 H 0.40 4.30 9.12 -74.06 -0.68 3.63 16 36 H 0.11 3.06 5.02 -2.38 -0.01 3.05 16 37 H 0.10 2.18 7.92 -2.39 -0.02 2.16 16 Total: -1.00 -68.64 301.17 3.22 -65.42 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.43 Total: 11.63 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 3.41 Total: 2.08 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -2.18 Total: -72.49 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -1.85 Total: -43.94 kcal Atomic # 9 Polarization: -10.28 SS G_CDS: 1.39 Total: -8.89 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -68.64 3.22 -65.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351013565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.878 kcal (2) G-P(sol) polarization free energy of solvation -68.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds