Wall clock time and date at job start Mon Mar 30 2020 01:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46649 * 2 1 4 4 C 1.50694 * 109.46796 * 120.00075 * 2 1 3 5 5 H 1.08007 * 120.00160 * 120.00399 * 4 2 1 6 6 C 1.37876 * 120.00376 * 300.00200 * 4 2 1 7 7 N 1.31517 * 120.00057 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00435 * 180.02562 * 6 4 2 9 9 H 1.48511 * 109.46792 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47338 * 119.99437 * 8 6 4 11 11 H 1.48500 * 109.47285 * 240.00145 * 8 6 4 12 12 C 1.50699 * 109.47236 * 240.00448 * 2 1 3 13 13 O 1.21281 * 119.99646 * 264.74763 * 12 2 1 14 14 N 1.34775 * 120.00222 * 85.02099 * 12 2 1 15 15 C 1.46923 * 120.62892 * 4.43271 * 14 12 2 16 16 C 1.53187 * 108.77606 * 233.58314 * 15 14 12 17 17 C 1.53052 * 109.31131 * 305.36621 * 16 15 14 18 18 F 1.39901 * 109.45577 * 181.38133 * 17 16 15 19 19 F 1.39901 * 109.45850 * 301.35472 * 17 16 15 20 20 C 1.53040 * 109.53451 * 61.36451 * 17 16 15 21 21 H 1.08998 * 109.49876 * 58.59142 * 20 17 16 22 22 C 1.53001 * 109.49517 * 178.64976 * 20 17 16 23 23 O 1.42904 * 109.47322 * 295.00257 * 22 20 17 24 24 C 1.46927 * 120.63037 * 184.14998 * 14 12 2 25 25 H 1.09000 * 109.47302 * 305.12186 * 1 2 3 26 26 H 1.09003 * 109.47008 * 65.12177 * 1 2 3 27 27 H 1.08998 * 109.46771 * 185.11531 * 1 2 3 28 28 H 0.96996 * 120.00103 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.58827 * 353.36937 * 15 14 12 30 30 H 1.09002 * 109.58593 * 113.79935 * 15 14 12 31 31 H 1.09003 * 109.49774 * 65.31677 * 16 15 14 32 32 H 1.08996 * 109.49992 * 185.38647 * 16 15 14 33 33 H 1.09002 * 109.46949 * 54.99902 * 22 20 17 34 34 H 1.08993 * 109.47138 * 174.99889 * 22 20 17 35 35 H 0.96701 * 114.00509 * 180.02562 * 23 22 20 36 36 H 1.09005 * 109.58851 * 246.20662 * 24 14 12 37 37 H 1.08998 * 109.58502 * 6.62807 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6035 8 14 2.3223 -1.1197 4.0080 9 1 3.1483 -2.2858 3.6037 10 1 3.1471 -0.1860 4.8161 11 1 1.1676 -1.5868 4.8164 12 6 2.0324 -0.7103 -1.2305 13 8 2.3252 -1.8859 -1.1749 14 7 2.1616 -0.0378 -2.3913 15 6 1.9096 1.4084 -2.4506 16 6 0.8857 1.6857 -3.5557 17 6 1.3832 1.0799 -4.8702 18 9 0.4653 1.3585 -5.8886 19 9 2.6254 1.6338 -5.1980 20 6 1.5264 -0.4357 -4.7134 21 1 0.5643 -0.8650 -4.4338 22 6 1.9915 -1.0444 -6.0379 23 8 0.9779 -0.8611 -7.0284 24 6 2.5630 -0.7359 -3.6202 25 1 -0.3634 0.5912 0.8405 26 1 -0.3633 0.4323 -0.9323 27 1 -0.3633 -1.0236 0.0916 28 1 0.7088 1.1612 3.4844 29 1 1.5157 1.7503 -1.4935 30 1 2.8390 1.9324 -2.6738 31 1 -0.0704 1.2364 -3.2869 32 1 0.7613 2.7620 -3.6748 33 1 2.9089 -0.5526 -6.3614 34 1 2.1787 -2.1095 -5.9023 35 1 1.2051 -1.2238 -7.8956 36 1 3.5446 -0.3833 -3.9368 37 1 2.6003 -1.8094 -3.4350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351013566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:34 Heat of formation + Delta-G solvation = -212.331515 kcal Electronic energy + Delta-G solvation = -23094.339447 eV Core-core repulsion = 19313.284190 eV Total energy + Delta-G solvation = -3781.055257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.96002 -47.90936 -41.10318 -38.55882 -37.33128 -35.86077 -33.79558 -32.64318 -32.18900 -27.26956 -27.13982 -26.39359 -23.87597 -23.75474 -21.66081 -20.10358 -18.69518 -18.49414 -18.09887 -17.84164 -17.76524 -17.19294 -16.90389 -16.25633 -16.01041 -15.35631 -15.08491 -14.88389 -14.70110 -14.52695 -14.25853 -13.95435 -13.81847 -13.66259 -13.49265 -13.31725 -13.04547 -12.94768 -12.66844 -12.60229 -12.34791 -12.27839 -12.21302 -12.04438 -11.45205 -11.02007 -10.93063 -10.61288 -10.28639 -9.75914 -8.15758 -6.25229 1.40162 1.43029 1.54987 1.81302 1.95780 2.45339 2.71522 2.93744 3.13145 3.16066 3.24363 3.46566 3.86631 3.92559 4.00219 4.21368 4.24095 4.36448 4.43999 4.54266 4.58743 4.64649 4.72976 4.75718 4.81225 4.93301 5.02033 5.03093 5.43554 5.51962 5.72648 5.91411 6.15532 6.47304 6.80357 6.86312 7.34803 7.44922 8.90462 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.035460 B = 0.004726 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.428515 B = 5923.626455 C = 6257.999794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.027 3.973 3 H 0.051 0.949 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.528 3.472 13 O -0.582 6.582 14 N -0.622 5.622 15 C 0.105 3.895 16 C -0.169 4.169 17 C 0.298 3.702 18 F -0.196 7.196 19 F -0.202 7.202 20 C -0.137 4.137 21 H 0.099 0.901 22 C 0.082 3.918 23 O -0.582 6.582 24 C 0.121 3.879 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.018 0.982 28 H 0.265 0.735 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.400 0.600 36 H 0.089 0.911 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 2.709 -17.086 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.006 3.994 3 H 0.068 0.932 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.319 3.681 13 O -0.461 6.461 14 N -0.355 5.355 15 C -0.017 4.017 16 C -0.208 4.208 17 C 0.262 3.738 18 F -0.177 7.177 19 F -0.183 7.183 20 C -0.158 4.158 21 H 0.117 0.883 22 C 0.004 3.996 23 O -0.390 6.390 24 C -0.002 4.002 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.250 0.750 36 H 0.107 0.893 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.600 2.512 -16.455 16.657 hybrid contribution 0.523 -0.687 0.357 0.935 sum 1.123 1.825 -16.098 16.240 Atomic orbital electron populations 1.21514 0.95151 0.99746 1.00905 1.18858 0.95030 0.96384 0.89135 0.93157 1.21237 1.31872 1.12398 0.91152 0.93826 1.25531 0.95133 0.95680 1.01241 1.69937 1.37018 1.23392 1.24330 0.85579 0.78317 0.78629 0.79572 1.20517 1.19815 1.20200 1.21688 0.74762 0.86718 0.84919 1.90508 1.51495 1.18774 1.85348 1.48284 1.69455 1.09568 1.08242 1.21899 0.99512 0.79758 1.00523 1.22963 1.01226 1.04915 0.91676 1.20953 0.73693 0.93442 0.85744 1.93028 1.66811 1.94820 1.63028 1.92963 1.44128 1.87339 1.93854 1.22585 1.02904 0.93148 0.97121 0.88291 1.22006 0.90656 1.00505 0.86457 1.86510 1.44333 1.83950 1.24231 1.21495 0.96767 0.99581 0.82376 0.90756 0.93558 0.96287 0.92525 0.87629 0.89209 0.88206 0.85939 0.91703 0.90670 0.75000 0.89290 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.21 8.74 71.98 0.63 -4.58 16 2 C 0.03 1.30 1.81 -12.29 -0.02 1.28 16 3 H 0.05 2.41 6.28 -2.39 -0.01 2.39 16 4 C -0.53 -29.77 8.33 25.60 0.21 -29.56 16 5 H 0.04 2.64 7.02 -2.91 -0.02 2.62 16 6 C 0.02 1.30 5.30 84.65 0.45 1.75 16 7 N -0.91 -49.33 11.38 21.45 0.24 -49.09 16 8 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 9 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.53 23.52 6.80 87.66 0.60 24.11 16 13 O -0.58 -30.07 15.24 -3.03 -0.05 -30.12 16 14 N -0.62 -20.86 2.97 -818.10 -2.43 -23.29 16 15 C 0.11 2.86 6.06 86.36 0.52 3.38 16 16 C -0.17 -3.86 5.62 30.67 0.17 -3.69 16 17 C 0.30 7.28 1.63 30.63 0.05 7.33 16 18 F -0.20 -5.33 15.44 44.97 0.69 -4.63 16 19 F -0.20 -4.99 15.55 44.97 0.70 -4.29 16 20 C -0.14 -3.32 2.32 -10.57 -0.02 -3.34 16 21 H 0.10 2.62 8.14 -2.39 -0.02 2.61 16 22 C 0.08 1.56 6.37 71.98 0.46 2.02 16 23 O -0.58 -11.51 12.08 -148.98 -1.80 -13.31 16 24 C 0.12 3.34 5.53 86.51 0.48 3.82 16 25 H 0.07 3.64 6.23 -2.39 -0.01 3.63 16 26 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 29 H 0.11 3.12 5.29 -2.39 -0.01 3.10 16 30 H 0.09 2.17 7.92 -2.39 -0.02 2.15 16 31 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.06 1.11 7.70 -2.39 -0.02 1.09 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.40 3.90 9.12 -74.06 -0.68 3.22 16 36 H 0.09 2.17 7.92 -2.38 -0.02 2.15 16 37 H 0.09 2.80 7.03 -2.39 -0.02 2.78 16 Total: -1.00 -68.17 303.57 3.34 -64.84 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.42 Total: 11.41 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 3.52 Total: 2.52 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -2.18 Total: -72.38 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.85 Total: -43.42 kcal Atomic # 9 Polarization: -10.32 SS G_CDS: 1.39 Total: -8.93 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -68.17 3.34 -64.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351013566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.494 kcal (2) G-P(sol) polarization free energy of solvation -68.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds