Wall clock time and date at job start Mon Mar 30 2020 02:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42892 * 113.99952 * 2 1 4 4 C 1.52999 * 109.47402 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46983 * 64.99695 * 4 3 2 6 6 C 1.37097 * 120.00002 * 264.55266 * 5 4 3 7 7 H 1.08000 * 120.00099 * 145.64970 * 6 5 4 8 8 C 1.38948 * 120.00209 * 325.65468 * 6 5 4 9 9 N 1.31408 * 119.99991 * 338.15448 * 8 6 5 10 10 Si 1.86804 * 120.00145 * 158.16094 * 8 6 5 11 11 H 1.48501 * 109.47278 * 89.99686 * 10 8 6 12 12 H 1.48502 * 109.46907 * 209.99755 * 10 8 6 13 13 H 1.48504 * 109.46877 * 329.99440 * 10 8 6 14 14 C 1.34771 * 119.99828 * 84.55348 * 5 4 3 15 15 O 1.21291 * 119.99957 * 0.02562 * 14 5 4 16 16 C 1.50702 * 120.00262 * 179.97438 * 14 5 4 17 17 C 1.53001 * 109.47455 * 180.02562 * 16 14 5 18 18 C 1.53782 * 113.61093 * 184.99900 * 17 16 14 19 19 C 1.53777 * 87.16827 * 220.05930 * 18 17 16 20 20 F 1.39904 * 113.61119 * 139.94197 * 19 18 17 21 21 F 1.39905 * 113.61836 * 270.84520 * 19 18 17 22 22 C 1.53777 * 87.08401 * 25.39396 * 19 18 17 23 23 H 1.09004 * 109.47358 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47562 * 299.99814 * 1 2 3 25 25 H 1.09003 * 109.47101 * 60.00343 * 1 2 3 26 26 H 1.08999 * 109.47350 * 59.99950 * 3 2 1 27 27 H 1.09002 * 109.47401 * 300.00107 * 3 2 1 28 28 H 1.09006 * 109.47074 * 304.99987 * 4 3 2 29 29 H 1.08994 * 109.47783 * 185.00315 * 4 3 2 30 30 H 0.97001 * 120.00069 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.46893 * 59.99517 * 16 14 5 32 32 H 1.09004 * 109.46696 * 300.00603 * 16 14 5 33 33 H 1.08998 * 112.90705 * 316.25025 * 17 16 14 34 34 H 1.09002 * 113.60732 * 105.47586 * 18 17 16 35 35 H 1.08995 * 113.61877 * 334.65415 * 18 17 16 36 36 H 1.09002 * 113.61524 * 89.11363 * 22 19 18 37 37 H 1.08997 * 113.61726 * 219.93073 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2055 -0.7868 -1.3027 7 1 3.9867 -1.3374 -2.2056 8 6 4.7190 -1.4475 -0.1934 9 7 5.3770 -0.7762 0.7249 10 14 4.4742 -3.2901 -0.0075 11 1 5.6059 -4.0070 -0.6484 12 1 4.4203 -3.6392 1.4349 13 1 3.2018 -3.6888 -0.6612 14 6 4.1575 1.3207 -2.3513 15 8 3.9554 2.5158 -2.3053 16 6 4.6119 0.6824 -3.6386 17 6 4.7388 1.7546 -4.7226 18 6 5.0806 1.1891 -6.1112 19 6 6.0196 2.3942 -6.2867 20 9 7.2289 2.0757 -6.9139 21 9 5.3951 3.5147 -6.8452 22 6 6.1154 2.4431 -4.7527 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8507 0.5685 0.8427 29 1 3.9784 2.1765 0.0903 30 1 5.7358 -1.2375 1.4991 31 1 3.8830 -0.0657 -3.9503 32 1 5.5797 0.2047 -3.4853 33 1 3.9014 2.4523 -4.7293 34 1 4.2374 1.1884 -6.8020 35 1 5.6005 0.2317 -6.0770 36 1 6.9185 1.8286 -4.3456 37 1 6.1092 3.4546 -4.3468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001450838201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:16 Heat of formation + Delta-G solvation = -174.770701 kcal Electronic energy + Delta-G solvation = -22399.366072 eV Core-core repulsion = 18619.939575 eV Total energy + Delta-G solvation = -3779.426498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.79404 -48.13952 -40.69504 -39.00816 -38.25236 -36.48529 -33.45536 -31.85593 -29.92321 -27.25743 -27.13890 -26.50083 -24.64027 -23.11656 -21.01398 -20.69707 -18.91248 -18.18710 -17.87947 -17.43020 -17.23580 -17.04544 -16.86087 -16.37509 -16.04886 -15.75579 -15.67075 -15.01606 -14.94859 -14.45309 -14.41073 -14.11786 -13.60242 -13.47680 -13.43045 -13.17138 -12.87715 -12.75786 -12.51713 -12.44901 -12.12190 -12.06875 -11.96707 -11.77353 -11.64455 -11.31162 -10.94299 -10.53336 -10.23188 -9.41268 -8.22097 -5.90665 1.45809 1.53933 1.64311 2.10570 2.39583 2.54546 2.84307 2.96586 3.04194 3.23421 3.34627 3.47738 3.62030 4.24788 4.28116 4.37788 4.46264 4.52976 4.55280 4.57999 4.59196 4.64379 4.72048 4.72594 4.79040 4.84369 4.99714 5.01428 5.04168 5.39722 5.41791 5.58973 6.05880 6.41920 6.49374 7.23943 7.69624 8.10851 8.81455 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.018852 B = 0.005258 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.909789 B = 5324.289579 C = 6125.432126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.065 3.935 4 C 0.110 3.890 5 N -0.442 5.442 6 C -0.333 4.333 7 H 0.098 0.902 8 C 0.008 3.992 9 N -0.895 5.895 10 Si 0.975 3.025 11 H -0.271 1.271 12 H -0.288 1.288 13 H -0.265 1.265 14 C 0.452 3.548 15 O -0.636 6.636 16 C -0.097 4.097 17 C -0.084 4.084 18 C -0.141 4.141 19 C 0.248 3.752 20 F -0.199 7.199 21 F -0.191 7.191 22 C -0.159 4.159 23 H 0.094 0.906 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.032 0.968 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.268 0.732 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.116 0.884 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 -0.522 -7.533 8.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.013 4.013 4 C -0.014 4.014 5 N -0.159 5.159 6 C -0.461 4.461 7 H 0.116 0.884 8 C -0.194 4.194 9 N -0.533 5.533 10 Si 0.799 3.201 11 H -0.197 1.197 12 H -0.214 1.214 13 H -0.189 1.189 14 C 0.243 3.757 15 O -0.525 6.525 16 C -0.136 4.136 17 C -0.103 4.103 18 C -0.179 4.179 19 C 0.212 3.788 20 F -0.180 7.180 21 F -0.172 7.172 22 C -0.197 4.197 23 H 0.112 0.888 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.409 -0.143 -7.339 8.094 hybrid contribution -0.108 -0.128 0.470 0.499 sum -3.517 -0.272 -6.869 7.722 Atomic orbital electron populations 1.22888 0.80687 1.03349 1.00225 1.88057 1.20411 1.27773 1.95298 1.22794 0.94631 0.84562 0.99272 1.21395 0.91285 0.97691 0.91077 1.43598 1.56488 1.07633 1.08179 1.19581 1.42020 0.82361 1.02093 0.88438 1.25962 0.93667 1.03513 0.96283 1.70004 1.32260 1.38668 1.12399 0.85226 0.78946 0.78672 0.77219 1.19673 1.21412 1.18949 1.21174 0.80567 0.86249 0.87721 1.90485 1.58821 1.16535 1.86681 1.21247 1.03710 0.97859 0.90785 1.22068 0.97122 0.97305 0.93846 1.24133 0.99454 0.97339 0.96930 1.22303 0.80178 0.85998 0.90350 1.92977 1.47310 1.92554 1.85128 1.92976 1.82204 1.54800 1.87259 1.24198 1.00173 1.04010 0.91302 0.88750 0.93141 0.94176 0.91964 0.94985 0.88525 0.92814 0.92193 0.88288 0.88676 0.89107 0.87234 0.84946 0.86546 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -16.33 10.44 -148.98 -1.55 -17.88 16 3 C 0.07 2.67 6.24 71.98 0.45 3.12 16 4 C 0.11 5.27 5.29 86.38 0.46 5.72 16 5 N -0.44 -21.60 2.51 -635.54 -1.60 -23.19 16 6 C -0.33 -16.20 8.48 84.04 0.71 -15.49 16 7 H 0.10 4.43 6.98 -2.91 -0.02 4.41 16 8 C 0.01 0.39 4.93 84.93 0.42 0.81 16 9 N -0.90 -46.91 11.34 21.66 0.25 -46.67 16 10 Si 0.97 39.43 29.61 68.60 2.03 41.46 16 11 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 12 H -0.29 -11.80 7.11 99.48 0.71 -11.10 16 13 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 14 C 0.45 20.79 7.60 87.66 0.67 21.46 16 15 O -0.64 -31.97 15.43 -3.06 -0.05 -32.02 16 16 C -0.10 -3.39 4.20 29.85 0.13 -3.26 16 17 C -0.08 -2.56 3.14 -10.21 -0.03 -2.59 16 18 C -0.14 -3.20 7.42 31.12 0.23 -2.97 16 19 C 0.25 6.69 3.28 31.12 0.10 6.79 16 20 F -0.20 -5.53 17.41 44.97 0.78 -4.74 16 21 F -0.19 -5.67 17.38 44.97 0.78 -4.89 16 22 C -0.16 -4.70 7.43 31.18 0.23 -4.47 16 23 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.10 5.03 5.37 -2.38 -0.01 5.01 16 29 H 0.05 2.65 7.59 -2.39 -0.02 2.63 16 30 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 31 H 0.10 3.18 7.65 -2.39 -0.02 3.16 16 32 H 0.09 3.27 7.80 -2.38 -0.02 3.25 16 33 H 0.09 3.07 7.68 -2.39 -0.02 3.06 16 34 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.13 2.51 8.10 -2.39 -0.02 2.49 16 36 H 0.12 3.25 7.90 -2.39 -0.02 3.23 16 37 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -61.12 318.80 6.32 -54.79 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 1.07 Total: 22.04 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 4.61 Total: 11.10 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -1.35 Total: -69.86 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -1.60 Total: -49.90 kcal Atomic # 9 Polarization: -11.20 SS G_CDS: 1.56 Total: -9.63 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -61.12 6.32 -54.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001450838201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.977 kcal (2) G-P(sol) polarization free energy of solvation -61.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds