Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 N 1.46503 * 109.46923 * 175.00014 * 4 2 1 6 6 C 1.36937 * 119.99744 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99760 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00054 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99818 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00214 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46581 * 59.99974 * 10 8 6 12 12 H 1.48501 * 109.47012 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46951 * 300.00026 * 10 8 6 14 14 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 15 15 C 1.34770 * 120.00256 * 84.99846 * 14 2 1 16 16 O 1.21716 * 120.00265 * 359.97438 * 15 14 2 17 17 C 1.46599 * 120.00190 * 180.02562 * 15 14 2 18 18 C 1.41156 * 126.55763 * 359.68666 * 17 15 14 19 19 N 1.30531 * 108.27062 * 179.83459 * 18 17 15 20 20 N 1.39987 * 109.36934 * 0.42138 * 19 18 17 21 21 C 1.38452 * 143.84718 * 179.71102 * 20 19 18 22 22 C 1.33077 * 108.41743 * 180.02562 * 21 20 19 23 23 N 1.38056 * 108.14129 * 0.02562 * 22 21 20 24 24 H 0.97001 * 126.16644 * 180.02562 * 23 22 21 25 25 C 1.35013 * 108.27705 * 359.73955 * 20 19 18 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 30 30 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 31 31 H 0.96994 * 120.00097 * 0.02562 * 5 4 2 32 32 H 0.97001 * 119.99831 * 179.97438 * 9 8 6 33 33 H 0.97005 * 119.99374 * 264.99912 * 14 2 1 34 34 H 1.08002 * 125.86874 * 359.97438 * 18 17 15 35 35 H 1.07993 * 125.79331 * 0.02562 * 21 20 19 36 36 H 1.08006 * 125.92971 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1839 -1.4389 2.2066 7 1 3.6468 -1.8440 3.0515 8 6 5.5673 -1.5380 2.1513 9 7 6.2219 -1.0437 1.1219 10 14 6.5001 -2.3729 3.5378 11 1 6.0443 -3.7806 3.6636 12 1 7.9549 -2.3488 3.2404 13 1 6.2427 -1.6535 4.8111 14 7 2.0184 -0.6905 -1.1962 15 6 2.1471 -0.0181 -2.3571 16 8 1.8572 1.1628 -2.4119 17 6 2.6353 -0.7092 -3.5543 18 6 3.0141 -2.0658 -3.6462 19 7 3.3877 -2.3041 -4.8740 20 7 3.2814 -1.1294 -5.6279 21 6 3.4700 -0.5892 -6.8887 22 6 3.1299 0.6968 -6.8504 23 7 2.7205 0.9950 -5.5661 24 1 2.4159 1.8595 -5.2486 25 6 2.8205 -0.1492 -4.8218 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.7517 -0.1584 2.1369 30 1 1.6055 -1.7199 1.2951 31 1 3.9825 -0.4621 0.4319 32 1 7.1887 -1.1127 1.0834 33 1 2.2491 -1.6317 -1.1527 34 1 2.9955 -2.7841 -2.8399 35 1 3.8318 -1.1212 -7.7561 36 1 3.1683 1.3875 -7.6798 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498172361.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = 81.510595 kcal Electronic energy + Delta-G solvation = -21050.591134 eV Core-core repulsion = 17765.259764 eV Total energy + Delta-G solvation = -3285.331369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.04043 -40.55198 -38.96592 -37.53326 -35.36512 -33.76010 -32.92450 -31.58029 -30.59864 -29.25877 -27.37584 -24.71970 -24.08339 -23.39549 -22.19176 -21.89126 -21.28875 -19.37343 -18.81907 -17.52099 -17.21493 -17.04278 -16.61074 -16.53872 -15.77607 -15.64795 -15.20661 -15.11400 -15.04505 -14.46521 -14.12880 -13.86763 -13.62419 -13.58939 -13.43202 -13.01822 -12.72165 -12.60456 -12.17347 -12.04783 -11.84749 -11.65554 -11.55820 -10.96078 -10.79830 -10.15992 -9.94727 -8.97647 -8.61775 -7.90791 -5.20556 0.67841 0.80239 1.07037 1.47466 1.49794 1.52827 1.58818 1.96991 2.40805 2.57954 2.59339 3.35675 3.43459 3.78700 3.87506 4.09249 4.11903 4.19982 4.37511 4.43124 4.52543 4.60043 4.74383 4.86140 4.88955 4.92719 4.99264 5.18995 5.36397 5.44006 5.53624 5.71679 5.84719 6.25031 6.29232 6.63766 6.78663 7.36601 7.42674 8.11499 8.35133 9.32098 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.004605 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.178512 B = 6079.013602 C = 7027.771745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.143 3.857 3 H 0.058 0.942 4 C 0.146 3.854 5 N -0.744 5.744 6 C -0.245 4.245 7 H 0.080 0.920 8 C -0.074 4.074 9 N -0.970 5.970 10 Si 0.974 3.026 11 H -0.275 1.275 12 H -0.300 1.300 13 H -0.279 1.279 14 N -0.705 5.705 15 C 0.601 3.399 16 O -0.607 6.607 17 C -0.360 4.360 18 C 0.129 3.871 19 N -0.330 5.330 20 N -0.313 5.313 21 C -0.030 4.030 22 C 0.058 3.942 23 N -0.566 5.566 24 H 0.450 0.550 25 C 0.293 3.707 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.374 0.626 32 H 0.249 0.751 33 H 0.406 0.594 34 H 0.216 0.784 35 H 0.223 0.777 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.535 2.437 -17.414 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.038 3.962 3 H 0.076 0.924 4 C 0.019 3.981 5 N -0.387 5.387 6 C -0.376 4.376 7 H 0.098 0.902 8 C -0.266 4.266 9 N -0.620 5.620 10 Si 0.803 3.197 11 H -0.201 1.201 12 H -0.226 1.226 13 H -0.205 1.205 14 N -0.355 5.355 15 C 0.392 3.608 16 O -0.492 6.492 17 C -0.380 4.380 18 C -0.053 4.053 19 N -0.152 5.152 20 N -0.083 5.083 21 C -0.154 4.154 22 C -0.069 4.069 23 N -0.179 5.179 24 H 0.293 0.707 25 C 0.054 3.946 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.058 0.942 33 H 0.241 0.759 34 H 0.232 0.768 35 H 0.239 0.761 36 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -10.272 2.193 -18.128 20.951 hybrid contribution 0.764 0.303 1.339 1.571 sum -9.508 2.496 -16.789 19.455 Atomic orbital electron populations 1.21994 0.92782 1.03047 1.02477 1.21064 0.95258 0.96053 0.83817 0.92422 1.21139 0.83991 0.98073 0.94913 1.42553 1.01905 1.69924 1.24330 1.19630 0.89894 1.28389 0.99704 0.90175 1.25560 0.97530 1.03059 1.00470 1.69849 1.06924 1.52847 1.32421 0.85212 0.76957 0.78695 0.78873 1.20053 1.22613 1.20528 1.45601 1.66953 1.14274 1.08649 1.17088 0.75822 0.85298 0.82599 1.90657 1.55325 1.16960 1.86234 1.18506 1.31799 0.95656 0.92086 1.24301 0.91843 0.94469 0.94715 1.77346 1.32199 1.01141 1.04505 1.47318 1.44332 1.07213 1.09399 1.22495 1.12777 0.93413 0.86701 1.23319 1.00241 0.95884 0.87421 1.41822 1.57262 1.10008 1.08784 0.70731 1.19385 0.99018 0.84414 0.91737 0.90946 0.90115 0.93135 0.94363 0.94057 0.79439 0.94242 0.75883 0.76779 0.76067 0.72150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.48 71.98 0.68 -3.26 16 2 C 0.14 5.03 2.73 44.99 0.12 5.15 16 3 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 4 C 0.15 5.68 5.82 86.38 0.50 6.18 16 5 N -0.74 -37.80 5.43 -343.46 -1.87 -39.66 16 6 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 7 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 8 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 9 N -0.97 -60.49 13.06 21.65 0.28 -60.21 16 10 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 N -0.71 -24.78 4.51 -446.56 -2.01 -26.79 16 15 C 0.60 22.63 7.75 86.43 0.67 23.30 16 16 O -0.61 -25.47 16.57 -4.40 -0.07 -25.55 16 17 C -0.36 -12.32 6.15 -20.00 -0.12 -12.44 16 18 C 0.13 4.09 11.48 85.60 0.98 5.07 16 19 N -0.33 -10.64 12.61 -56.32 -0.71 -11.35 16 20 N -0.31 -8.69 4.67 -191.51 -0.89 -9.58 16 21 C -0.03 -0.48 11.91 82.49 0.98 0.50 16 22 C 0.06 0.61 11.92 82.56 0.98 1.59 16 23 N -0.57 -11.06 6.24 -191.82 -1.20 -12.26 16 24 H 0.45 7.55 8.96 -92.71 -0.83 6.72 16 25 C 0.29 8.68 8.38 133.14 1.12 9.79 16 26 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.37 20.83 7.33 -92.71 -0.68 20.15 16 32 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.41 13.37 7.54 -92.70 -0.70 12.67 16 34 H 0.22 5.62 7.49 -2.91 -0.02 5.60 16 35 H 0.22 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.26 -0.63 8.06 -2.91 -0.02 -0.65 16 Total: -1.00 -81.86 316.94 1.72 -80.14 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: -1.07 Total: 37.55 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 7.23 Total: 19.35 kcal Atomic # 7 Polarization: -153.47 SS G_CDS: -6.40 Total: -159.87 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.07 Total: -25.55 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -81.86 1.72 -80.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498172361.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.650 kcal (2) G-P(sol) polarization free energy of solvation -81.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds