Wall clock time and date at job start Mon Mar 30 2020 02:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 111.00495 * 2 1 4 4 C 1.53228 * 109.34167 * 172.74386 * 3 2 1 5 5 N 1.47083 * 108.52212 * 53.83090 * 4 3 2 6 6 S 1.65603 * 120.87904 * 128.78930 * 5 4 3 7 7 O 1.42095 * 106.40218 * 23.56997 * 6 5 4 8 8 O 1.42103 * 106.39640 * 156.48475 * 6 5 4 9 9 N 1.65599 * 107.22219 * 270.02193 * 6 5 4 10 10 C 1.46497 * 119.99561 * 65.00270 * 9 6 5 11 11 C 1.52997 * 109.47288 * 165.00397 * 10 9 6 12 12 C 1.50702 * 109.47689 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99308 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00106 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99874 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00047 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46983 * 90.00532 * 16 14 12 18 18 H 1.48495 * 109.47137 * 210.00171 * 16 14 12 19 19 H 1.48497 * 109.47375 * 330.00436 * 16 14 12 20 20 C 1.47072 * 118.23733 * 308.81485 * 5 4 3 21 21 C 1.46906 * 110.99831 * 235.69682 * 2 1 3 22 22 H 1.09003 * 109.47327 * 184.29842 * 1 2 3 23 23 H 1.09001 * 109.47007 * 304.30405 * 1 2 3 24 24 H 1.09009 * 109.46548 * 64.30232 * 1 2 3 25 25 H 1.08997 * 109.49089 * 292.70978 * 3 2 1 26 26 H 1.09007 * 109.49281 * 52.78116 * 3 2 1 27 27 H 1.08995 * 109.63228 * 294.12148 * 4 3 2 28 28 H 1.09002 * 109.63099 * 173.54032 * 4 3 2 29 29 H 0.96999 * 120.00051 * 245.00553 * 9 6 5 30 30 H 1.09005 * 109.47567 * 284.99939 * 10 9 6 31 31 H 1.09003 * 109.47159 * 45.00266 * 10 9 6 32 32 H 1.09001 * 109.46923 * 300.00199 * 11 10 9 33 33 H 1.08997 * 109.47537 * 59.99705 * 11 10 9 34 34 H 0.96996 * 119.99975 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.62875 * 291.47435 * 20 5 4 36 36 H 1.08997 * 109.63057 * 170.89280 * 20 5 4 37 37 H 1.08997 * 109.49116 * 307.21603 * 21 2 1 38 38 H 1.08992 * 109.49351 * 67.27068 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 3.5164 1.3310 0.1826 5 7 4.0870 0.4458 -0.8441 6 16 5.3382 0.9526 -1.8033 7 8 5.9983 1.9879 -1.0880 8 8 5.9978 -0.2219 -2.2559 9 7 4.6726 1.6612 -3.1438 10 6 3.8873 2.8905 -3.0088 11 6 3.7081 3.5349 -4.3849 12 6 2.9009 4.7999 -4.2460 13 1 2.5503 5.1127 -3.2735 14 6 2.6090 5.5573 -5.3605 15 7 1.9041 6.6610 -5.2394 16 14 3.2147 5.0158 -7.0426 17 1 2.1966 4.1404 -7.6771 18 1 3.4411 6.2102 -7.8953 19 1 4.4878 4.2662 -6.8926 20 6 3.5164 -0.9011 -0.9967 21 6 1.9955 -0.7729 -1.1329 22 1 -0.3634 -1.0248 0.0770 23 1 -0.3633 0.5792 0.8489 24 1 -0.3633 0.4457 -0.9261 25 1 1.7556 1.8530 -0.9478 26 1 1.5457 1.9337 0.8183 27 1 3.7562 0.9448 1.1732 28 1 3.9256 2.3349 0.0690 29 1 4.8025 1.2622 -4.0184 30 1 2.9098 2.6531 -2.5888 31 1 4.4081 3.5836 -2.3481 32 1 4.6855 3.7723 -4.8049 33 1 3.1873 2.8419 -5.0456 34 1 1.6990 7.1940 -6.0234 35 1 3.7561 -1.5019 -0.1194 36 1 3.9255 -1.3730 -1.8900 37 1 1.5456 -1.7657 -1.1362 38 1 1.7552 -0.2616 -2.0650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001561463548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:25 Heat of formation + Delta-G solvation = -98.602179 kcal Electronic energy + Delta-G solvation = -20790.051644 eV Core-core repulsion = 17600.061199 eV Total energy + Delta-G solvation = -3189.990445 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.86062 -38.46884 -37.10250 -37.02127 -35.57653 -34.72750 -32.16523 -31.53218 -28.97977 -26.43010 -24.87660 -24.80193 -22.78351 -21.78449 -20.20889 -19.29792 -18.78790 -18.41681 -17.30677 -16.31028 -16.24364 -16.13329 -16.06410 -15.78450 -15.61562 -15.35245 -15.08077 -14.65317 -13.83313 -13.70818 -13.46742 -13.45753 -13.34237 -13.17703 -13.13372 -13.08712 -12.77039 -12.32179 -12.24846 -12.06541 -11.92384 -11.84062 -11.72702 -11.48137 -10.79796 -10.45752 -10.21096 -9.28983 -8.30718 -6.35875 -0.48585 1.35448 1.38720 1.49121 1.81628 2.34707 2.47417 2.96803 3.04955 3.24782 3.62078 4.02595 4.08936 4.13007 4.23664 4.31342 4.40022 4.47170 4.58125 4.65389 4.69263 4.73684 4.75514 4.82189 4.94748 5.03347 5.06216 5.11286 5.33269 5.41264 5.50306 5.59551 6.02981 6.06274 6.08093 6.24540 6.71641 7.28790 8.85300 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.005822 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.491854 B = 4807.943672 C = 5679.884545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.038 3.962 4 C 0.123 3.877 5 N -1.005 6.005 6 S 2.804 3.196 7 O -1.008 7.008 8 O -1.000 7.000 9 N -1.123 6.123 10 C 0.144 3.856 11 C -0.016 4.016 12 C -0.533 4.533 13 H 0.041 0.959 14 C 0.009 3.991 15 N -0.947 5.947 16 Si 0.947 3.053 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.247 1.247 20 C 0.124 3.876 21 C 0.039 3.961 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.018 0.982 25 H 0.028 0.972 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.421 0.579 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.713 -17.431 9.110 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.092 4.092 4 C -0.002 4.002 5 N -0.847 5.847 6 S 2.813 3.187 7 O -0.991 6.991 8 O -0.984 6.984 9 N -0.885 5.885 10 C 0.018 3.982 11 C -0.055 4.055 12 C -0.571 4.571 13 H 0.059 0.941 14 C -0.189 4.189 15 N -0.587 5.587 16 Si 0.770 3.230 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.170 1.170 20 C 0.000 4.000 21 C -0.091 4.091 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.036 0.964 25 H 0.047 0.953 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.255 0.745 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.301 -17.529 9.831 20.100 hybrid contribution -0.660 0.820 -2.000 2.260 sum -0.358 -16.709 7.831 18.457 Atomic orbital electron populations 1.22422 0.86030 1.03201 1.00647 1.61954 1.08680 1.13137 1.43103 1.22528 0.95008 0.90072 1.01553 1.21627 0.92876 0.93677 0.92030 1.58023 1.54304 1.23372 1.48979 1.01127 0.73118 0.72029 0.72465 1.93563 1.72896 1.59270 1.73384 1.93561 1.73483 1.49308 1.82037 1.55793 1.70557 1.37451 1.24654 1.21027 0.94012 0.83646 0.99492 1.19682 0.96781 0.94902 0.94177 1.21288 1.33566 1.07444 0.94840 0.94050 1.25932 0.94686 0.94609 1.03644 1.70047 1.40636 1.16379 1.31614 0.85714 0.80274 0.78219 0.78781 1.18954 1.21258 1.17047 1.21680 0.92805 0.81668 1.03895 1.22556 0.95052 0.99827 0.91629 0.89830 0.90545 0.96372 0.95340 0.88086 0.88835 0.89697 0.74461 0.91816 0.92149 0.95654 0.94929 0.92423 0.89016 0.88563 0.87408 0.95142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.58 127.69 1.22 1.62 16 2 N -0.54 -10.28 4.88 -921.47 -4.50 -14.78 16 3 C 0.04 0.80 5.62 86.38 0.49 1.29 16 4 C 0.12 2.74 6.53 86.34 0.56 3.31 16 5 N -1.00 -23.84 3.39 -512.20 -1.73 -25.58 16 6 S 2.80 82.98 6.15 -56.49 -0.35 82.64 16 7 O -1.01 -36.52 16.39 -128.00 -2.10 -38.62 16 8 O -1.00 -32.13 16.92 -128.00 -2.17 -34.29 16 9 N -1.12 -33.80 6.05 -187.49 -1.14 -34.94 16 10 C 0.14 5.26 6.18 86.38 0.53 5.79 16 11 C -0.02 -0.72 4.18 29.85 0.12 -0.60 16 12 C -0.53 -29.25 9.66 25.60 0.25 -29.00 16 13 H 0.04 2.47 7.99 -2.91 -0.02 2.45 16 14 C 0.01 0.50 5.47 84.65 0.46 0.96 16 15 N -0.95 -57.67 13.96 21.45 0.30 -57.37 16 16 Si 0.95 42.65 27.47 68.60 1.88 44.53 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.25 -10.32 6.54 99.48 0.65 -9.67 16 20 C 0.12 2.36 6.53 86.35 0.56 2.92 16 21 C 0.04 0.69 5.62 86.38 0.49 1.18 16 22 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 24 H 0.02 0.32 8.14 -2.38 -0.02 0.31 16 25 H 0.03 0.71 7.24 -2.39 -0.02 0.70 16 26 H 0.10 1.82 8.06 -2.38 -0.02 1.80 16 27 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 2.07 7.22 -2.39 -0.02 2.05 16 29 H 0.42 11.21 8.65 -96.75 -0.84 10.37 16 30 H 0.06 2.20 7.24 -2.38 -0.02 2.18 16 31 H 0.06 2.34 7.75 -2.39 -0.02 2.32 16 32 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 33 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 34 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.73 7.22 -2.39 -0.02 1.71 16 37 H 0.11 1.42 8.11 -2.39 -0.02 1.40 16 38 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -70.32 316.68 -4.95 -75.27 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.16 Total: 15.67 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 4.69 Total: -12.53 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -7.07 Total: -132.67 kcal Atomic # 8 Polarization: -68.64 SS G_CDS: -4.26 Total: -72.91 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Atomic # 16 Polarization: 82.98 SS G_CDS: -0.35 Total: 82.64 kcal Total: -70.32 -4.95 -75.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561463548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.333 kcal (2) G-P(sol) polarization free energy of solvation -70.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds