Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 N 1.46503 * 109.46923 * 175.00014 * 4 2 1 6 6 C 1.36937 * 119.99744 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99760 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00054 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99818 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00214 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46581 * 59.99974 * 10 8 6 12 12 H 1.48501 * 109.47012 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46951 * 300.00026 * 10 8 6 14 14 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 15 15 C 1.34770 * 120.00256 * 84.99846 * 14 2 1 16 16 O 1.21716 * 120.00265 * 359.97438 * 15 14 2 17 17 C 1.46599 * 120.00190 * 180.02562 * 15 14 2 18 18 C 1.41156 * 126.55763 * 359.68666 * 17 15 14 19 19 N 1.30531 * 108.27062 * 179.83459 * 18 17 15 20 20 N 1.39987 * 109.36934 * 0.42138 * 19 18 17 21 21 C 1.38452 * 143.84718 * 179.71102 * 20 19 18 22 22 C 1.33077 * 108.41743 * 180.02562 * 21 20 19 23 23 N 1.38056 * 108.14129 * 0.02562 * 22 21 20 24 24 H 0.97001 * 126.16644 * 180.02562 * 23 22 21 25 25 C 1.35013 * 108.27705 * 359.73955 * 20 19 18 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 30 30 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 31 31 H 0.96994 * 120.00097 * 0.02562 * 5 4 2 32 32 H 0.97001 * 119.99831 * 179.97438 * 9 8 6 33 33 H 0.97005 * 119.99374 * 264.99912 * 14 2 1 34 34 H 1.08002 * 125.86874 * 359.97438 * 18 17 15 35 35 H 1.07993 * 125.79331 * 0.02562 * 21 20 19 36 36 H 1.08006 * 125.92971 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1839 -1.4389 2.2066 7 1 3.6468 -1.8440 3.0515 8 6 5.5673 -1.5380 2.1513 9 7 6.2219 -1.0437 1.1219 10 14 6.5001 -2.3729 3.5378 11 1 6.0443 -3.7806 3.6636 12 1 7.9549 -2.3488 3.2404 13 1 6.2427 -1.6535 4.8111 14 7 2.0184 -0.6905 -1.1962 15 6 2.1471 -0.0181 -2.3571 16 8 1.8572 1.1628 -2.4119 17 6 2.6353 -0.7092 -3.5543 18 6 3.0141 -2.0658 -3.6462 19 7 3.3877 -2.3041 -4.8740 20 7 3.2814 -1.1294 -5.6279 21 6 3.4700 -0.5892 -6.8887 22 6 3.1299 0.6968 -6.8504 23 7 2.7205 0.9950 -5.5661 24 1 2.4159 1.8595 -5.2486 25 6 2.8205 -0.1492 -4.8218 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.7517 -0.1584 2.1369 30 1 1.6055 -1.7199 1.2951 31 1 3.9825 -0.4621 0.4319 32 1 7.1887 -1.1127 1.0834 33 1 2.2491 -1.6317 -1.1527 34 1 2.9955 -2.7841 -2.8399 35 1 3.8318 -1.1212 -7.7561 36 1 3.1683 1.3875 -7.6798 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498172361.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = 109.254333 kcal Electronic energy + Delta-G solvation = -21049.388075 eV Core-core repulsion = 17765.259764 eV Total energy + Delta-G solvation = -3284.128311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.08684 -39.20361 -37.92954 -35.93463 -33.50958 -32.75214 -31.23966 -29.96335 -29.62454 -28.21715 -25.59997 -23.26332 -22.55134 -22.39641 -21.16540 -20.66687 -19.95627 -17.97496 -16.99077 -16.33466 -16.20556 -15.90790 -15.36380 -14.88070 -14.55700 -14.26921 -14.02937 -13.57962 -13.39377 -13.24526 -13.10355 -12.62984 -12.25369 -12.12747 -11.99873 -11.50381 -10.89138 -10.85413 -10.76680 -10.57594 -10.38199 -10.01526 -9.68260 -9.43370 -9.18691 -8.85862 -8.54547 -7.60103 -6.90079 -5.72354 -3.02176 1.53892 1.88037 1.99366 2.46976 2.74970 3.46545 3.50916 3.52187 3.73863 3.89682 4.34534 4.62038 4.64986 4.79052 5.13689 5.22767 5.36561 5.52443 5.58656 5.61092 5.63400 5.73582 5.82147 6.11926 6.19710 6.28273 6.48651 6.52516 6.58409 6.80019 6.81529 7.01535 7.12525 7.71567 7.72336 8.12595 8.45409 8.80618 9.57064 10.14276 10.49823 11.49738 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.004605 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.178512 B = 6079.013602 C = 7027.771745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 H 0.085 0.915 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.243 4.243 7 H 0.070 0.930 8 C -0.011 4.011 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.286 1.286 14 N -0.708 5.708 15 C 0.605 3.395 16 O -0.577 6.577 17 C -0.328 4.328 18 C 0.133 3.867 19 N -0.303 5.303 20 N -0.309 5.309 21 C 0.002 3.998 22 C 0.024 3.976 23 N -0.574 5.574 24 H 0.443 0.557 25 C 0.319 3.681 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.024 0.976 31 H 0.387 0.613 32 H 0.255 0.745 33 H 0.401 0.599 34 H 0.202 0.798 35 H 0.191 0.809 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.754 2.421 -16.478 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.103 0.897 4 C 0.016 3.984 5 N -0.376 5.376 6 C -0.374 4.374 7 H 0.088 0.912 8 C -0.208 4.208 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.213 1.213 14 N -0.357 5.357 15 C 0.394 3.606 16 O -0.459 6.459 17 C -0.348 4.348 18 C -0.051 4.051 19 N -0.125 5.125 20 N -0.079 5.079 21 C -0.124 4.124 22 C -0.104 4.104 23 N -0.186 5.186 24 H 0.285 0.715 25 C 0.083 3.917 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.221 0.779 32 H 0.065 0.935 33 H 0.236 0.764 34 H 0.219 0.781 35 H 0.208 0.792 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.440 2.193 -17.200 19.742 hybrid contribution 0.576 0.214 1.185 1.335 sum -8.864 2.407 -16.015 18.462 Atomic orbital electron populations 1.22100 0.95738 1.01769 1.01920 1.21181 0.93146 0.97956 0.84540 0.89668 1.20983 0.86849 0.96949 0.93619 1.42362 0.99761 1.70228 1.25292 1.19176 0.89423 1.29583 0.99255 0.91220 1.24743 0.96439 1.01568 0.98009 1.69669 1.07255 1.50701 1.30220 0.86279 0.78997 0.79279 0.81672 1.21260 1.21757 1.21320 1.45638 1.67020 1.14162 1.08905 1.16811 0.76226 0.85560 0.81994 1.90700 1.53721 1.15807 1.85693 1.18534 1.29669 0.94831 0.91740 1.24071 0.92187 0.94472 0.94341 1.77493 1.31284 0.99576 1.04125 1.47046 1.44836 1.07958 1.08053 1.21548 1.11341 0.92291 0.87264 1.22239 1.04255 0.95914 0.88022 1.41543 1.58388 1.10818 1.07901 0.71481 1.19220 0.98131 0.82710 0.91634 0.92628 0.91863 0.92532 0.95016 0.95802 0.77890 0.93484 0.76382 0.78129 0.79234 0.77997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.48 37.16 0.35 -1.88 16 2 C 0.14 2.40 2.73 -67.93 -0.19 2.21 16 3 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 4 C 0.14 2.86 5.82 -4.04 -0.02 2.84 16 5 N -0.73 -18.45 5.43 -59.91 -0.33 -18.78 16 6 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 9 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 10 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 14 N -0.71 -12.15 4.51 -55.13 -0.25 -12.40 16 15 C 0.60 11.00 7.75 -12.89 -0.10 10.90 16 16 O -0.58 -11.72 16.57 5.17 0.09 -11.64 16 17 C -0.33 -5.42 6.15 -104.83 -0.65 -6.06 16 18 C 0.13 2.02 11.48 -17.00 -0.20 1.83 16 19 N -0.30 -4.81 12.61 30.85 0.39 -4.42 16 20 N -0.31 -4.39 4.67 -11.88 -0.06 -4.44 16 21 C 0.00 0.02 11.91 -16.35 -0.19 -0.18 16 22 C 0.02 0.17 11.92 -16.54 -0.20 -0.03 16 23 N -0.57 -6.08 6.24 -11.98 -0.07 -6.15 16 24 H 0.44 4.03 8.96 -40.82 -0.37 3.66 16 25 C 0.32 4.73 8.38 -154.53 -1.29 3.44 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.39 10.50 7.33 -40.82 -0.30 10.20 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.40 6.46 7.54 -40.82 -0.31 6.15 16 34 H 0.20 2.50 7.49 -52.49 -0.39 2.11 16 35 H 0.19 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.20 0.37 8.06 -52.48 -0.42 -0.06 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -36.81 316.94 -6.75 -43.55 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -4.26 Total: 14.06 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -2.73 Total: 5.70 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: 0.41 Total: -73.91 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.81 -6.75 -43.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498172361.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.807 kcal (2) G-P(sol) polarization free energy of solvation -36.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds