Wall clock time and date at job start Mon Mar 30 2020 02:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99881 * 2 1 4 4 H 1.48498 * 109.46903 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46911 * 300.00121 * 3 2 1 6 6 H 1.48494 * 109.46897 * 59.99999 * 3 2 1 7 7 C 1.38810 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00410 * 197.03100 * 7 2 1 9 9 N 1.36938 * 120.00111 * 17.02318 * 7 2 1 10 10 C 1.47073 * 120.88413 * 206.58049 * 9 7 2 11 11 C 1.53241 * 108.52407 * 231.16210 * 10 9 7 12 12 N 1.46894 * 109.33999 * 306.17486 * 11 10 9 13 13 C 1.46902 * 111.00043 * 187.24872 * 12 11 10 14 14 C 1.53002 * 109.47122 * 169.99741 * 13 12 11 15 15 N 1.46506 * 109.46847 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99615 * 179.72618 * 15 14 13 17 17 O 1.21277 * 120.00146 * 0.27633 * 16 15 14 18 18 C 1.50705 * 119.99784 * 180.27777 * 16 15 14 19 19 F 1.39900 * 109.46968 * 185.00173 * 18 16 15 20 20 F 1.39899 * 109.46865 * 305.00040 * 18 16 15 21 21 C 1.46902 * 111.27008 * 63.10446 * 12 11 10 22 22 C 1.47082 * 120.87825 * 26.56369 * 9 7 2 23 23 H 0.96995 * 120.00441 * 359.97438 * 1 2 3 24 24 H 1.09010 * 109.62666 * 111.45934 * 10 9 7 25 25 H 1.08992 * 109.79343 * 350.97375 * 10 9 7 26 26 H 1.09000 * 109.49487 * 186.21243 * 11 10 9 27 27 H 1.09004 * 109.48857 * 66.13149 * 11 10 9 28 28 H 1.09008 * 109.46710 * 49.99885 * 13 12 11 29 29 H 1.09002 * 109.47103 * 290.00292 * 13 12 11 30 30 H 1.08994 * 109.47052 * 60.00578 * 14 13 12 31 31 H 1.08995 * 109.47389 * 299.99878 * 14 13 12 32 32 H 0.96994 * 119.99741 * 0.02562 * 15 14 13 33 33 H 1.08998 * 109.47150 * 64.99687 * 18 16 15 34 34 H 1.08991 * 109.49565 * 56.85299 * 21 12 11 35 35 H 1.09004 * 109.49503 * 176.93836 * 21 12 11 36 36 H 1.08998 * 109.62881 * 248.54695 * 22 9 7 37 37 H 1.09008 * 109.63123 * 9.12281 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0548 -1.2227 0.2734 9 7 1.3707 -2.3619 -0.3482 10 6 1.8311 -3.6610 0.1650 11 6 2.0026 -4.6191 -1.0186 12 7 0.7551 -4.6639 -1.7929 13 6 0.8187 -5.6979 -2.8344 14 6 -0.5688 -5.8872 -3.4506 15 7 -0.5054 -6.9189 -4.4889 16 6 -1.6180 -7.2599 -5.1688 17 8 -2.6706 -6.7092 -4.9246 18 6 -1.5541 -8.3256 -6.2325 19 9 -2.7954 -8.4226 -6.8705 20 9 -0.5724 -7.9896 -7.1708 21 6 0.4404 -3.3514 -2.3728 22 6 0.2048 -2.3415 -1.2447 23 1 -0.4850 0.8400 0.0004 24 1 1.0921 -4.0637 0.8579 25 1 2.7849 -3.5382 0.6779 26 1 2.2366 -5.6170 -0.6478 27 1 2.8140 -4.2679 -1.6561 28 1 1.1518 -6.6376 -2.3935 29 1 1.5215 -5.3908 -3.6089 30 1 -0.9018 -4.9477 -3.8915 31 1 -1.2716 -6.1944 -2.6761 32 1 0.3364 -7.3596 -4.6838 33 1 -1.3057 -9.2826 -5.7735 34 1 1.2735 -3.0179 -2.9915 35 1 -0.4586 -3.4299 -2.9842 36 1 -0.6904 -2.6172 -0.6874 37 1 0.0842 -1.3434 -1.6660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566646081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:42 Heat of formation + Delta-G solvation = -100.223076 kcal Electronic energy + Delta-G solvation = -21603.093803 eV Core-core repulsion = 17859.192684 eV Total energy + Delta-G solvation = -3743.901119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.52290 -47.54922 -39.92395 -38.27975 -35.66556 -34.13122 -31.59820 -29.99486 -29.81836 -27.80642 -25.72365 -23.37236 -22.65392 -21.52546 -21.34014 -19.18299 -18.73569 -18.16202 -17.80328 -16.86793 -16.18413 -15.64148 -15.36033 -14.89382 -14.58527 -14.39449 -14.26695 -13.91024 -13.83781 -13.64654 -13.47618 -13.42311 -12.98757 -12.66120 -12.48868 -11.76987 -11.49171 -11.43491 -11.09893 -10.77994 -10.49148 -10.38764 -10.27138 -10.09468 -9.79813 -9.68139 -9.41110 -8.53686 -7.97008 -6.69913 -5.80037 -3.21595 1.83595 2.24809 3.36032 3.41615 3.43934 3.45910 3.71390 4.15392 4.27753 4.37411 4.48798 4.81559 5.02309 5.36256 5.37799 5.39579 5.71447 5.78094 5.83899 5.87321 5.99536 6.07908 6.16124 6.27156 6.48647 6.63369 6.86551 6.88529 7.19116 7.44776 7.55678 7.58064 7.65611 7.78822 8.41122 9.18945 9.82285 10.40381 11.28815 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.034976 B = 0.003175 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.360934 B = 8816.820889 C = 9129.414153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.044 3.956 14 C 0.118 3.882 15 N -0.710 5.710 16 C 0.469 3.531 17 O -0.498 6.498 18 C 0.259 3.741 19 F -0.176 7.176 20 F -0.189 7.189 21 C 0.030 3.970 22 C 0.178 3.822 23 H 0.254 0.746 24 H 0.026 0.974 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.405 0.595 33 H 0.138 0.862 34 H 0.027 0.973 35 H 0.064 0.936 36 H 0.028 0.972 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -17.994 -10.307 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.254 5.254 13 C -0.085 4.085 14 C -0.005 4.005 15 N -0.363 5.363 16 C 0.250 3.750 17 O -0.371 6.371 18 C 0.201 3.799 19 F -0.157 7.157 20 F -0.170 7.170 21 C -0.099 4.099 22 C 0.052 3.948 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.239 0.761 33 H 0.155 0.845 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.160 -17.515 -9.804 20.073 hybrid contribution 1.457 0.841 -0.825 1.874 sum 1.617 -16.674 -10.629 19.840 Atomic orbital electron populations 1.70030 1.05212 1.25442 1.53966 1.25033 0.95311 0.98392 1.00974 0.86229 0.79287 0.83978 0.77312 1.20320 1.21561 1.21682 1.19227 0.92605 0.84772 1.41690 0.91580 1.44136 1.34160 1.01267 1.52360 1.20968 0.97894 0.86483 0.92488 1.22637 0.89188 0.99579 0.96917 1.61883 1.34794 1.05791 1.22961 1.22198 0.94615 0.97232 0.94450 1.21552 0.98808 0.90697 0.89447 1.45871 1.10936 1.41039 1.38473 1.21008 0.85296 0.84813 0.83907 1.90857 1.29023 1.51628 1.65629 1.21665 0.73788 1.00242 0.84182 1.93067 1.42616 1.97039 1.82995 1.93061 1.61916 1.94205 1.67852 1.23025 0.98855 0.89173 0.98849 1.20871 0.89013 0.96600 0.88361 0.93607 0.95604 0.92509 0.91908 0.95259 0.90656 0.94728 0.90463 0.89751 0.76074 0.84544 0.95474 0.91787 0.95411 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 11.15 55.49 0.62 -25.56 16 2 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 3 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.92 9.63 -15.06 -0.15 -7.07 16 8 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 9 N -0.60 -14.92 3.04 -172.01 -0.52 -15.44 16 10 C 0.15 3.06 6.69 -3.60 -0.02 3.04 16 11 C 0.05 0.77 5.62 -3.70 -0.02 0.75 16 12 N -0.53 -8.73 4.63 -234.32 -1.08 -9.81 16 13 C 0.04 0.53 5.08 -3.82 -0.02 0.51 16 14 C 0.12 1.40 5.61 -4.04 -0.02 1.38 16 15 N -0.71 -6.40 5.56 -60.29 -0.33 -6.74 16 16 C 0.47 5.05 7.63 -10.98 -0.08 4.97 16 17 O -0.50 -7.78 16.62 5.56 0.09 -7.69 16 18 C 0.26 1.95 5.72 36.01 0.21 2.16 16 19 F -0.18 -1.86 16.95 2.25 0.04 -1.83 16 20 F -0.19 -1.57 17.32 2.25 0.04 -1.53 16 21 C 0.03 0.56 5.46 -3.70 -0.02 0.54 16 22 C 0.18 4.25 5.42 -3.60 -0.02 4.23 16 23 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 26 H 0.06 0.87 7.99 -51.93 -0.41 0.46 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.75 7.97 -51.92 -0.41 0.34 16 29 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.08 1.07 6.40 -51.93 -0.33 0.74 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.40 2.30 8.47 -40.82 -0.35 1.96 16 33 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 1.11 6.16 -51.93 -0.32 0.79 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.09 2.38 6.12 -51.92 -0.32 2.06 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -32.91 312.20 -6.78 -39.69 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.07 Total: -2.81 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -0.24 Total: 10.45 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -1.32 Total: -57.55 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.69 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.08 Total: -3.35 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.91 -6.78 -39.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566646081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.532 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds