Wall clock time and date at job start Mon Mar 30 2020 02:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42892 * 113.99952 * 2 1 4 4 C 1.52999 * 109.47402 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46983 * 64.99695 * 4 3 2 6 6 C 1.37097 * 120.00002 * 264.55266 * 5 4 3 7 7 H 1.08000 * 120.00099 * 145.64970 * 6 5 4 8 8 C 1.38948 * 120.00209 * 325.65468 * 6 5 4 9 9 N 1.31408 * 119.99991 * 338.15448 * 8 6 5 10 10 Si 1.86804 * 120.00145 * 158.16094 * 8 6 5 11 11 H 1.48501 * 109.47278 * 89.99686 * 10 8 6 12 12 H 1.48502 * 109.46907 * 209.99755 * 10 8 6 13 13 H 1.48504 * 109.46877 * 329.99440 * 10 8 6 14 14 C 1.34771 * 119.99828 * 84.55348 * 5 4 3 15 15 O 1.21291 * 119.99957 * 0.02562 * 14 5 4 16 16 C 1.50702 * 120.00262 * 179.97438 * 14 5 4 17 17 C 1.53001 * 109.47455 * 180.02562 * 16 14 5 18 18 C 1.53782 * 113.61093 * 184.99900 * 17 16 14 19 19 C 1.53777 * 87.16827 * 220.05930 * 18 17 16 20 20 F 1.39904 * 113.61119 * 139.94197 * 19 18 17 21 21 F 1.39905 * 113.61836 * 270.84520 * 19 18 17 22 22 C 1.53777 * 87.08401 * 25.39396 * 19 18 17 23 23 H 1.09004 * 109.47358 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47562 * 299.99814 * 1 2 3 25 25 H 1.09003 * 109.47101 * 60.00343 * 1 2 3 26 26 H 1.08999 * 109.47350 * 59.99950 * 3 2 1 27 27 H 1.09002 * 109.47401 * 300.00107 * 3 2 1 28 28 H 1.09006 * 109.47074 * 304.99987 * 4 3 2 29 29 H 1.08994 * 109.47783 * 185.00315 * 4 3 2 30 30 H 0.97001 * 120.00069 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.46893 * 59.99517 * 16 14 5 32 32 H 1.09004 * 109.46696 * 300.00603 * 16 14 5 33 33 H 1.08998 * 112.90705 * 316.25025 * 17 16 14 34 34 H 1.09002 * 113.60732 * 105.47586 * 18 17 16 35 35 H 1.08995 * 113.61877 * 334.65415 * 18 17 16 36 36 H 1.09002 * 113.61524 * 89.11363 * 22 19 18 37 37 H 1.08997 * 113.61726 * 219.93073 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2055 -0.7868 -1.3027 7 1 3.9867 -1.3374 -2.2056 8 6 4.7190 -1.4475 -0.1934 9 7 5.3770 -0.7762 0.7249 10 14 4.4742 -3.2901 -0.0075 11 1 5.6059 -4.0070 -0.6484 12 1 4.4203 -3.6392 1.4349 13 1 3.2018 -3.6888 -0.6612 14 6 4.1575 1.3207 -2.3513 15 8 3.9554 2.5158 -2.3053 16 6 4.6119 0.6824 -3.6386 17 6 4.7388 1.7546 -4.7226 18 6 5.0806 1.1891 -6.1112 19 6 6.0196 2.3942 -6.2867 20 9 7.2289 2.0757 -6.9139 21 9 5.3951 3.5147 -6.8452 22 6 6.1154 2.4431 -4.7527 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8507 0.5685 0.8427 29 1 3.9784 2.1765 0.0903 30 1 5.7358 -1.2375 1.4991 31 1 3.8830 -0.0657 -3.9503 32 1 5.5797 0.2047 -3.4853 33 1 3.9014 2.4523 -4.7293 34 1 4.2374 1.1884 -6.8020 35 1 5.6005 0.2317 -6.0770 36 1 6.9185 1.8286 -4.3456 37 1 6.1092 3.4546 -4.3468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001450838201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:17 Heat of formation + Delta-G solvation = -158.607279 kcal Electronic energy + Delta-G solvation = -22398.665174 eV Core-core repulsion = 18619.939575 eV Total energy + Delta-G solvation = -3778.725599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.62051 -46.96355 -39.02567 -37.60387 -36.73481 -34.65090 -31.58057 -30.25407 -28.39030 -26.01878 -25.81893 -24.70871 -23.21099 -21.55599 -19.64390 -19.02959 -17.40121 -16.77388 -16.32425 -16.17533 -15.94028 -15.41851 -15.29693 -14.81388 -14.37464 -14.23176 -14.08338 -13.83454 -13.45376 -13.26964 -12.95408 -12.68140 -12.30743 -12.01740 -11.94325 -11.46730 -11.24283 -11.10103 -11.02560 -10.88739 -10.69059 -10.57381 -10.38554 -10.36188 -10.15258 -10.00284 -9.14339 -8.97174 -8.42102 -7.52756 -6.35289 -3.98983 3.14557 3.25619 3.31492 3.68762 3.88253 4.01311 4.15239 4.43921 4.51137 4.56682 4.68588 4.92853 5.12598 5.63864 5.64496 5.65929 5.68704 5.71488 5.76919 5.84153 5.96402 5.99886 6.04430 6.09418 6.28626 6.33745 6.41953 6.46319 6.71301 6.76768 7.28316 7.47482 7.80370 7.98647 8.37482 9.11819 9.52686 9.94192 10.67523 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.018852 B = 0.005258 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.909789 B = 5324.289579 C = 6125.432126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.113 3.887 5 N -0.428 5.428 6 C -0.325 4.325 7 H 0.088 0.912 8 C 0.049 3.951 9 N -0.863 5.863 10 Si 0.914 3.086 11 H -0.280 1.280 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.465 3.535 15 O -0.611 6.611 16 C -0.107 4.107 17 C -0.082 4.082 18 C -0.163 4.163 19 C 0.247 3.753 20 F -0.198 7.198 21 F -0.184 7.184 22 C -0.153 4.153 23 H 0.077 0.923 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.269 0.731 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 0.926 -6.412 7.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.011 4.011 5 N -0.145 5.145 6 C -0.453 4.453 7 H 0.105 0.895 8 C -0.157 4.157 9 N -0.500 5.500 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.254 3.746 15 O -0.499 6.499 16 C -0.146 4.146 17 C -0.101 4.101 18 C -0.201 4.201 19 C 0.211 3.789 20 F -0.179 7.179 21 F -0.165 7.165 22 C -0.191 4.191 23 H 0.095 0.905 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.693 1.307 -6.203 6.888 hybrid contribution -0.307 -0.656 0.087 0.729 sum -3.000 0.651 -6.116 6.843 Atomic orbital electron populations 1.22643 0.83457 1.01707 0.98836 1.88128 1.17348 1.27819 1.95039 1.23034 0.96642 0.84238 0.98608 1.21475 0.89086 0.99046 0.91506 1.43356 1.56095 1.07336 1.07730 1.19280 1.42312 0.82113 1.01559 0.89464 1.25220 0.94023 0.99855 0.96593 1.69901 1.31122 1.37143 1.11807 0.86166 0.78857 0.83227 0.77727 1.20621 1.20867 1.19308 1.20327 0.81349 0.86362 0.86555 1.90510 1.57973 1.15353 1.86058 1.21281 1.03484 0.97201 0.92667 1.22184 0.97464 0.97833 0.92583 1.24194 0.99257 0.97461 0.99159 1.22303 0.79874 0.85504 0.91234 1.92979 1.47092 1.92577 1.85204 1.92988 1.82104 1.54169 1.87240 1.24149 1.00130 1.04611 0.90237 0.90452 0.95176 0.94996 0.94393 0.94085 0.86629 0.91345 0.92125 0.89764 0.89103 0.87486 0.89300 0.87050 0.87243 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.70 10.44 -35.23 -0.37 -8.07 16 3 C 0.05 1.08 6.24 37.16 0.23 1.31 16 4 C 0.11 2.65 5.29 -4.04 -0.02 2.63 16 5 N -0.43 -10.40 2.51 -114.81 -0.29 -10.69 16 6 C -0.32 -8.00 8.48 -14.93 -0.13 -8.12 16 7 H 0.09 2.05 6.98 -52.49 -0.37 1.68 16 8 C 0.05 1.20 4.93 -17.47 -0.09 1.12 16 9 N -0.86 -22.37 11.34 55.50 0.63 -21.74 16 10 Si 0.91 19.55 29.61 -169.99 -5.03 14.52 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 14 C 0.46 10.65 7.60 -10.99 -0.08 10.57 16 15 O -0.61 -15.11 15.43 5.55 0.09 -15.02 16 16 C -0.11 -1.94 4.20 -27.88 -0.12 -2.06 16 17 C -0.08 -1.29 3.14 -89.72 -0.28 -1.57 16 18 C -0.16 -2.09 7.42 -25.92 -0.19 -2.28 16 19 C 0.25 3.56 3.28 -25.92 -0.08 3.47 16 20 F -0.20 -2.95 17.41 2.25 0.04 -2.91 16 21 F -0.18 -2.85 17.38 2.25 0.04 -2.81 16 22 C -0.15 -2.33 7.43 -25.83 -0.19 -2.52 16 23 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.12 2.93 5.37 -51.93 -0.28 2.65 16 29 H 0.07 1.62 7.59 -51.93 -0.39 1.23 16 30 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.08 1.44 7.65 -51.93 -0.40 1.04 16 32 H 0.09 1.63 7.80 -51.93 -0.40 1.23 16 33 H 0.11 1.84 7.68 -51.93 -0.40 1.44 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.11 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.11 1.58 7.90 -51.93 -0.41 1.17 16 37 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 318.80 15.07 4.80 4.80 Total: -1.00 -28.58 318.80 -5.10 -33.68 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.16 Total: 4.08 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 0.16 Total: 4.15 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.34 Total: -32.43 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.28 Total: -23.09 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.08 Total: -5.71 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.58 -5.10 -33.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001450838201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.929 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds